TCONS_00024172-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00024172-protein
Unique Name	TCONS_00024172-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	493

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00024172-protein ID=TCONS_00024172-protein|Name=TCONS_00024172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=493bp
VFSGYLREIVAMKVQSEMSPYLKIQKERYRLFDRFSNDVTIHGFRYMFDQ
QHWSRRFLWFLLNTLIFALSFLLFYQIIVDFVQYKTTTTLTTLHDDMGEI
QFPTITVCPFNSASQTKLQNIFRSLNMTFDPASHKSIEDPLIKQALAKFV
TLKAANITNLYSVAALYQLNYTDMTSGDIPKQFMQTPCLFYGKGCTTEDF
KTVYTWFGSSMCFQFNSFRKHTTSRKPATLSPIEGFTLLLDLKLYDDFSF
GFPAQGISITISSYGHPYKVFDGTTSFVSRPGDLAYVKLSLKKAIRIPQP
FPNGCGVEEYQIIRREYPYTQAMCWMDCILQKVYIKCGCVGYEVQDEVTN
GTEICGLKENECYLKTRRNFTKTKREDCWAKCPKQCDEISYQVSLSSGNL
GNTGIFNRLSRLKSWNKTTEQARDYVRNNMVGILISFQDYSVLVEESLRT
VTWTHLMGSIGGSVGLCLGFSLITAFEFLFFIFDYVMVPCRMK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_013567	XLOC_013567	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00024172	TCONS_00024172	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001873	ENaC

Vocabulary: **Biological Process**
Term	Definition
GO:0006814	sodium ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005272	sodium channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006814	sodium ion transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005272	sodium channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001873	Epithelial sodium channel	PRINTS	PR01078	AMINACHANNEL	coord: 185..196 score: 33.33 coord: 319..330 score: 30.0 coord: 382..402 score: 23.62 coord: 56..73 score: 23.33 coord: 461..477 score: 40.71
IPR001873	Epithelial sodium channel	PFAM	PF00858	ASC	coord: 35..481 e-value: 7.1E-63 score: 213.0
None	No IPR available	GENE3D	1.10.287.770		coord: 402..487 e-value: 6.2E-13 score: 48.4 coord: 40..211 e-value: 2.6E-5 score: 24.0
None	No IPR available	GENE3D	1.10.287.820		coord: 297..386 e-value: 4.4E-8 score: 33.2

Blast

[Close]

BLAST of TCONS_00024172-protein vs. Swiss-Prot (Human)
Match: ASIC5 (Acid-sensing ion channel 5 OS=Homo sapiens GN=ASIC5 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.068e-23
Identity = 115/482 (23.86%), Postives = 205/482 (42.53%), Query Frame = 0

Query:   27 ERYRLFDRFSNDVTIHGFRYMFDQQHWSRRFLWFLLNTLIFALSFLLFYQIIVDFVQYKTTTTLTTLHDDMGEIQFPTITVCPFNSASQTKLQNIFRSLNMTFDPASHK-SIEDPLIKQALAKFVTLKAANITNLYSVAAL----YQLNYTDMTSGDIPKQFMQTPCLFYGKGCTTEDFKTVYTWFGSSMCFQFNSFRKHTTSRKPATLSPIEGFTLLLDLK---LYDDFSFGFPAQGISITISSYGHPYKV--FDGTTSFVSRPGDLAYVKLSLKKAIRIPQPFPNGCGVEEYQIIRREYPYTQAMCWMDCILQKVYIKCGCV-----GYEVQ----------DEVTNGTEICGLKENECYLKTRRNFTKTKREDCWAKCPKQCDEISYQVSLSSGNLGNTGIFNRLSRLKSWNKTTEQARDYVRNNMVGILISFQDYSVLVEESLRTVTWTHLMGSIGGSVGLCLGFSLITAFEFLFFIF 483
            ER +    F+   + HG   +   +   RR LW ++     +L     Y  ++++  + TTT++   +  + +++FP +T C  N   QT     F  +   +   S    +++       ++  T  AA+  N   V  +    + LN + +             C F+GK C+ +DF  V+T +G+  CF FN        RK +      G +LL ++      D+ + GF   GI   I S   P KV  FDG    +S  G   + ++++++   + Q +P G      + ++    Y+ + C  +C  Q +  +CGCV     GY ++            V +  E   L    C + T             + CP  C+EI Y  ++S  +      F     LK  +K   Q+R Y+R N+V I I++ D +  + +  + V+ + L+  +GG +GL  G SLIT  E + ++F
Sbjct:   33 ERKKFDHDFAISTSFHGIHNIVQNRSKIRRVLWLVVVLGSVSLVTWQIYIRLLNYFTWPTTTSIEVQY--VEKMEFPAVTFCNLNRF-QTDAVAKFGVIFFLWHIVSKVLHLQEITANSTGSREATDFAASHQNFSIVEFIRNKGFYLNNSTLLD-----------CEFFGKPCSPKDFAHVFTEYGN--CFTFNHGETLQAKRKVSVSG--RGLSLLFNVNQEAFTDNPALGFVDAGIIFVIHS---PKKVPQFDG-LGLLSPVG--MHARVTIRQVKTVHQEYPWGECNPNIK-LQNFSSYSTSGCLKECKAQHIKKQCGCVPFLLPGYGIECDLQKYFSCVSPVLDHIEFKDL----CTVGTHN-----------SSCPVSCEEIEYPATISYSS------FPSQKALKYLSKKLNQSRKYIRENLVKIEINYSDLNYKITQQQKAVSVSELLADLGGQLGLFCGASLITIIEIIEYLF 468

The following BLAST results are available for this feature:

BLAST of TCONS_00024172-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00024172-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ASIC5	2.068e-23	23.86	Acid-sensing ion channel 5 OS=Homo sapiens GN=ASIC...	[more]

You are here

TCONS_00024172-protein (polypeptide) - C. hemisphaerica