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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024288 ID=TCONS_00024288|Name=TCONS_00024288|organism=Clytia hemisphaerica|type=transcript|length=7346bpRun BLAST on NCBI transcript from alignment at sc0000486:202425..235572+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024288 ID=TCONS_00024288|Name=TCONS_00024288|organism=Clytia hemisphaerica|type=transcript|length=33148bp|location=Sequence derived from alignment at sc0000486:202425..235572+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00024288 vs. Swiss-Prot (Human)
Match: DYH10 (Dynein heavy chain 10, axonemal OS=Homo sapiens GN=DNAH10 PE=1 SV=4) HSP 1 Score: 3132.43 bits (8120), Expect = 0.000e+0 Identity = 1541/2300 (67.00%), Postives = 1864/2300 (81.04%), Query Frame = 3
Query: 3 NGERIRLQAHCALLFEVNDLRYASPATVSRSGMVYVDPKNLGYHPYWARWVGARANKQEQKSLQTLYDKYVSALIDMVLDGIVDGREEKKLKTIVPLTNLNMVTQLSMMLNALLPPSDGNSFMGEEVTESIFITSLVWSVGASLLEEGRVKFDGYLKRLSGLGTNPSEKT-VPAGELPSAQATLYDYYFDIEQRAWVPWTAKVPEYIHNPEMRFNEILVPTVDTVRSTWLVELMVKINRPVVLVGETGTSKSATIHSFLRGLDRDVYLPLNVNFSSRTTSMDVQRNLEGNVEKRTKDTFGPPMGKKMLVFIDDMNMPQVDTYGTQQPIALLKLLLEKGGMYDRGKELNFKNFRDIGFLAAMGKAGGGRNEVDPRFVSLFSVFNITFPSEESLRKIYFSILDGHLQPFDKEVRQLAETATQCTLNLYTRIVRDLPPTPSKFHYIFNLRDLSRITHGLCLTTPDRFENQEKFVRVWRNECLRVFYDRLINKKDKDLVHAHMMELVSEHFPDHRDYVERDPVLFGDYRNALTE-EPRLYEDMVDYDAAKAIFEEILEEYNVDHNTLNLVLFDDALEHLTRIHRVIRMDQGHALLVGVGGSGKQSLTRLAAFSAGCEVFEVTLTRGYSESDFREDLKVLYTKLGLENKKMVFLFTDSHVAEEGFLELINNMLTSGMVPALFPDDEKEGILTAVRDEAQKAGISPSREAIWQYFVTKCANNLHIVLAMSPVGDILKTRCRNFPGLVNNTCIDWFMPWPKQALLAVASRFLEDNKLVPEEHKDTVIAHVVKVHESVGDYSRLFLQKLRRLNYVTPKNYLDFVNTYTKLLEEKDKYVLDQCHRLDGGLSKLLAASEQLVELNEKLAVQKVAVTEKTESCEKLLAEISERTGIATEKKQLALGKKTEIAEQNVQIVXXXXXXXXXXXXXXXXXXXXXNALQDLNKSDVTEIRSFAKPPKAVQTVSECIVVLRGIKEISWKAAKGMMSEANFLKNLMEMDVDGINAAQVKTVKGFLKEMNVTVSEMKDISTAGAGLLKFVNAVMGYCSVAREIKPKREKVARLERNFHMSKRXXXXXXXXXXXXXXXXXXXSNKYEAAMRDKQALQEEAELMERRLIAADKLISGLGSEKVRWTDDLEDLKQQRNRLLGDCLLGAAFLSYLGAFSWDFRNDLLRQEWEKDIVNKNIPKSEPFKIDELLTSDVEISRWTSEGLPPDELSIENGVLTTQASRYPLCIDPQQQALNWIRKREEPNNLKVLTFNDPDFLKQLELSIKYGFPVLFKDVDEYIDPVIDNVLEKNIKGEPGRQTVLLGDKETDYDPAFRLYLNTKLSNPKFTPAHFGKCMVVNYTVTLKGLEDQLLSVIVGFXXXXXXXXXXXXXXXTSENKRLLKDLEDTLLRELATSTGNMLDNVELVQTLEDTKTKATDVAEKLKLGAKTAIDIDKLRDGYRPAAKLGAVLFFVLAEMSSINSMYQYSLNSYLEVFDLSLRKSLPDSILVKRLKNIMDTLTINVYNYACTGLFERHKLLFSFQMTIKIMQSENKLNQDELDFFIKGNIALEKSSRRKPFPWLLDQGWEDVVKLSSVAPDVFASLCDDIERYESVWKEWNDDDAPESQEFPLKYEETLSDFQRLMLLRCFRVDRIYRAITNFVTVRMGERYVTPPVISFEAIFEQSTPFSPVIFILSPGSEPASDLMKLAERSGFGVNKLKYLAMGQGQEKLALQLLETAISRGHWLMLQNCHLLVKWLRELEKILEKITKPHPDFRLWLTTDPTPDFPIGILQRSLKVVTEAPNGLKLNLRSTFHKISTPALAECPHPAFPPLVYVLAFFHAVVQERRKYGKIGWNINYDFNESDFRVSMQLLDTYLTKAHFLGDGKIPWESLKYLVGEVMYGGRVIDAFDRRVVATYMGEYMGDFIFDTFQPFHFYFDDKVDYFXXXXXXXXXXXDGGETAEXXXXXXXXXXXXXXXXXXLAGLRAECDRDLYMEVIEALPLANTPDVFGLHPNAEIGYYTSAAKDMWTQLVELQPQTGGDSGGKSREEFIGKIAADIQEKLPTLYDVNGFRKKLGLEISPTTVVLLQELDRFNVLIRKMGTTLMNLQRALAGEVGMDNELDDVARALFNGQIPPSWRKLAPATLKNLGGWMEHFMRRNEQYTAWVENGEPTVMWLSGLHIPESYLTALIQAACRKNGWPLDRFTLYTTVTEFVSEKEITERPSTGCYVQGLYLEGASWDLETSQLSLPIPKQLVCELPILRVTPIEAQKLKLQNTLRTPVYVTSERRNAMGVGLVFEADLATFEHQSHWILQGVCLTLNSD 6896
NGERIRLQAHCALLFEV DL+YASPATVSR GMVYVDPKNL Y PYW +WV NK EQ +L +L++KYV L+D++++GIVDGR+ +KLKTIVP T+LNMVTQL+ ML+ALL ++ E F+ +L S+GASLLE+GR+KFD Y+KRL+ L T +E GELP TLYD++FD ++ WVPW+ VPEYIH PE +F ILV TVDT R+TW++E MVKI +PV+ VGE+GTSK+AT +FL+ L + + L VNFSSRTTSMD+QRNLE NVEKRTKDT+GPPMGK++LVF+DDMNMP+VD YGTQQPIALLKLLLEKG +YDRGKELN K+ RD+GF+AAMGKAGGGRNEVDPRF+SLFSVFN+ FPSEESL IY SIL GH F + + ++ T CTL LY IV+DLPPTPSKFHYIFNLRDLSR+ +GL LT P+RF+ + VRVWRNECLRVF+DRLI++ DK LV H+ LV EHF D + V RDP+LFGD++ AL E EPR+YED+ DY+AAKA+F+EILEEYN + +NLVLFDDALEHLTR+HR+IRMD+GHALLVGVGGSGKQSL+RLAAF+A CEVFE+ L+RGYSE+ FREDLK LY KLG+ENK M+FLFTD+HVAEEGFLELINNMLTSG+VPALF ++EKE IL+ + EA K G+ P++E++WQYFV K ANNLHIVL MSPVGD L+T CRNFPG+VNNT IDWFMPWP QAL AVA FL N ++P E+ + V+ HVV VH+SV YS+ FLQKLRR NYVTPKNYLDF+NTY+KLL+EK + + QC RLDGGL KL A+ QL ELN+KLA QK+ + EK+ +CE LL EI+ T +A EKK+LA K EI EQN I EKAEAE LAE +P LE AK LQ L+KSDVTEIRSFAKPPK VQTV ECI++++G KE++WK AKG+MS+ NFL++LME+D D I +QVK +KG LK +N T EM+ +S AG G+LKFV AVMGYC V REIKPKREKVARLERNF+++KRELE+I+ E+A I+ EL+ L KYEAA+ +KQ LQEEAE+MERRLIAADKLISGLGSE +RW +DL++L +R +LLGDCLL AAFLSY GAF+W+FR++++ + W+ DI+ + IP S+PF+++ LLT DVEISRW S+GLPPDELS++NG+LTT+ASR+PLCIDPQQQALNWI+++EE NNL+V +FNDPDFLKQLE+SIKYG P LF+DVDEYIDPVIDNVLEKNIK GRQ ++LGDKE DYD FRLYLNTKL+NP+++P+ FGK MV+NYTVTLKGLEDQLLSV+V +ER+ELEEQRE LIQETSENK LLKDLED+LLRELATSTGNMLDNV+LV TLE+TK+KAT+V+EKLKL KTA+DID+LRDGYRPAA+ GA+LFFVL+EM+ +NSMYQYSL ++LEVF LSL+KSLPDSIL+KRL+NIMDTLT ++YN+ CTGLFERHKLLFSF MTIKI Q+E ++ Q+ELDFF+KGNI+LEKS R+KP WL DQGWED++ LS + D F L DD+E ++VW+EW D D+ E PL Y+ ++ FQ+L++LRCFRVDR+YRA+T++VTV MGE+YV PP+ISFEAIFEQSTP SP++FILSPGS+PA+DLMKLAERSGFG N+LK+LAMGQGQEK+ALQLLETA++RG WLMLQNCHLLVKWL++LEK LE+ITKPHPDFRLWLTTDPT FPIGILQ+SLKVVTE PNGLKLN+R+T+ KIS L +CPHPAF PLVYVLAFFHAVVQERRK+GKIGWN+ YDFNESDF+V M++L+TYLTKA D +IPW SLKYL+GEVMYGGR ID+FDRR++ YM EY+GDFIFDTFQPFHF+ + +VDY + +++ ++E IEALPLANTP+VFGLHPNAEIGYYT AA+DMW L+ELQPQTG S G SR+++IG++A +I+ K+P ++D++ RK+LG +SPT+VVLLQEL+RFN L+ +M +L LQRALAGEVGM NELDDVAR+LF G IP WR+LAP TLK+LG WM +F+RR QY WV EP+VMWLSGLHIPESYLTAL+QA CRKNGWPLDR TL+T VT+F E+ ER GC+V GLYLEGA WD+E L PK LV +LPIL++ PIEA +LKLQNT RTPVY TS RRNAMGVGLVFEADL T H SHW+LQGVCLTLNSD
Sbjct: 2215 NGERIRLQAHCALLFEVGDLQYASPATVSRCGMVYVDPKNLKYRPYWKKWVNQIPNKVEQYNLNSLFEKYVPYLMDVIVEGIVDGRQAEKLKTIVPQTDLNMVTQLAKMLDALLE----GEIEDLDLLECYFLEALYCSLGASLLEDGRMKFDEYIKRLASLSTVDTEGVWANPGELPGQLPTLYDFHFDNKRNQWVPWSKLVPEYIHAPERKFINILVHTVDTTRTTWILEQMVKIKQPVIFVGESGTSKTATTQNFLKNLSEETNIVLMVNFSSRTTSMDIQRNLEANVEKRTKDTYGPPMGKRLLVFMDDMNMPRVDEYGTQQPIALLKLLLEKGYLYDRGKELNCKSIRDLGFIAAMGKAGGGRNEVDPRFISLFSVFNVPFPSEESLHLIYSSILKGHTSTFHESIVAVSGKLTFCTLALYKNIVQDLPPTPSKFHYIFNLRDLSRVFNGLVLTNPERFQTVAQMVRVWRNECLRVFHDRLISETDKQLVQQHIGSLVVEHFKDDVEVVMRDPILFGDFQMALHEGEPRIYEDIQDYEAAKALFQEILEEYNESNTKMNLVLFDDALEHLTRVHRIIRMDRGHALLVGVGGSGKQSLSRLAAFTASCEVFEILLSRGYSENSFREDLKSLYLKLGIENKAMIFLFTDAHVAEEGFLELINNMLTSGIVPALFSEEEKESILSQIGQEALKQGMGPAKESVWQYFVNKSANNLHIVLGMSPVGDTLRTWCRNFPGMVNNTGIDWFMPWPPQALHAVAKSFLGYNPMIPAENIENVVKHVVLVHQSVDHYSQQFLQKLRRSNYVTPKNYLDFINTYSKLLDEKTQCNIAQCKRLDGGLDKLKEATIQLDELNQKLAEQKIVLAEKSAACEALLEEIAVNTAVAEEKKKLAEEKAMEIEEQNKVIAMEKAEAETTLAEVMPILEAAKLELQKLDKSDVTEIRSFAKPPKQVQTVCECILIMKGYKELNWKTAKGVMSDPNFLRSLMEIDFDSITQSQVKNIKGLLKTLNTTTEEMEAVSKAGLGMLKFVEAVMGYCDVFREIKPKREKVARLERNFYLTKRELERIQNELAAIQKELETLGAKYEAAILEKQKLQEEAEIMERRLIAADKLISGLGSENIRWLNDLDELMHRRVKLLGDCLLCAAFLSYEGAFTWEFRDEMVNRIWQNDILEREIPLSQPFRLESLLTDDVEISRWGSQGLPPDELSVQNGILTTRASRFPLCIDPQQQALNWIKRKEEKNNLRVASFNDPDFLKQLEMSIKYGTPFLFRDVDEYIDPVIDNVLEKNIKVSQGRQFIILGDKEVDYDSNFRLYLNTKLANPRYSPSVFGKAMVINYTVTLKGLEDQLLSVLVAYERRELEEQREHLIQETSENKNLLKDLEDSLLRELATSTGNMLDNVDLVHTLEETKSKATEVSEKLKLAEKTALDIDRLRDGYRPAARRGAILFFVLSEMALVNSMYQYSLIAFLEVFRLSLKKSLPDSILMKRLRNIMDTLTFSIYNHGCTGLFERHKLLFSFNMTIKIEQAEGRVPQEELDFFLKGNISLEKSKRKKPCAWLSDQGWEDIILLSEMFSDNFGQLPDDVENNQTVWQEWYDLDSLEQFPVPLGYDNNITPFQKLLILRCFRVDRVYRAVTDYVTVTMGEKYVQPPMISFEAIFEQSTPHSPIVFILSPGSDPATDLMKLAERSGFGGNRLKFLAMGQGQEKVALQLLETAVARGQWLMLQNCHLLVKWLKDLEKSLERITKPHPDFRLWLTTDPTKGFPIGILQKSLKVVTEPPNGLKLNMRATYFKISHEMLDQCPHPAFKPLVYVLAFFHAVVQERRKFGKIGWNVYYDFNESDFQVCMEILNTYLTKAFQQRDPRIPWGSLKYLIGEVMYGGRAIDSFDRRILTIYMDEYLGDFIFDTFQPFHFFRNKEVDY---------------------------------------KIPVGDEKEKFVEAIEALPLANTPEVFGLHPNAEIGYYTQAARDMWAHLLELQPQTGESSSGISRDDYIGQVAKEIENKMPKVFDLDQVRKRLGTGLSPTSVVLLQELERFNKLVVRMTKSLAELQRALAGEVGMSNELDDVARSLFIGHIPNIWRRLAPDTLKSLGNWMVYFLRRFSQYMLWVTESEPSVMWLSGLHIPESYLTALVQATCRKNGWPLDRSTLFTQVTKFQDADEVNERAGQGCFVSGLYLEGADWDIEKGCLIKSKPKVLVVDLPILKIIPIEAHRLKLQNTFRTPVYTTSMRRNAMGVGLVFEADLFTTRHISHWVLQGVCLTLNSD 4471 The following BLAST results are available for this feature:
BLAST of TCONS_00024288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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