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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024183 ID=TCONS_00024183|Name=TCONS_00024183|organism=Clytia hemisphaerica|type=transcript|length=3204bp
GATAAATTAACAAATATGAAACATATACAATGGCTGGCGCCAGTACAAGT
ATCCATTTAcatcaaaaacaactttttcgTGTCATTTCGACAGGACAATA
CACTCTACACCAACTAGTAAATTATTTCGCTTTAACTGTTGAACCAAATC
CGGCTAATGATGGAGGCATAGCTTTGAGCAAAATTTTTACTAAGAGAAAA
GACAAGgtgaaaaatttctcaaacatTTCCAATGGGGCTATCAAAGTGAT
ATATATCGGTGACCGCGCAAACGGTATTTTCCAgccaaaaatcaacattt
tagTGTTGGACACCAATCTCCTAGTTCAGATTCTCAGAGGTATCGAAGAT
TTTCCAACATCCAACACTTATTTTCGTGCTGGTATTTCTTGTAAAAACAC
TTCCAGCCATTTGAACAAATGTTGTCAAGGATGTAACCATGAGTGTATTT
ATTGTGGTAAAGACGAATGCAAGAAACAATGCCGCTGTAGTCAAGAGAAA
AGAAATTGTGGAAATCACCCatgcaaaatttgtaaatcAACGAGATTCGA
CTGCAAGAGCAACAAATTCATCTGCTGTCAAAAATGTAAAACTTGCCTAC
ACTGTCTTTTGGCACGTTATAGATTGACTCATTGGCACCAACTTTTCAAA
CATTTAGTCGATGGGAGAATTACTGGTATTTGCGAATTTCGAGAATTGAG
GTTTTCCATGTCTATTGTGGCTACCTTTCGGAACATAACCATGCACCTTA
CGTCGGCTGAATGCGATCAAATGGACACTGGAACCTTTCAAGATCCAAAT
GTGCCATGGAAATCGTGGCTAGACATTCGAGATATTATTTGGTATGCAGT
GAAATTCATGATAAACTTTTTAGCAAAACCTCTTCCAAACCCAACGGCAA
GTGCTCCACCGTACCCATCGTTGAGCATTCCTCCGAACCCAGTTATTACA
AATTATGAAAAGGAAGATCTTTTGCAACTTTTACGCTCTGTCTACATGGC
AAGCAAACATGACGATCTCCCCATGTACAACAACTTGCAACTAGAGCAAT
TTTCTTCCAACGAAAAACATCTAGTCAGTTTGCGCAAGGCAGTAGATGAT
TGCAGGGTTGCAGTATCTGACAAacccttaaaaattgaaatccatTTTCG
GTTTTCGAAAAAGATGaaagattttgatttgaaatgcaaaGAAGCTGCAA
ATATTAACcaaatctttaaagaaacatTACAAATTCATTTTGCTAAAGAA
TTCCCACACCAACCCAATGCATTTAGATCTGCACTTGTTCACGTCGACAA
TGTAACAAAACCAAGTAAAGAATCAAAAACAATCCCGTTAAAATTTGAGA
TTACATCATCAGAAATACCGTTGGATCAATACCGATATCAAGATGATCCA
TTGTCTGAGGCTCTTTGGAAAGATATTGAGAAAGAGCTCTTGGACACCAA
GCTACCGATCAAAAAAGTATCGCTCAAAGGCTGGGAAAAAGGCTCTATTA
TCATTCATCTTTGCTTAGTCAGAGAGGGTGACTGTTACTGGTCCGAGGAA
GAAATATCGAATGTTGATAAACTGTTGGTATCGTTTTCGCAAATGGTTGA
AAAGATAATGCCGCGTACACGATGTAAATGTCAGCGACTGCAAGAGCATC
ATTGGATGACTGACGAAGCATCTATCGGTGTGGCTACATTTTGGGTCAAT
ACCGACGAAGAGCATAAAGAGTTATTAAAAAAGGATGAAGATAAAGTTGT
CGAAAAACTATCACTCATTTTAGATGGACAGGAAAATAATGATATTGTAC
CCATCAAACCGAAATCAATTGTGGAGGATATTTCACTTGTTTCGGTAGAT
CAGGAACCAATCTGTCAACATCCCATTGATAAAAACGTTCGAGAAAATAA
CACGGGTGAAAAGACAGAGCCAGCAAAAGTGCAAGGATGCGTGGAAAAAG
CGAACGCACGAAACCAAAACGGAGACGCTTTACACGAGGCCGCAAGAAAA
GGATTAGACCAAGAGATTAAGGCGCTTTTAAAGAAGGGGTTAAACGTTGA
TTCTTTGGATATGGAAGGAAACACACCACTTTTTTACGCTTCCAATAATG
GCCAAGCAGGGACAGCTGTCATTCTACTCAAATATGAAGCCAACGTGAAT
CACAAATCAAATCACGGTTTCACAGCGCTCATGCACGCCGCATGGAAAGG
TCACGTTGATTTAGTATCGCTACTGATCGCACATGGTGCTGATGTAAAAA
TCGTTACCGCAAAGAACTATACGGCGTTATGTTTCGCAACCTTAGGTGGT
TTCGCAAAGGTGTCAATAATCTTACGCCAAGCGGACAACATTCTCAAAGA
TACTAAAGCCCCTTTATCTATTGGATTCGGACAAAATCTGAGAATAAAGA
ACTTAGAACACAATGTGAAACAGAGAAGTCTATATGGTACCACAAGTTTA
GCATTAGACATGTTTTtcgtaaaaactttacaaaacagaaaaaaccgTCA
GGAcagaaaatcgcgaaagttatGTCTAAGCTCAAATTTGTTTAAATTTA
AAACCGGATTGCAGGGTTCTCCCCATCTGCCAGGGGCATAAATTAATTTA
TAGTAACGATTTGCATATatttgtaagcaaaaaaatcGAATAGGAAAATg
ctaatttttataaaaattattaaatttttgaTACTAGGCTGTACTTAGTT
TTTGGTATCTAGAGCCTCTAATTGTTCTCATATAGGTATTTTAAGTATTG
TATaccttttttactatttttcagCCCGCTCAATGTTCTCAAgtggttca
aatttttttttgcctcgTTGATCATAAAGTTTTTCTAACAAAATATAGTG
CCGAGTAGGATTAAACAAAGAAGGGCAAACAAAAATCTTACTTTATGGTT
TCTTAGGGGGAAtatttctttaacttttttggggatCTTACTCTTCATGA
GCTATGGCTTTTAGATTTCTGAAATCGGTACCGTAATTTTGTAATCGATC
AACGTATCCACTTTCATTCTAAATCACATGTTAAAAGGGAGCTCCTGATA
ATGTGATGGGTCGGTTTACAAAGTTGGTTGTTTGTGTTTAAGAACCTGTT
GTTTTCTACCAATAAGCCATTTTTCACTCCGCTGTAAAAATTAGAGTAGG
TagcaatttttataaaaaaatattttattcagTAATATATAAAACAAAAG
CGCC Run BLAST on NCBI transcript from alignment at sc0000478:187263..191481+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024183 ID=TCONS_00024183|Name=TCONS_00024183|organism=Clytia hemisphaerica|type=transcript|length=4219bp|location=Sequence derived from alignment at sc0000478:187263..191481+ (Clytia hemisphaerica)
GATAAATTAACAAATATGAAACATATACAATGGCTGGCGCCAGTACAAGT
ATCCATTTAcatcaaaaacaactttttcgTGTCATTTCGACAGGACAATA
CACTCTACACCAACTAGTAAATTATTTCGCTTTAACTGTTGAACCAAATC
CGGCTAATGATGGAGGCATAGCTTTGAGCAAAATTTTTACTAAGAGAAAA
GACAAGgtgaaaaatttctcaaacatTTCCAATGGGGCTATCAAAGTGAT
ATATATCGGTGACCGCGCAAACGGTATTTTCCAgccaaaaatcaacattt
tagTGTTGGACACCAATCTCCTAGTTCAGATTCTCAGAGGTATCGAAGAT
TTTCCAACATCCAACACTTATTTTCGTGCTGGTATTTCTTGTAAAAACAC
TTCCAGCCATTTGAACAAATGTTGTCAAGGATGTAACCATGAGTGTATTT
ATTGTGGTAAAGACGAATGCAAGAAACAATGCCGCTGTAGTCAAGAGAAA
AGAAATTGTGGAAATCACCCatgcaaaatttgtaaatcAACGAGATTCGA
CTGCAAGAGCAACAAATTCATCTGCTGTCAAAAATGTAAAACTTGCCTAC
ACTGTCTTTTGGCACGTTATAGATTGACTCATTGGCACCAACTTTTCAAA
CATTTAGTCGATGGGAGAATTACTGGTATTTGCGAATTTCGAGAATTGAG
GTTTTCCATGTCTATTGTGGCTACCTTTCGGAACATAACCATGCACCTTA
CGTCGGCTGAATGCGATCAAATGGACACTGGAACCTTTCAAGATCCAAAT
GTGCCATGGAAATCGTGGCTAGACATTCGAGATATTATTTGGTATGCAGT
GAAATTCATGATAAACTTTTTAGCAAAACCTCTTCCAAACCCAACGGCAA
GTGCTCCACCGTACCCATCGTTGAGCATTCCTCCGAACCCAGTTATTACA
AATTATGAAAAGGAAGATCTTTTGCAACTTTTACGCTCTGTCTACATGGC
AAGCAAACATGACGATCTCCCCATGTACAACAACTTGCAACTAGAGCAAT
TTTCTTCCAACGAAAAACATCTAGTCAGTTTGCGCAAGGCAGTAGATGAT
TGCAGGGTTGCAGTATCTGACAAacccttaaaaattgaaatccatTTTCG
GTTTTCGAAAAAGATGaaagattttgatttgaaatgcaaaGAAGCTGCAA
ATATTAACcaaatctttaaagaaacatTACAAATTCATTTTGCTAAAGAA
TTCCCACACCAACCCAATGCATTTAGATCTGCACTTGTTCACGTCGACAA
TGTAACAAAACCAAGTAAAGAATCAAAAACAATCCCGTTAAAATTTGAGA
TTACATCATCAGAAATACCGTTGGATCAATACCGATATCAAGATGATCCA
TTGTCTGAGGCTCTTTGGAAAGATATTGAGAAAGAGCTCTTGGACACCAA
GCTACCGATCAAAAAAGTATCGCTCAAAGGCTGGGAAAAAGGCTCTATTA
TCATTCATCTTTGCTTAGTCAGAGAGGGTGACTGTTACTGGTCCGAGGAA
GAAATATCGAATGTTGATAAACTGTTGGTATCGTTTTCGCAAATGGTTGA
AAAGATAATGCCGCGTACACGATGTAAATGTCAGCGACTGCAAGAGCATC
ATTGGATGACTGACGAAGCATCTATCGGTGTGGCTACATTTTGGGTCAAT
ACCGACGAAGAGCATAAAGAGTTATTAAAAAAGGATGAAGATAAAGTTGT
CGAAAAACTATCACTCATTTTAGATGGACAGGAAAATAATGGTGTGTGTA
AGTATTGTAATATATTCTCCTAATTTAGATTCATAATTTTAATGTCCCCA
TTGATTGCAGACTTTTAtgtaaagtaagtaagtctgcgacggTAGTAGGA
gacgacccgaaggctcctcttttgatAGATATCTACCCGAAGATAGAAGA
GGACACCACTCTTTCTCCccggattgctccacttacttTTGATCCTCTCA
TTAATTGCCGAGAATCgggcagagaggcatcaagtaccattcaggagaag
tctttggtatgatctggccagggattgaacccacgacctaaagtaaaatc
ctcataatttatgCCAAGTTTTACGACTTGTTTACTTAATACCTCAATCT
CAAAAACATATTCGACGATCatgggaattgaatatctatttaATGAACAG
AGAGTtgtaatcttttttcaattattctaaGCCCAGTTTAAATAACGAGT
TTTGAGGATTTCACTTTATACAAAATTCTGTCCACTTTTTTAGGGACATA
CTGTATAAACTGCTAAATCCTAAAacatttcttcaatttctttaaGATAT
TGTACCCATCAAACCGAAATCAATTGTGGAGGATATTTCACTTGTTTCGG
TAGATCAGGAACCAATCTGTCAACATCCCATTGGTAAGTACATATAGTTA
TGGGCAAACCATTAAATAGCATAAGCCCCTTGACGCCAGTCCTTAACCCG
CCACAGCCAAATAGGTGCCTACGACGATAAAAGCAATGGGCTcttgcaaa
aaaaatatatacccCCACCCTTATTTTGAGGAGTTCTTTTTGGAGAAggt
gaccccctggatattttttcaattttcaggacccacttattttgattatt
aaaatttgaagatttggtACTATACTACCCATCAAGATCAGGAAACACTC
CCACGAAGCTTATCTTTCAGTAAGCATAATCAACTTGAATATCCAAAACG
ATTTccaaaatcttgtttttaaacAAATGATGGCTAAATATCTCTATGCT
TCTTTTTCCAGATAAAAACGTTCGAGAAAATAACACGGGTGAAAAGACAG
AACCAGCAAAAGNGGCTAAATATCTCTATGCTTCTTTTTCCAGATAAAAA
CGTTCGAGAAAATAACACGGGTGAAAAGACAGAGCCAGCAAAAGTGCAAG
GATGCGTGGAAAAAGCGAACGCACGAAACCAAAACGGAGACGCTTTACAC
GAGGCCGCAAGAAAAGGATTAGACCAAGAGATTAAGGCGCTTTTAAAGAA
GGGGTTAAACGTTGATTCTTTGGATATGGAAGGAAACACACCACTTTTTT
ACGCTTCCAATAATGGCCAAGCAGGGACAGCTGTCATTCTACTCAAATAT
GAAGCCAACGTGAATCACAAATCAAATCACGGTTTCACAGCGCTCATGCA
CGCCGCATGGAAAGGTCACGTTGATTTAGTATCGCTACTGATCGCACATG
GTGCTGATGTAAAAATCGTTACCGCAAAGAACTATACGGCGTTATGTTTC
GCAACCTTAGGTGGTTTCGCAAAGGTGTCAATAATCTTACGCCAAGCGGA
CAACATTCTCAAAGATACTAAAGCCCCTTTATCTATTGGATTCGGACAAA
ATCTGAGAATAAAGAACTTAGAACACAATGTGAAACAGAGAAGTCTATAT
GGTACCACAAGTTTAGCATTAGACATGTTTTtcgtaaaaactttacaaaa
cagaaaaaaccgTCAGGAcagaaaatcgcgaaagttatGTCTAAGCTCAA
ATTTGTTTAAATTTAAAACCGGATTGCAGGGTTCTCCCCATCTGCCAGGG
GCATAAATTAATTTATAGTAACGATTTGCATATatttgtaagcaaaaaaa
tcGAATAGGAAAATgctaatttttataaaaattattaaatttttgaTACT
AGGCTGTACTTAGTTTTTGGTATCTAGAGCCTCTAATTGTTCTCATATAG
GTATTTTAAGTATTGTATaccttttttactatttttcagCCCGCTCAATG
TTCTCAAgtggttcaaatttttttttgcctcgTTGATCATAAAGTTTTTC
TAACAAAATATAGTGCCGAGTAGGATTAAACAAAGAAGGGCAAACAAAAA
TCTTACTTTATGGTTTCTTAGGGGGAAtatttctttaacttttttgggga
tCTTACTCTTCATGAGCTATGGCTTTTAGATTTCTGAAATCGGTACCGTA
ATTTTGTAATCGATCAACGTATCCACTTTCATTCTAAATCACATGTTAAA
AGGGAGCTCCTGATAATGTGATGGGTCGGTTTACAAAGTTGGTTGTTTGT
GTTTAAGAACCTGTTGTTTTCTACCAATAAGCCATTTTTCACTCCGCTGT
AAAAATTAGAGTAGGTagcaatttttataaaaaaatattttattcagTAA
TATATAAAACAAAAGCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024183-exon-sc0000478-1491911889:187263..189053 | TCONS_00024183-exon-sc0000478-1491911889:187263..189053 | Clytia hemisphaerica | exon |
| TCONS_00024183-exon-sc0000478-1510915933:187263..189053 | TCONS_00024183-exon-sc0000478-1510915933:187263..189053 | Clytia hemisphaerica | exon |
| TCONS_00024183-exon-sc0000478-1575043694:187263..189053 | TCONS_00024183-exon-sc0000478-1575043694:187263..189053 | Clytia hemisphaerica | exon |
| TCONS_00024183-exon-sc0000478-1491911889:189609..189695 | TCONS_00024183-exon-sc0000478-1491911889:189609..189695 | Clytia hemisphaerica | exon |
| TCONS_00024183-exon-sc0000478-1510915933:189609..189695 | TCONS_00024183-exon-sc0000478-1510915933:189609..189695 | Clytia hemisphaerica | exon |
| TCONS_00024183-exon-sc0000478-1575043694:189609..189695 | TCONS_00024183-exon-sc0000478-1575043694:189609..189695 | Clytia hemisphaerica | exon |
| TCONS_00024183-exon-sc0000478-1491911889:190156..191481 | TCONS_00024183-exon-sc0000478-1491911889:190156..191481 | Clytia hemisphaerica | exon |
| TCONS_00024183-exon-sc0000478-1510915933:190156..191481 | TCONS_00024183-exon-sc0000478-1510915933:190156..191481 | Clytia hemisphaerica | exon |
| TCONS_00024183-exon-sc0000478-1575043694:190156..191481 | TCONS_00024183-exon-sc0000478-1575043694:190156..191481 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000478 | supercontig | sc0000478:187263..191481 + |
Blast
BLAST of TCONS_00024183 vs. Swiss-Prot (Human)
Match: ANK2 (Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4) HSP 1 Score: 86.6557 bits (213), Expect = 5.740e-17 Identity = 52/130 (40.00%), Postives = 74/130 (56.92%), Query Frame = 3
Query: 1953 NARNQNG-DALHEAARKGLDQEIKALLKKGLNVDSLDMEGNTPLFYASNNGQAGTAVILLKYEANVNHKSNHGFTALMHAAWKGHVDLVSLLIAHGADVKIVTAKNYTALCFATLGGFAKVSIILRQADN 2339
N NQNG +ALH AA++G ++ LL +G +VDS +GNT L AS GQA +L+K AN+N +S +GFT L AA + H+D+V L+ +GA+ T +T L A G + IL + D
Sbjct: 58 NTCNQNGLNALHLAAKEGHVGLVQELLGRGSSVDSATKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVVKYLLENGANQSTATEDGFTPLAVALQQGHNQAVAILLENDT 187
The following BLAST results are available for this feature:
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