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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024121 ID=TCONS_00024121|Name=TCONS_00024121|organism=Clytia hemisphaerica|type=transcript|length=2349bpRun BLAST on NCBI transcript from alignment at sc0000476:151275..165306+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024121 ID=TCONS_00024121|Name=TCONS_00024121|organism=Clytia hemisphaerica|type=transcript|length=14032bp|location=Sequence derived from alignment at sc0000476:151275..165306+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00024121 vs. Swiss-Prot (Human)
Match: TRM44 (Probable tRNA (uracil-O(2)-)-methyltransferase OS=Homo sapiens GN=TRMT44 PE=1 SV=2) HSP 1 Score: 352.058 bits (902), Expect = 1.798e-108 Identity = 196/485 (40.41%), Postives = 270/485 (55.67%), Query Frame = 3
Query: 648 WLHTVLIKKITAWMEAASLSDHGLRKQQTLSQINIESYTQTYNRLKKKYGPYFVENWTESTDAQKFVYEDIALASYLIVLWSKEREERDLLRKQSFIDLGCGNGLLVHILSSEGHPGRGVDLARRKIWNMYGENTKLEVETILPDTTTVTE--DWIIGNHSDELTPWIPVIASRSSFDTRYFVLPCCFHDFYNKFHHKDQKKSHYESYLEHILQIGRECLFEVAQDMLRIPSTKRICQIGTRRNSTYEQYNGVNLRIEKLLTQNSRQSVAM------FNPRSTQNIVKNCTQIDNSIK-DLVIKTVSD----------------LLLFSPEDS-------TVVERTEIDFVI-----------DLEQKTSKGCPWSDWNRGGRIHLNDIAQHFDGEILKEMKCQCGGLQTLLKNNGNIFKVVGGYVSIRDQRXXXXXXXXXXXXXXXQGEERRKTKMCWFHLNHPQGCLFSSDICNYAHQKDELR 1973
WL L+ K+ W SD + TLS I+I Y++ Y LK+KY V+ W E TD +KFVYED+A+A+YL++LW +ER ER L +QSF+DLGCGNGLLVHILSSEGHPGRG+D+ RRKIW+MYG T+LE + I P+ T+ DW+IGNHSDELTPWIPVIA+RSS++ R+FVLPCCF DF ++ + KK+ Y YL+ I ++G C F V +D LRIPSTKR+C +G R TY ++ ++ SR+ + +P + D D + V+ L F P + + R ID V+ L ++S+ WN G + L ++A D E L+ +K +CGGLQTLL+N+ +F+VV G V IRD R K + + + E KT++CWF ++HP GC S+D C +AH ELR
Sbjct: 269 WLGEELLAKLAKWSVENKKSDF----KSTLSLISIMKYSKAYQELKEKYK-EMVKVWPEVTDPEKFVYEDVAIAAYLLILWEEERAERRLTARQSFVDLGCGNGLLVHILSSEGHPGRGIDVRRRKIWDMYGPQTQLEEDAITPNDKTLFPDVDWLIGNHSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTCGFHVDEDCLRIPSTKRVCLVGKSR--TYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPSPRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCAALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRLKRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFFMHHPDGCALSTDCCPFAHGPAELR 746 The following BLAST results are available for this feature:
BLAST of TCONS_00024121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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