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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024317 ID=TCONS_00024317|Name=TCONS_00024317|organism=Clytia hemisphaerica|type=transcript|length=1512bpRun BLAST on NCBI transcript from alignment at sc0000487:16710..33807- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024317 ID=TCONS_00024317|Name=TCONS_00024317|organism=Clytia hemisphaerica|type=transcript|length=17098bp|location=Sequence derived from alignment at sc0000487:16710..33807- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00024317 vs. Swiss-Prot (Human)
Match: NALD2 (N-acetylated-alpha-linked acidic dipeptidase 2 OS=Homo sapiens GN=NAALAD2 PE=1 SV=1) HSP 1 Score: 263.077 bits (671), Expect = 2.044e-86 Identity = 150/387 (38.76%), Postives = 223/387 (57.62%), Query Frame = 3
Query: 351 KYLGGAEVTDDEWVGYLNTTYRYGPL---ENSSLTVDLVVNNDNKITDIRNVCGFLKGKYEPDRYVMLGNHVDAWVNGAVDATSGTTVMMEIARALGEKHKTGWRPRRSIMLCGWDGEESGLIGSVEHVEEYYSQLKDKAIAYINIDSAVAGNNSLLTAASPLLHDLMFDVHKKVNDP---YRDETVFDRCMIHYKDTDYNKTHKIYSLGAGSDYFAFYKFTGIPSIDMSYRQSDLDQIYNTSYYPQYHTFHDTIFWMEHFVDKDYKVHLTVARVGLLYLLKLADNPLIPFTMQRYVNALNRGVTSLKSTMKK-DGGLGEAKISELVKPLDDGVKSFSKAVASMTKYIASVKKDKEKLNNPMFVRMLNDKLMQLEKGFAYPGGVPGR 1490
+YLGG D W G LN +Y GP +S V + V N NKIT I NV G ++G EPDRYV+LG H D+WV GA+D TSG V+ EIAR+ G+ GWRPRR+I+ WD EE GL+GS E EE L++++IAYIN DS++ GN +L +PLL+ L++ + K++ P + +++++ + + +I LG+GSD+ A+++ GI S Y ++ Y++ YP YHT ++T +E F D +K L+VA++ + +L D+ +IPF +Q Y AL S+ + KK D L + +S L VK+FS+A + K + V LNNP+ VRM+ND+LM LE+ F P G+PG+
Sbjct: 297 RYLGGIAPPDKSWKGALNVSYSIGPGFTGSDSFRKVRMHVYNINKITRIYNVVGTIRGSVEPDRYVILGGHRDSWVFGAIDPTSGVAVLQEIARSFGKLMSKGWRPRRTIIFASWDAEEFGLLGSTEWAEENVKILQERSIAYINSDSSIEGNYTLRVDCTPLLYQLVYKLTKEIPSPDDGFESKSLYESWLEKDPSPENKNLPRINKLGSGSDFEAYFQRLGIASGRARYTKNKKTDKYSS--YPVYHTIYETFELVEKFYDPTFKKQLSVAQLRGALVYELVDSKIIPFNIQDYAEALKNYAASIYNLSKKHDQQLTDHGVS--FDSLFSAVKNFSEAASDFHKRLIQV-----DLNNPIAVRMMNDQLMLLERAFIDPLGLPGK 674 HSP 2 Score: 75.8702 bits (185), Expect = 2.044e-86 Identity = 47/116 (40.52%), Postives = 66/116 (56.90%), Query Frame = 1
Query: 7 AYSMKGAARGKNLVYANFGRDQDYQKLI-ELKINVTDCIVLTKYGMGGRGGKVRMAEKYKAAGILIYGDPRQYAPVLSEKFPDGRWLSDDGVQRGSIIGGEGVPEGDPMSGGYPAK 351
A+S +G G +LVY N+ R +D+ KL E+ IN T IV+ +YG RG KV+ A A GI++Y DP Y + +P G L QRG+++ G GDP++ GYPAK
Sbjct: 153 AFSAQGMPEG-DLVYVNYARTEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGA--GDPLTPGYPAK 265 The following BLAST results are available for this feature:
BLAST of TCONS_00024317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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