TCONS_00024172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024172
Unique NameTCONS_00024172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1727

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024172 ID=TCONS_00024172|Name=TCONS_00024172|organism=Clytia hemisphaerica|type=transcript|length=1727bp
gtTTTTTCAGGATATCTTAGGGAGATAGTGGCAATGAAAGTTCAAAGCGA
AATGAGCCCatatctaaaaatacaaaaagaacgTTACCGACTTTTTGATC
GATTTTCAAATGACGTAACAATCCATGGATTTCGTTATATGTTCGACCAA
CAACACTGGAGCAGACGGTTTTTATGGTTTCTTTTGAATACGCTCATCTT
TGCACTATCTTTCTTGTTATTTTATCAAATCATCGTCGACTTTGTTCAAT
ACAAGACGACCACCACACTCACAACCCTGCACGACGACATGGGAGAAATT
CAATTCCCTACTATTACTGTATGCCCCTTCAATTCTGCTTCTcaaactaa
actacaaaatatttttcgttcaTTAAACATGACTTTTGATCCAGCTTCTC
ACAAGTCCATTGAGGATCCACTTATAAAGCAAGCGTTGGCGAAATTCGTG
ACTCTAAAAGCTGCCAACATTACGAATCTTTACAGTGTCGCCGCTCTGTA
TCAACTAAACTACACCGATATGACATCAGGAGATATTCCTAAACAGTTTA
TGCAAACTCCCTGTCTGTTTTACGGTAAAGGATGCACGACGGAAGATTTC
AAGACGGTATACACATGGTTTGGGAGTTCAATGTGTTTTCAATTCAACTC
GTTCCGAAAGCATACAACTTCACGTAAACCGGCTACCTTATCACCAATCG
AAGGCTTCACTCTTCTTCTCGATCTCAAGCTATATGATGATTTCAGCTTC
GGTTTCCCTGCCCAGGGTATAAGTATCACTATCAGCTCTTATGGTCACCC
GTATAAAGTTTTTGATGGAACGACTTCATTTGTTAGTAGACCTGGTGATT
TGGCTTATGTCAAACTATCGTTGAAAAAGgCAATCAGGATACCACAGCCC
TTTCCAAACGGTTGTGGGGTAGAGGAGTATCAGATCATCCGAAGAGAATA
TCCATACACACAAGCCATGTGTTGGATGGATtgtattttacaaaaagtgT
ACATAAAGTGTGGCTGTGTTGGCTATGAAGTACAAGATGAAGTCACCAAC
GGCACGGAGATTTGTGGcttgaaggaaaatgaatgttatttaaagACCAG
AAGGAATTTCACCAAGACAAAAAGAGAGGATTGTTGGGCAAAGTGTCCAA
AACAGTGCGATGAGATTTCGTATCAAGTGTCTCTATCTTCCGGTAACCTT
GGCAATACTGGTATTTTCAACCGACTGTCACGGTTAAAAAGTTGGAATAA
AACTACTGAACAAGCGAGAGACTATGTCAGGAATAACATGGTGGGAATAC
TGATATCGTTTCAAGATTATTCGGTACTTGTTGAAGAATCATTAAGAACT
GTCACCTGGACCCATTTGATGGGATCTATAGGTGGAAGTGTTGGATTGTG
TCTTGGATTCAGTTTGATCACGGCTTTCGAATTCTTATTCTTTATCTTTG
ATTACGTCATGGTACCGTGCAGAATGAAATGATAATAATATTATCCATCA
GGAAGGTGATCTGCGGAATAGCATACCgtcgcgaatctaaaaatagacat
tgatttttatgtttgactgaaatccaatcccatcaccctttgcgtttatt
acgcttgcacgcaaattacactcaattacaaagaacaagtaataactttc
acgacttttgaattgagacgaaaaggattgtgggattgaatttcggtcaa
atgagagaagtaataatcatGACGTTT
Run BLAST on NCBI

protein sequence of TCONS_00024172-protein

>TCONS_00024172-protein ID=TCONS_00024172-protein|Name=TCONS_00024172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=493bp
VFSGYLREIVAMKVQSEMSPYLKIQKERYRLFDRFSNDVTIHGFRYMFDQ
QHWSRRFLWFLLNTLIFALSFLLFYQIIVDFVQYKTTTTLTTLHDDMGEI
QFPTITVCPFNSASQTKLQNIFRSLNMTFDPASHKSIEDPLIKQALAKFV
TLKAANITNLYSVAALYQLNYTDMTSGDIPKQFMQTPCLFYGKGCTTEDF
KTVYTWFGSSMCFQFNSFRKHTTSRKPATLSPIEGFTLLLDLKLYDDFSF
GFPAQGISITISSYGHPYKVFDGTTSFVSRPGDLAYVKLSLKKAIRIPQP
FPNGCGVEEYQIIRREYPYTQAMCWMDCILQKVYIKCGCVGYEVQDEVTN
GTEICGLKENECYLKTRRNFTKTKREDCWAKCPKQCDEISYQVSLSSGNL
GNTGIFNRLSRLKSWNKTTEQARDYVRNNMVGILISFQDYSVLVEESLRT
VTWTHLMGSIGGSVGLCLGFSLITAFEFLFFIFDYVMVPCRMK
Run BLAST on NCBI

transcript from alignment at sc0000478:77350..81061+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024172 ID=TCONS_00024172|Name=TCONS_00024172|organism=Clytia hemisphaerica|type=transcript|length=3712bp|location=Sequence derived from alignment at sc0000478:77350..81061+ (Clytia hemisphaerica)
gtTTTTTCAGGATATCTTAGGGAGATAGTGGCAATGAAAGTTCAAAGCGA
AATGAGCCCatatctaaaaatacaaaaagaacgTTACCGACTTTTTGATC
GATTTTCAAATGACGTAACAATCCATGGATTTCGTTATATGTTCGACCAA
CAACACTGGAGCAGACGGTTTTTATGGTTTCTTTTGAATACGCTCATCTT
TGCACTATCTTTCTTGTTATTTTATCAAATCATCGTCGACTTTGTTCAAT
ACAAGACGACCACCACACTCACAACCCTGCACGACGACATGGGAGAAATT
CAATTCCCTACTATTACTGTATGCCCCTTCAATTCTGCTTCTcaaactaa
actacaaaatatttttcgttcaTTAAACATGACTTTTGATCCAGCTTCTC
ACAAGTCCATTGAGGATCCACTTATAAAGCAAGCGTTGGCGAAATTCGTG
ACTCTAAAAGCTGCCAACATTACGAATCTTTACAGTGTCGCCGCTCTGTA
TCAACTAAACTACACCGATATGACATCAGGAGATATTCCTAAACAGTTTA
TGCAAACTCCCTGTCTGTTTTACGGTAAAGGATGCACGACGGAAGATTTC
AAGACGGTATACACATGGTTTGGGAGTTCAATGTGTTTTCAATTCAACTC
GTTCCGAAAGCATACAACTTCACGTAAACCGGCTACCTTATCACCAATCG
AAGGCTTCACTCTTCTTCTCGATCTCAAGCTATATGATGATTTCAGCTTC
GGTTTCCCTGCCCAGGGTATAAGTATCACTATCAGCTCTTATGGTCACCC
GTATAAAGTTTTTGATGGAACGACTTCATTTGTTAGTAGACCTGGTGATT
TGGCTTATGTCAAACTATCGTTGAAAAAGGTAATCCCGCGTTTCTTATAA
TGAACACAGTCCAAGACATTCTCACCTGATAAACTCTCATCTTCTCAAAT
GCCATATCTTTATCTTAGTCTAAAGGAAACCTCTGATAGTTTCAACCCGA
AAGCTGGAGTCAAATCTCCTATGAAGGATTTAAAGACATTTTCTACTTAG
TTGCACGAACCACCTGGTTTTCATACAAATGCTGGATTGGAAGTAACATT
TATCgccagaatttgaaaaaatgtaacGTAAGACGTGAAAACAGAGAaag
cgctagattcaatccgtctgTCGTCCAATTTGTGGTccaaattttaaggc
ttaactTTTTCATGCTTGGTAAATGTTGGGGACTGTTGGGGATTCCTTTC
TAGCTTGCGGCTTGAAATTCAATGGTTCTGATATTCCATAATCTCTAAGA
CTTAGTCaacaaaaaaagttatattatttctttaaaaaaatatttttttt
gtaggCAATCAGGATACCACAGCCCTTTCCAAACGGTTGTGGGGTAGAGG
AGTATCAGATCATCCGAAGAGAATATCCATACACACAAGCCATGTGTTGG
ATGGATtgtattttacaaaaagtgTACATAAAGTGTGGCTGTGTTGGCTA
TGAAGTACAAGATGAAGTCACCAACGGTTGGTtttcttgctttgactttt
ttaTCTCTAATATTAAAGTCGATGATTAGGCAGACATTGAAAATCGTTAC
CTATGTACTAGTAGACAATCCTTGAATGTCATATCTATGTTGCTTTCTTA
AAATTGTCTAACTAAATTATGCCCTCTCCCGATGGTAGTAAAATGAGATC
CCAAGCTGTTCTCacaccttttttattttatgaaactCGCTAAAGTCTTT
GCACCAAGAATATATTACTAAATCTTGTCGATCGTTTATTTTTAAAGGCA
CGGAGATTTGTGGcttgaaggaaaatgaatgttatttaaagACCAGAAGT
AAGTTCATTAAGGGGGTTCATGGTTGGAGGAGAAGCAGAATcgcggccct
tttttcggacgagtggcaaatttgcgaaaacttagacggaattacggaaa
ttgggttctccgACGCCGacattagacaattttagtgcggaaaaacggaa
tttagctaAAAGTTTTGTGGAATTTCGGAAGtggcaaaaaatattaaaaa
atcgtggaattttgaatttcaaaagaatttttggtGACGGAATTTCGGTT
CATTTTTAGACGGTTAGACGGAAATtagcggaattgcggaatcgggtaaa
ACTGAAAAACTGAACTGAACTTGTATAAACACTTTGTACAAGAAGTTTCT
CTTTTCATTCACAAATGTCTCCATTTCCTCTCACAGGGAATTTCACCAAG
ACAAAAAGAGAGGATTGTTGGGCAAAGTGTCCAAAACAGTGCGATGAGAT
TTCGTATCAAGTGTCTCTATCTTCCGGTAACCTTGGCAATACTGGTATTT
TCAACCGACTGTCACGGTTAAAAAGTTGGAATAAAACTACTGAACAAGCG
AGAGACTATGTCAGGTTAGTGAGTGATTAAAGTTGTGAttcttataaact
ttactctCTTACTATTATGCAAAGCTCATTATGTTTGACAATTTCCGAGA
AAACACATGGATATCTATATCACAACAGGAAATTTTATATCACTTTGTTG
GTACGATTTACTTAGTGTcatttccttaaaaaagccataCGATTCCTGGC
AGGAAAAAGTACAATAAAAGCTACGTGTTTCTGGATCAGCCAAGCTATAT
CTATATACCTTCGCAAAAATAGATCACATCGACCTCTTTTTTCTCACAGG
AATAACATGGTGGGAATACTGATATCGTTTCAAGATTATTCGGTACTTGT
TGAAGAATCATTAAGAACTGTCACCTGGACCCATTTGATGGGTaggatta
tttttattttcaatttgcaTAATCTTTGGATGGGATTGGGATGTCACTTG
TTCCATCCTATCTGTGAGGAGGGTTTTTaaatggttaaaaactttttgat
acaccccttttcacagacccactgggaacccttcccattggaaaaatAGG
TAAAAACATCGTCCCTAGTAGAAAATTACACTCTAATAAAAAACAAGGGA
ATATcgatccccattgagttttggtCTCTTATTTTTAACCCCACTGGTCG
ACAaaattccaccgggtctgtgagaaggggggtGTATTGATATCTTACTT
GGAAAAATATTTAGCTCGGTGTATTTCGAAAAAACTTTCCACTCTGCAAA
CAAACAAACCGAATAACAGGCTTTTCACGGCGCGGTCGACTTTTCAGGGt
ctggtaatgaatttacaagaAAACATCTAAAAATGGACTCCGTTTCTTTC
CTTACACGACTATTAGTTATAACTCGTCGATAAACTATAGAATCAACCCT
CGTTGAAGTTTTTCTCCCCAAAATCAATTCTGTTTTCCTTGTTACGTCAT
TCCATAGGATCTATAGGTGGAAGTGTTGGATTGTGTCTTGGATTCAGTTT
GATCACGGCTTTCGAATTCTTATTCTTTATCTTTGATTACGTCATGGTAC
CGTGCAGAATGAAATGATAATAATATTATCCATCAGGAAGGTGATCTGCG
GAATAGCATACCgtcgcgaatctaaaaatagacattgatttttatgtttg
actgaaatccaatcccatcaccctttgcgtttattacgcttgcacgcaaa
ttacactcaattacaaagaacaagtaataactttcacgacttttgaattg
agacgaaaaggattgtgggattgaatttcggtcaaatgagagaagtaata
atcatGACGTTT

Coding sequence (CDS) from alignment at sc0000478:77350..81061+

>TCONS_00024172 ID=TCONS_00024172|Name=TCONS_00024172|organism=Clytia hemisphaerica|type=CDS|length=8892bp|location=Sequence derived from alignment at sc0000478:77350..81061+ (Clytia hemisphaerica)
gtTTTTTCAGGATATCTTAGGGAGATAGTGGCAATGAAAGTTCAAAGCGA
AATGAGCCCatatctaaaaatacaaaaagaacgTTACCGACTTTTTGATC
GATTTTCAAATGACGTAACAATCCATGGATTTCGTTATATGTTCGACCAA
CAACACTGGAGCAGACGGTTTTTATGGTTTCTTTTGAATACGCTCATCTT
TGCACTATCTTTCTTGTTATTTTATCAAATCATCGTCGACTTTGTTCAAT
ACAAGACGACCACCACACTCACAACCCTGCACGACGACATGGGAGAAATT
CAATTCCCTACTATTACTGTATGCCCCTTCAATTCTGCTTCTcaaactaa
actacaaaatatttttcgttcaTTAAACATGACTTTTGATCCAGCTTCTC
ACAAGTCCATTGAGGATCCACTTATAAAGCAAGCGTTGGCGAAATTCGTG
ACTCTAAAAGCTGCCAACATTACGAATCTTTACAGTGTCGCCGCTCTGTA
TCAACTAAACTACACCGATATGACATCAGGAGATATTCCTAAACAGTTTA
TGCAAACTCCCTGTCTGTTTTACGGTAAAGGATGCACGACGGAAGATTTC
AAGACGGTATACACATGGTTTGGGAGTTCAATGTGTTTTCAATTCAACTC
GTTCCGAAAGCATACAACTTCACGTAAACCGGCTACCTTATCACCAATCG
AAGGCTTCACTCTTCTTCTCGATCTCAAGCTATATGATGATTTCAGCTTC
GGTTTCCCTGCCCAGGGTATAAGTATCACTATCAGCTCTTATGGTCACCC
GTATAAAGTTTTTGATGGAACGACTTCATTTGTTAGTAGACCTGGTGATT
TGGCTTATGTCAAACTATCGTTGAAAAAGgCAATCAGGATACCACAGCCC
TTTCCAAACGGTTGTGGGGTAGAGGAGTATCAGATCATCCGAAGAGAATA
TCCATACACACAAGCCATGTGTTGGATGGATtgtattttacaaaaagtgT
ACATAAAGTGTGGCTGTGTTGGCTATGAAGTACAAGATGAAGTCACCAAC
GGCACGGAGATTTGTGGcttgaaggaaaatgaatgttatttaaagACCAG
AAGGAATTTCACCAAGACAAAAAGAGAGGATTGTTGGGCAAAGTGTCCAA
AACAGTGCGATGAGATTTCGTATCAAGTGTCTCTATCTTCCGGTAACCTT
GGCAATACTGGTATTTTCAACCGACTGTCACGGTTAAAAAGTTGGAATAA
AACTACTGAACAAGCGAGAGACTATGTCAGGAATAACATGGTGGGAATAC
TGATATCGTTTCAAGATTATTCGGTACTTGTTGAAGAATCATTAAGAACT
GTCACCTGGACCCATTTGATGGGATCTATAGGTGGAAGTGTTGGATTGTG
TCTTGGATTCAGTTTGATCACGGCTTTCGAATTCTTATTCTTTATCTTTG
ATTACGTCATGGTACCGTGCAGAATGAAATGAgtTTTTTCAGGATATCTT
AGGGAGATAGTGGCAATGAAAGTTCAAAGCGAAATGAGCCCatatctaaa
aatacaaaaagaacgTTACCGACTTTTTGATCGATTTTCAAATGACGTAA
CAATCCATGGATTTCGTTATATGTTCGACCAACAACACTGGAGCAGACGG
TTTTTATGGTTTCTTTTGAATACGCTCATCTTTGCACTATCTTTCTTGTT
ATTTTATCAAATCATCGTCGACTTTGTTCAATACAAGACGACCACCACAC
TCACAACCCTGCACGACGACATGGGAGAAATTCAATTCCCTACTATTACT
GTATGCCCCTTCAATTCTGCTTCTcaaactaaactacaaaatatttttcg
ttcaTTAAACATGACTTTTGATCCAGCTTCTCACAAGTCCATTGAGGATC
CACTTATAAAGCAAGCGTTGGCGAAATTCGTGACTCTAAAAGCTGCCAAC
ATTACGAATCTTTACAGTGTCGCCGCTCTGTATCAACTAAACTACACCGA
TATGACATCAGGAGATATTCCTAAACAGTTTATGCAAACTCCCTGTCTGT
TTTACGGTAAAGGATGCACGACGGAAGATTTCAAGACGGTATACACATGG
TTTGGGAGTTCAATGTGTTTTCAATTCAACTCGTTCCGAAAGCATACAAC
TTCACGTAAACCGGCTACCTTATCACCAATCGAAGGCTTCACTCTTCTTC
TCGATCTCAAGCTATATGATGATTTCAGCTTCGGTTTCCCTGCCCAGGGT
ATAAGTATCACTATCAGCTCTTATGGTCACCCGTATAAAGTTTTTGATGG
AACGACTTCATTTGTTAGTAGACCTGGTGATTTGGCTTATGTCAAACTAT
CGTTGAAAAAGgCAATCAGGATACCACAGCCCTTTCCAAACGGTTGTGGG
GTAGAGGAGTATCAGATCATCCGAAGAGAATATCCATACACACAAGCCAT
GTGTTGGATGGATtgtattttacaaaaagtgTACATAAAGTGTGGCTGTG
TTGGCTATGAAGTACAAGATGAAGTCACCAACGGCACGGAGATTTGTGGc
ttgaaggaaaatgaatgttatttaaagACCAGAAGGAATTTCACCAAGAC
AAAAAGAGAGGATTGTTGGGCAAAGTGTCCAAAACAGTGCGATGAGATTT
CGTATCAAGTGTCTCTATCTTCCGGTAACCTTGGCAATACTGGTATTTTC
AACCGACTGTCACGGTTAAAAAGTTGGAATAAAACTACTGAACAAGCGAG
AGACTATGTCAGGAATAACATGGTGGGAATACTGATATCGTTTCAAGATT
ATTCGGTACTTGTTGAAGAATCATTAAGAACTGTCACCTGGACCCATTTG
ATGGGATCTATAGGTGGAAGTGTTGGATTGTGTCTTGGATTCAGTTTGAT
CACGGCTTTCGAATTCTTATTCTTTATCTTTGATTACGTCATGGTACCGT
GCAGAATGAAATGAgtTTTTTCAGGATATCTTAGGGAGATAGTGGCAATG
AAAGTTCAAAGCGAAATGAGCCCatatctaaaaatacaaaaagaacgTTA
CCGACTTTTTGATCGATTTTCAAATGACGTAACAATCCATGGATTTCGTT
ATATGTTCGACCAACAACACTGGAGCAGACGGTTTTTATGGTTTCTTTTG
AATACGCTCATCTTTGCACTATCTTTCTTGTTATTTTATCAAATCATCGT
CGACTTTGTTCAATACAAGACGACCACCACACTCACAACCCTGCACGACG
ACATGGGAGAAATTCAATTCCCTACTATTACTGTATGCCCCTTCAATTCT
GCTTCTcaaactaaactacaaaatatttttcgttcaTTAAACATGACTTT
TGATCCAGCTTCTCACAAGTCCATTGAGGATCCACTTATAAAGCAAGCGT
TGGCGAAATTCGTGACTCTAAAAGCTGCCAACATTACGAATCTTTACAGT
GTCGCCGCTCTGTATCAACTAAACTACACCGATATGACATCAGGAGATAT
TCCTAAACAGTTTATGCAAACTCCCTGTCTGTTTTACGGTAAAGGATGCA
CGACGGAAGATTTCAAGACGGTATACACATGGTTTGGGAGTTCAATGTGT
TTTCAATTCAACTCGTTCCGAAAGCATACAACTTCACGTAAACCGGCTAC
CTTATCACCAATCGAAGGCTTCACTCTTCTTCTCGATCTCAAGCTATATG
ATGATTTCAGCTTCGGTTTCCCTGCCCAGGGTATAAGTATCACTATCAGC
TCTTATGGTCACCCGTATAAAGTTTTTGATGGAACGACTTCATTTGTTAG
TAGACCTGGTGATTTGGCTTATGTCAAACTATCGTTGAAAAAGgCAATCA
GGATACCACAGCCCTTTCCAAACGGTTGTGGGGTAGAGGAGTATCAGATC
ATCCGAAGAGAATATCCATACACACAAGCCATGTGTTGGATGGATtgtat
tttacaaaaagtgTACATAAAGTGTGGCTGTGTTGGCTATGAAGTACAAG
ATGAAGTCACCAACGGCACGGAGATTTGTGGcttgaaggaaaatgaatgt
tatttaaagACCAGAAGGAATTTCACCAAGACAAAAAGAGAGGATTGTTG
GGCAAAGTGTCCAAAACAGTGCGATGAGATTTCGTATCAAGTGTCTCTAT
CTTCCGGTAACCTTGGCAATACTGGTATTTTCAACCGACTGTCACGGTTA
AAAAGTTGGAATAAAACTACTGAACAAGCGAGAGACTATGTCAGGAATAA
CATGGTGGGAATACTGATATCGTTTCAAGATTATTCGGTACTTGTTGAAG
AATCATTAAGAACTGTCACCTGGACCCATTTGATGGGATCTATAGGTGGA
AGTGTTGGATTGTGTCTTGGATTCAGTTTGATCACGGCTTTCGAATTCTT
ATTCTTTATCTTTGATTACGTCATGGTACCGTGCAGAATGAAATGAgtTT
TTTCAGGATATCTTAGGGAGATAGTGGCAATGAAAGTTCAAAGCGAAATG
AGCCCatatctaaaaatacaaaaagaacgTTACCGACTTTTTGATCGATT
TTCAAATGACGTAACAATCCATGGATTTCGTTATATGTTCGACCAACAAC
ACTGGAGCAGACGGTTTTTATGGTTTCTTTTGAATACGCTCATCTTTGCA
CTATCTTTCTTGTTATTTTATCAAATCATCGTCGACTTTGTTCAATACAA
GACGACCACCACACTCACAACCCTGCACGACGACATGGGAGAAATTCAAT
TCCCTACTATTACTGTATGCCCCTTCAATTCTGCTTCTcaaactaaacta
caaaatatttttcgttcaTTAAACATGACTTTTGATCCAGCTTCTCACAA
GTCCATTGAGGATCCACTTATAAAGCAAGCGTTGGCGAAATTCGTGACTC
TAAAAGCTGCCAACATTACGAATCTTTACAGTGTCGCCGCTCTGTATCAA
CTAAACTACACCGATATGACATCAGGAGATATTCCTAAACAGTTTATGCA
AACTCCCTGTCTGTTTTACGGTAAAGGATGCACGACGGAAGATTTCAAGA
CGGTATACACATGGTTTGGGAGTTCAATGTGTTTTCAATTCAACTCGTTC
CGAAAGCATACAACTTCACGTAAACCGGCTACCTTATCACCAATCGAAGG
CTTCACTCTTCTTCTCGATCTCAAGCTATATGATGATTTCAGCTTCGGTT
TCCCTGCCCAGGGTATAAGTATCACTATCAGCTCTTATGGTCACCCGTAT
AAAGTTTTTGATGGAACGACTTCATTTGTTAGTAGACCTGGTGATTTGGC
TTATGTCAAACTATCGTTGAAAAAGgCAATCAGGATACCACAGCCCTTTC
CAAACGGTTGTGGGGTAGAGGAGTATCAGATCATCCGAAGAGAATATCCA
TACACACAAGCCATGTGTTGGATGGATtgtattttacaaaaagtgTACAT
AAAGTGTGGCTGTGTTGGCTATGAAGTACAAGATGAAGTCACCAACGGCA
CGGAGATTTGTGGcttgaaggaaaatgaatgttatttaaagACCAGAAGG
AATTTCACCAAGACAAAAAGAGAGGATTGTTGGGCAAAGTGTCCAAAACA
GTGCGATGAGATTTCGTATCAAGTGTCTCTATCTTCCGGTAACCTTGGCA
ATACTGGTATTTTCAACCGACTGTCACGGTTAAAAAGTTGGAATAAAACT
ACTGAACAAGCGAGAGACTATGTCAGGAATAACATGGTGGGAATACTGAT
ATCGTTTCAAGATTATTCGGTACTTGTTGAAGAATCATTAAGAACTGTCA
CCTGGACCCATTTGATGGGATCTATAGGTGGAAGTGTTGGATTGTGTCTT
GGATTCAGTTTGATCACGGCTTTCGAATTCTTATTCTTTATCTTTGATTA
CGTCATGGTACCGTGCAGAATGAAATGAgtTTTTTCAGGATATCTTAGGG
AGATAGTGGCAATGAAAGTTCAAAGCGAAATGAGCCCatatctaaaaata
caaaaagaacgTTACCGACTTTTTGATCGATTTTCAAATGACGTAACAAT
CCATGGATTTCGTTATATGTTCGACCAACAACACTGGAGCAGACGGTTTT
TATGGTTTCTTTTGAATACGCTCATCTTTGCACTATCTTTCTTGTTATTT
TATCAAATCATCGTCGACTTTGTTCAATACAAGACGACCACCACACTCAC
AACCCTGCACGACGACATGGGAGAAATTCAATTCCCTACTATTACTGTAT
GCCCCTTCAATTCTGCTTCTcaaactaaactacaaaatatttttcgttca
TTAAACATGACTTTTGATCCAGCTTCTCACAAGTCCATTGAGGATCCACT
TATAAAGCAAGCGTTGGCGAAATTCGTGACTCTAAAAGCTGCCAACATTA
CGAATCTTTACAGTGTCGCCGCTCTGTATCAACTAAACTACACCGATATG
ACATCAGGAGATATTCCTAAACAGTTTATGCAAACTCCCTGTCTGTTTTA
CGGTAAAGGATGCACGACGGAAGATTTCAAGACGGTATACACATGGTTTG
GGAGTTCAATGTGTTTTCAATTCAACTCGTTCCGAAAGCATACAACTTCA
CGTAAACCGGCTACCTTATCACCAATCGAAGGCTTCACTCTTCTTCTCGA
TCTCAAGCTATATGATGATTTCAGCTTCGGTTTCCCTGCCCAGGGTATAA
GTATCACTATCAGCTCTTATGGTCACCCGTATAAAGTTTTTGATGGAACG
ACTTCATTTGTTAGTAGACCTGGTGATTTGGCTTATGTCAAACTATCGTT
GAAAAAGgCAATCAGGATACCACAGCCCTTTCCAAACGGTTGTGGGGTAG
AGGAGTATCAGATCATCCGAAGAGAATATCCATACACACAAGCCATGTGT
TGGATGGATtgtattttacaaaaagtgTACATAAAGTGTGGCTGTGTTGG
CTATGAAGTACAAGATGAAGTCACCAACGGCACGGAGATTTGTGGcttga
aggaaaatgaatgttatttaaagACCAGAAGGAATTTCACCAAGACAAAA
AGAGAGGATTGTTGGGCAAAGTGTCCAAAACAGTGCGATGAGATTTCGTA
TCAAGTGTCTCTATCTTCCGGTAACCTTGGCAATACTGGTATTTTCAACC
GACTGTCACGGTTAAAAAGTTGGAATAAAACTACTGAACAAGCGAGAGAC
TATGTCAGGAATAACATGGTGGGAATACTGATATCGTTTCAAGATTATTC
GGTACTTGTTGAAGAATCATTAAGAACTGTCACCTGGACCCATTTGATGG
GATCTATAGGTGGAAGTGTTGGATTGTGTCTTGGATTCAGTTTGATCACG
GCTTTCGAATTCTTATTCTTTATCTTTGATTACGTCATGGTACCGTGCAG
AATGAAATGAgtTTTTTCAGGATATCTTAGGGAGATAGTGGCAATGAAAG
TTCAAAGCGAAATGAGCCCatatctaaaaatacaaaaagaacgTTACCGA
CTTTTTGATCGATTTTCAAATGACGTAACAATCCATGGATTTCGTTATAT
GTTCGACCAACAACACTGGAGCAGACGGTTTTTATGGTTTCTTTTGAATA
CGCTCATCTTTGCACTATCTTTCTTGTTATTTTATCAAATCATCGTCGAC
TTTGTTCAATACAAGACGACCACCACACTCACAACCCTGCACGACGACAT
GGGAGAAATTCAATTCCCTACTATTACTGTATGCCCCTTCAATTCTGCTT
CTcaaactaaactacaaaatatttttcgttcaTTAAACATGACTTTTGAT
CCAGCTTCTCACAAGTCCATTGAGGATCCACTTATAAAGCAAGCGTTGGC
GAAATTCGTGACTCTAAAAGCTGCCAACATTACGAATCTTTACAGTGTCG
CCGCTCTGTATCAACTAAACTACACCGATATGACATCAGGAGATATTCCT
AAACAGTTTATGCAAACTCCCTGTCTGTTTTACGGTAAAGGATGCACGAC
GGAAGATTTCAAGACGGTATACACATGGTTTGGGAGTTCAATGTGTTTTC
AATTCAACTCGTTCCGAAAGCATACAACTTCACGTAAACCGGCTACCTTA
TCACCAATCGAAGGCTTCACTCTTCTTCTCGATCTCAAGCTATATGATGA
TTTCAGCTTCGGTTTCCCTGCCCAGGGTATAAGTATCACTATCAGCTCTT
ATGGTCACCCGTATAAAGTTTTTGATGGAACGACTTCATTTGTTAGTAGA
CCTGGTGATTTGGCTTATGTCAAACTATCGTTGAAAAAGgCAATCAGGAT
ACCACAGCCCTTTCCAAACGGTTGTGGGGTAGAGGAGTATCAGATCATCC
GAAGAGAATATCCATACACACAAGCCATGTGTTGGATGGATtgtatttta
caaaaagtgTACATAAAGTGTGGCTGTGTTGGCTATGAAGTACAAGATGA
AGTCACCAACGGCACGGAGATTTGTGGcttgaaggaaaatgaatgttatt
taaagACCAGAAGGAATTTCACCAAGACAAAAAGAGAGGATTGTTGGGCA
AAGTGTCCAAAACAGTGCGATGAGATTTCGTATCAAGTGTCTCTATCTTC
CGGTAACCTTGGCAATACTGGTATTTTCAACCGACTGTCACGGTTAAAAA
GTTGGAATAAAACTACTGAACAAGCGAGAGACTATGTCAGGAATAACATG
GTGGGAATACTGATATCGTTTCAAGATTATTCGGTACTTGTTGAAGAATC
ATTAAGAACTGTCACCTGGACCCATTTGATGGGATCTATAGGTGGAAGTG
TTGGATTGTGTCTTGGATTCAGTTTGATCACGGCTTTCGAATTCTTATTC
TTTATCTTTGATTACGTCATGGTACCGTGCAGAATGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013567XLOC_013567Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024172-proteinTCONS_00024172-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024172-exon-sc0000478-1491911889:77350..78228TCONS_00024172-exon-sc0000478-1491911889:77350..78228Clytia hemisphaericaexon
TCONS_00024172-exon-sc0000478-1510915933:77350..78228TCONS_00024172-exon-sc0000478-1510915933:77350..78228Clytia hemisphaericaexon
TCONS_00024172-exon-sc0000478-1575043694:77350..78228TCONS_00024172-exon-sc0000478-1575043694:77350..78228Clytia hemisphaericaexon
TCONS_00024172-exon-sc0000478-1491911889:78704..78875TCONS_00024172-exon-sc0000478-1491911889:78704..78875Clytia hemisphaericaexon
TCONS_00024172-exon-sc0000478-1510915933:78704..78875TCONS_00024172-exon-sc0000478-1510915933:78704..78875Clytia hemisphaericaexon
TCONS_00024172-exon-sc0000478-1575043694:78704..78875TCONS_00024172-exon-sc0000478-1575043694:78704..78875Clytia hemisphaericaexon
TCONS_00024172-exon-sc0000478-1491911889:79147..79197TCONS_00024172-exon-sc0000478-1491911889:79147..79197Clytia hemisphaericaexon
TCONS_00024172-exon-sc0000478-1510915933:79147..79197TCONS_00024172-exon-sc0000478-1510915933:79147..79197Clytia hemisphaericaexon
TCONS_00024172-exon-sc0000478-1575043694:79147..79197TCONS_00024172-exon-sc0000478-1575043694:79147..79197Clytia hemisphaericaexon
TCONS_00024172-exon-sc0000478-1491911889:79586..79763TCONS_00024172-exon-sc0000478-1491911889:79586..79763Clytia hemisphaericaexon
TCONS_00024172-exon-sc0000478-1510915933:79586..79763TCONS_00024172-exon-sc0000478-1510915933:79586..79763Clytia hemisphaericaexon
TCONS_00024172-exon-sc0000478-1575043694:79586..79763TCONS_00024172-exon-sc0000478-1575043694:79586..79763Clytia hemisphaericaexon
TCONS_00024172-exon-sc0000478-1491911889:80049..80140TCONS_00024172-exon-sc0000478-1491911889:80049..80140Clytia hemisphaericaexon
TCONS_00024172-exon-sc0000478-1510915933:80049..80140TCONS_00024172-exon-sc0000478-1510915933:80049..80140Clytia hemisphaericaexon
TCONS_00024172-exon-sc0000478-1575043694:80049..80140TCONS_00024172-exon-sc0000478-1575043694:80049..80140Clytia hemisphaericaexon
TCONS_00024172-exon-sc0000478-1491911889:80707..81061TCONS_00024172-exon-sc0000478-1491911889:80707..81061Clytia hemisphaericaexon
TCONS_00024172-exon-sc0000478-1510915933:80707..81061TCONS_00024172-exon-sc0000478-1510915933:80707..81061Clytia hemisphaericaexon
TCONS_00024172-exon-sc0000478-1575043694:80707..81061TCONS_00024172-exon-sc0000478-1575043694:80707..81061Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000478supercontigsc0000478:77350..81061 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.102449	0	0	0.137157	0.198251	0.0718753	0.0494502	0.111344	0.814051	0.709081	0.0804043	0.124207	0.536157	0.743074	1.68459	2.62265	0.703009	0.947145	0	0	1.04406	0.93928	0.144375	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001873ENaC
Vocabulary: Biological Process
TermDefinition
GO:0006814sodium ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005272sodium channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006814 sodium ion transport
cellular_component GO:0016020 membrane
molecular_function GO:0005272 sodium channel activity
Blast
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BLAST of TCONS_00024172 vs. Swiss-Prot (Human)
Match: ASIC5 (Acid-sensing ion channel 5 OS=Homo sapiens GN=ASIC5 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.052e-21
Identity = 85/316 (26.90%), Postives = 142/316 (44.94%), Query Frame = 1 
Query:  562 CLFYGKGCTTEDFKTVYTWFGSSMCFQFNSFRKHTTSRKPATLSPIEGFTLLLDLK---LYDDFSFGFPAQGISITISSYGHPYKV--FDGTTSFVSRPGDLAYVKLSLKKAIRIPQPFPNGCGVEEYQIIRREYPYTQAMCWMDCILQKVYIKCGCV-----GYEVQ----------DEVTNGTEICGLKENECYLKTRRNFTKTKREDCWAKCPKQCDEISYQVSLSSGNLGNTGIFNRLSRLKSWNKTTEQARDYVRNNMVGILISFQDYSVLVEESLRTVTWTHLMGSIGGSVGLCLGFSLITAFEFLFFIF 1449
            C F+GK C+ +DF  V+T +G+  CF FN        RK +      G +LL ++      D+ + GF   GI   I S   P KV  FDG    +S  G   + ++++++   + Q +P G      + ++    Y+ + C  +C  Q +  +CGCV     GY ++            V +  E   L    C + T             + CP  C+EI Y  ++S  +      F     LK  +K   Q+R Y+R N+V I I++ D +  + +  + V+ + L+  +GG +GL  G SLIT  E + ++F
Sbjct:  185 CEFFGKPCSPKDFAHVFTEYGN--CFTFNHGETLQAKRKVSVSG--RGLSLLFNVNQEAFTDNPALGFVDAGIIFVIHS---PKKVPQFDG-LGLLSPVG--MHARVTIRQVKTVHQEYPWGECNPNIK-LQNFSSYSTSGCLKECKAQHIKKQCGCVPFLLPGYGIECDLQKYFSCVSPVLDHIEFKDL----CTVGTHN-----------SSCPVSCEEIEYPATISYSS------FPSQKALKYLSKKLNQSRKYIRENLVKIEINYSDLNYKITQQQKAVSVSELLADLGGQLGLFCGASLITIIEIIEYLF 468
The following BLAST results are available for this feature:
BLAST of TCONS_00024172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASIC55.052e-2126.90Acid-sensing ion channel 5 OS=Homo sapiens GN=ASIC... [more]
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