TCONS_00024099 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024099
Unique NameTCONS_00024099
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1711

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024099 ID=TCONS_00024099|Name=TCONS_00024099|organism=Clytia hemisphaerica|type=transcript|length=1711bp
CTGACTGACGACACTTTTCGTTTGCATTccaatattttgttttgtgtAAA
ATGAAGAAGCTTGAGATTTTGTGCTTGataattttttgctgtttttttga
GTTGGTTTTTGCGAAAGGAAGTAAAGGAAAACAAAGCACTTTAAGGAAAA
CTGGGCCCAAATCACGAGGTCAGGGAGACCGACACGATGAAGTCGAAGTT
CGTTCGTCCAATCATGCAACAGGAGGTACCCACAATGCCGAAATGCCGGA
AGCCATGATGCCACCATTGGGATATGACCCAACAGAATATGGAAGACAtg
GCGAGACAATGAATGTGAACATGACATTTTGGATAGAATCTGTCATCAGC
ATTGACCTCTCAGCTATGgaaTACACCATCCATGCATATCTCATCCTTGA
ATGGGAGGACGAACGCCTGGCGAACGTACGCAACCATAGTGTGGTCTTGC
GCGACCGCTCCGCAATCTTTTTGCCCGATCCTTACTGTGTCAACTGTAAA
GACCCAAGCTTGAGTGGAAACAGCAATGAATTTCAATTGAGAATTCATCC
CAATGGGAAAATCTATTACAGTCAGTCTGTGACATTATCGCCCACGTGTC
GAATGAGCTTGCGTCACTTCCCGTTCGACTGGCATCGATGCAAATTGGAG
CTGTCAAGTTATGCCCACAACGATTCTTACCTGAAGCTTCACTGGGCACG
CGATCCCAACATGAAAGAGACACAACTTCAACAATTCACAGTAACAGATA
ACGTGCAAAAAGGGACACGTACTGGAATGTATCTCGCAGGAAACTTCACC
ATTATGGAGGTCACGATTGAAATCAAACGTCAGCAAGGATTTTACGTTCT
CCAGGTTTACGTTCCATGTATCATCCTCGTCCTCTTATCCTGGatcatct
tcttcatcaatcCTGATCAGATCGGCGATCGGCTGGCCATCGGGGTGACA
CTCATCCTGACCATGATCTTTTTATTGGGTTATGTTAACGGTTCACTACC
AAAGGTGTCGTACATCAAAGCGATTGACTGGTACATGATTTGTGCTTTAC
TCATGATCTCCATGGCCCTTGTTGAAACAGTCTTCGTCTACTGGCATTGG
ATGAAATTCTCCCAAGAGAATAAAGAGGGTTGTGAGCATTCTGAAGAAGA
CGAGGAAAGCGATATGATAGAAAGCACCAACATCGAAGATGGTCTCATTC
ACAAGAAGAAGAAGTCATCTACGCATGAAGAAACCACCTTCTATCCTCCA
CTCGCAAACACTGAAGAAACCATTCAAGCTGGTTCTCACACTAACAACAC
GAATCATTTCTCAATGACAGTGCGTCGACGCTTGTTCGCAGTCAATGCCT
TCAAACAAAATGGCGACATCAAGAAGCGGTTGTCGGCGAATATTAAGAGA
CCGgacatttctaaaaaattggATCAAGNGGTTGTCGGCGAATATTAAGA
GACCGGATATCTCTAAAAAATTGGATCAAGTCTCAAGAGTACTTTTTCCA
TTGATGTTTGCTTTTTATAACGTCGGATATTTTATTCGGTATATGACAAA
CAAAGGCTTTTTCACTGAAACCATGTAAATAAAACACGAAAACATTGTAG
CTCATATTATTGCACTTAATGTATTTAAATTTGTAACTGGAAGGTTTTAA
ATTCGACCTCCCTAAAATTATTTTCCGTTTATTTACATGTAGCAAATACT
TTCAAAGTTTA
Run BLAST on NCBI

transcript from alignment at sc0000474:190304..206175-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024099 ID=TCONS_00024099|Name=TCONS_00024099|organism=Clytia hemisphaerica|type=transcript|length=15872bp|location=Sequence derived from alignment at sc0000474:190304..206175- (Clytia hemisphaerica)
CTGACTGACGACACTTTTCGTTTGCATTCCAATATTTTGTTTTGTGTAAA
ATGAAGAAGCTTGAGATTTTGTGCTTGATAATTTTTTGCTGTTTTTTTGA
GTTGGTTTTTGCGAAAGGAAGTAAAGGAAAACAAAGGTTGGTTTATTTTT
TTCCAGTAACTTCAATTTTTCGTGCACCCTCAGAGTTTTTGTTACCTGAA
AAAGATTTTGGCAACTTTTCTAAACTTTCTCTGATAAATATAAATGTCCT
TCTCTACAATAATAATCATATTTTACACACTCCTTCACCTATGCAGCACT
TTAAGGAAAACTGGGCCCAAATCACGAGGTCAGGGAGACCGACACGATGA
AGTCGAAGTTCGTTCGTCCAATCATGCAACAGGAGGTACCCACAATGCCG
AGTAAGTACTATGTATCTGCATTATTTACTGTGTCAGTCAAAACCGTACT
GGTGCTGGTTGCTAGGTAAGTCGAACTATCCAGTTTGTTTCACGATGGAA
GAACAAAGAAATCCTGGTGATCACAATGTCGAACAAGTTGTCAATTGCAG
ATTCCTTAACAGAAGAAATTTTGGTTGATGAAGGATATATTTGGCCAAAA
AATCTAAAAATCCACCAAATCTTCTTTCTGTCATAATTTCTATCACTCTA
AATAAACCATTTCAATTTTACATTTAGAATGCCGGAAGCCATGATGCCAC
CATTGGGATATGACCCAACAGAATATGGAAGACATGGTAAAGGCCGGTCT
CCACTTGTGCGCGCTACGATTGTACCTTTTGGCTTCAATCCTTTTTGCTT
GGAAAAAAGAATACGTCATAAAAATGTAGCGAGCGCTTGAAAAAAAAGTT
GAACACATTTCAATTTTTTTCAACTGTTACGTCAGATCGCGTCAATGGAG
TTGCTTCATTTTTTTTTTGACCAATAGCGTGGAAGCTTTGCTCGAAAAAG
TGAGATCGAAGCGCCCGCAAGTGGAGACCGGCCCTAAGATTTAAGAGAAT
AGGATCATACTCAAGATTGGACAAATTATTTAGGCAAAAACACGAAAAAG
ACAAACGTTAGACAGACTCTAGGTTGCTGACATCCACAACAGATTCGTGC
TCCTTATACTGCCTTCGGTTTTTTAGAGGTCTGCGATGAAAACCAGGCAG
ACATTTGAATTTTCGCGAGTTTCACTCCTCCCAATGACAAGGTCTTATAA
AGAAACTATAAGAATCAATGACTTAATCAACCAACCAAGGTCTAGTAATC
AGACCAATCCATTTATCATGGTAAGATCTCAATTTCCTTCTCCTTAGGCG
AGACAATGAATGTGAACATGACATTTTGGATAGAATCTGTCATCAGCATT
GACCTCTCAGCTATGGTAAGTTTTCAAGATTACAATAAAACTCCGTTCAC
ACTAAACGGATAATTCGTACCAAAGTCATAACTTCCATTAGTTTCGCAGA
AGTGGAACCGCGACATTGCAAAAGTTACCATATAAAATGTCCTTTTTCAT
CTGTACCTATATCAAACTGCCTTAAATATAGTACACAAGTACATTTTGAT
ACCCTCGTAAAAATACTCTCCTCAACAGCTGCCAAAGCTTTCATATTTGA
ATAGGAGGGAGTAAGGCGAGACCAATTAAATTTGTTGTTCTACGGGCAGA
TCGTTAGCAAAATATGAGTCGGTCGGTCGGTAAAATAAAAATAAGATTTT
CATTAATCAAGGAAGACTTTAAGTAATATCTTCAAATAATCTTGATCGAA
AATTCATCAAATTTTTCGTGCATAGAATTCATGATTCTAGATTCTTTTCA
ACTTTTTTTTAAGTGTAAATTTTTAAATGACTAGTATTAGAAATTTGTGG
CACAGGAAATTCAATATTATTATTTTTCGTTTGCAGCAAATGCTGGGTCG
GTCGCGCCTGTAGAACAACAAATTAAATTGGTCTCGCCTAAGCTCTATTC
AAAGACAACCAAAGTAAAAACTGAATTGAAAACTTTTTGACGTTTGACCA
ATTTCTCTTTAAAGGAATACACCATCCATGCATATCTCATCCTTGAATGG
GAGGACGAACGCCTGGCGAACGTACGCAACCATAGTGTGGTCTTGCGCGA
CCGCTCCGCAATCTTTTTGCCCGATCCTTACTGTGTCAACTGTAAAGACC
CAAGCTTGAGTGGAAACAGCAATGAATTTCAATTGAGAATTCATCCCAAT
GGGAAAATCTATTACAGTCAGTCGTAAGTGTGAATCTTTTCAAAACAAAG
AAGCTTGGATTAAAAATTAAAAATAGACACTCTTTTATACAGAAAACTCG
GAATAAGTCCCTAGCCTGTAACCTGCCAATAAAGCATTCCCGTGAAACAA
CTCAGGCAAAAAAATAATATTTCGTTGATACAGGCTACAAATTATCAGGC
TCCACCTGGCGAAAGAAGTTTTCTCTCGACCCATTGTGATTTTATTTGAT
TCGTTTTCAGTGTGACATTATCGCCCACGTGTCGAATGAGCTTGCGTCAC
TTCCCGTTCGACTGGCATCGATGCAAATTGGAGCTGTCAAGTTGTAAGTG
TTTTTATACCGGGTGGCCAACAAATAATTATCACTTGAACGTTTCTGTTC
CTAAATAAGGTTAAGAACAACCCTGCATCGTTTTGGAAATAATACTTGTG
TGTTCGGGTGTTCTTTCCGACAAGAGATGTTAGAGGGGCACTCTTTTCAT
GAAAAAGTATGATTCTCAAAGATTATCTTCCGCTCTCCTATTACTTCCAA
ATAACGGAGACTACCATTAGAGTTTCAAAACATTCAAGTTACAAAGTCGA
GCAGAAGGGTTACAATTCACAATGAACAGAGCTTGGCATTTATCTTCAAA
TACAGGCTAGCTATTAATAAGCTCTAAAACATGACATTCATTCTCCTTCA
GATGCCCACAACGATTCTTACCTGAAGCTTCACTGGGCACGCGATCCCAA
CATGAAAGAGACACAACTTCAACAATTCACAGTAACAGATAACGTGCAAA
AAGGGACACGTACTGGAATGTATCTCGCAGGTAAGCTCGCTAGAAATTCC
TTCAAAAATCTAATAAAAATAAATGGTTATTTAGACTATCACTTGTCCGG
TGCTTATCGACGAATCTCAAAAGCATTCACTCGAGGTAAATATCTAGACT
GGAGTCGTTTATAATTTAATTTACAGTAATATATTTCTCAGGTCTATCGA
CCTCTATGAAATAATCATGCTTAACATTTTACAATTTTACAGTTGTAGGC
GCACGGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTAGTGCACAAAGGTTTCTAGACGACTAAAAT
TGTTCCATTCATTACTTTTTGCTTTATTTCTACTATGTATAAATTAGTCG
TCTAGCTTGCTAGACTAGTAAATATCCGAATAACAAATAAAGGGCTAAGA
AAAAGGCTTTCTTAGACCAGGGATTTGTTAAGATTTAAGATTGTGAGATA
AAGGACATTTTATAAGTACGAAGAAGGAGTAAGCGAATAGCTTTCTGAGA
CAAGGGATTATCTCTGACATTGATAAGTATGAAAATCTTTATTATCAAAA
CAGAACCACCTTATTTCTATCCACTGACCTTTATATACCATGGACCAAGT
TTCTCAATCCCAGCCAAGCAAAATCTTTGATCGGAGTTTTTTTTTAAGTG
GTTTCCTAATGGCGGGACTACTCAATAGCCGTGTAAATGCATCGAGAGCG
CTAGGTCTACTTTCCCGCGAAAACTTTTAATGATGTAGCGCCGTTAGACG
CTAATTTTTAACACTGCAATGGCTTCTTTACGGGTGCCAATTCAAAAAAG
AATTCCGATCAAAAATGGCGGATATAGCTTGGTCCCGGGATATATAAAGG
TCAGTATTACTATCCCGATTGTAGGAAACTTCACCATTATGGAGGTCACG
ATTGAAATCAAACGTCAGCAAGGATTTTACGTTCTCCAGGTTTACGTTCC
ATGTATCATCCTCGTCCTCTTATCCTGGATCATCTTCTTCATCAATCCTG
ATCAGATCGGCGATCGGCTGGCCATCGGGGTGACACTCATCCTGACCATG
ATCTTTTTATTGGGTTATGTTAACGGTTCACTACCAAAGGTGTCGTACAT
CAAAGCGATTGACTGGTACATGATTTGTGCTTTACTCATGATCTCCATGG
CCCTTGTTGAAACAGTCTTCGTCTACTGGCATTGGATGAAATTCTCCCAA
GAGAATAAAGAGGTAGGAAGCACCATTTTCACCTAAAAGAAAGTTGACTA
CTTTTACTTGATTTTTAAAACACACCTCACAGACCCATTGAGACTCCTTC
CCACTAGAAAAATTGGTGAAAATATTTTGCCTAGTGGAAAATTATACTCT
TTGTCCCCCTTGAAAATAATCAGATTAACAAATCCTCACTGCTAAATATT
GTGCTATTTTTCGATCCCCCCTGAATTTTCTGGCTCGAAAACAATGGAAT
TAAAATCTCCCGCCATAAAAAACATGGGAATATCAACCCCTATCGAGTTT
TGGTCCGTCATTTTTACCCCCCCCCCCCCCCCTTGGGAAAAACCAAAAAA
AAAAAAAAAAAAATCCTCCCGCCATAAAAAACATGGGAAAAACCCCCCCC
TACGGGTTTTGGCCCCTCTTTTTTCCCCCCCCCCCCCCTAGTTGAGAAAA
ATCAAACAGGAAAAGACAAAGATCAGCTAAAAGTGGCAAAAGTGTAATAA
ATTTCTTTATTTTAGACGGTCGAAGTGATGACTACAAGTGAATGTCGTGC
TTAGACAGCGTCACTTTTTGTTTGGGGTTTTTCTCAATTTGAAATTCTAT
TGGTTCCGTTAAAGAATCATTCGAGAGAAAAACATGATGATGAAATTTCA
ACATCCTCACAGCGTGTGTTATTTCCAAGAAAAAAGGGAAAAAGGGAAAA
TTTAAAACAGTTCAATAGTCGCTTCTTTGGTGACTTTACTTAAGGCAAAT
TATCAAAGGAGGATTTATCATACAAATACAAATATTTCATTGTGAGTCTT
TCGAGGATATTATCCCGGGAAAGTTAGGATTAGAAAGCAAATATCTAAAT
AATGTGTTGATTTTTTAGTGAAAATTATTATTTTCTAAAAGAAACTGTGC
ATCGAAAATTATGTCTGAGAATTCTGGCTCACTGGACAAAGAATTACAAC
CATCCACGAGTTTGACCAACCCCGAAAATGTGTTTTTTTTGTTCCTCGAA
GGTCTAAATAAAATATTTGTCAAAAATCACTGTCTGTCAAAAGCATTTCG
GTGTGTTTAAAAAGGCAAAGCGTGTCGAGATATTATTGGGTCTATTAGGA
ACAAGCTTAAAACTCTAAAAAAATAAAACATCTTAATTGACTTCATCAGG
GATTTAAAAATACAAATGGTTGAAATTGTAAAAAATAATTTTCAAATTTT
TCAGGGTTGTGGGCATTCTGAAGAAGACGAAGAGAGTGATATGATAGAAA
GCACCAACATCGAAGATGGTCTCATTCACAAGAAGAAGAAGTCATCTACG
CATGAAGAAACCACCTTCTATCCTCCACTCGCAAACACTGAAGAAACCAT
TCAAGCTGGTTCTCACACTAACAACACGAATCATTTCTCAATGACAGTGC
GTCGACGCTTGTTCGCAGTCAATGCCTTCAAACAAAATGGCGACATCAAA
AAGCGGTTGTCGGCGAATATTAAGAGACCGGATATCTCTAAAAAATTGGA
TCAAGTCTCAAGAGTACTTTTTCCACTGATGTTTGCTTTTTATAACGTCG
GATATTTTATTCGTTACATGACAAACAAAGGCTTTTTCACTGAAACCATG
TAAACAATTCACGAAAACCTTGTAGCCCATATTATATTATTGCACTTAAT
ATATTTAAATTTATAATTGTAAGGTTTTAAATTCGACCTCCCTAAAAATA
TTTTTATTTTCCGTTTATTTACATGTAGCAAATACTTTCAAAGTTTACCA
AATACAAATTCCTTACTGATTTATACATATGCAACGAGGATTGTTTCAGA
TGGGTACCCGGTTCCGTGAATCCGTCAGTTTTTCTTTGAATTCCGAAATA
CCGACCGATTTTGCTAAATTCCGTTTTTCCGGACTTAGAGAACCAATTTT
TCCTCTCTCATATAGGATCTAATTTCCGAACTTCTGTACAAACTTTCGTC
GAATTTCACCACTCCGTCCGAAAAAGGCCCGATTCCACTTCTCCATTAGC
CATGAAACCTCCATCTAGAACTTCGAAGAAAAAGCAAGGCCTTAAAGCAA
GCCCTTAATGCTTGGTACCGTTGAGAAGCTCTTTCTTTTCTGAATCAGGT
CCCGATTCGTCCTCACTGACGATATCGCCACTGACGGCCTAAAAAACATC
CCCTTCTCACAGACCCACTGGAGAAATTGGCCAAAATATCGTCCCCAGTG
GAAAATTATACTCTAATTTCTGTCCTCGCTGAAAATAATCAGATTAACCA
AACACCACTGCAAAATATGTTTTTTTCCATCCCCATTAAATTTTCCTGTT
CGAAAACAATGAAATTCAAATCCCCGACCATAAAAAAATGGGAACATCGA
TCCCCATCGAGGTTTTGGTCCGTTATTTTTACCCCCACTGGCTGAAAACA
TCCTTCCGTGTCTGTGAGAAGTGGGGTGTAATAAAGACATGCACAAACGG
AATTCTGGGTTAAGTTTGCGTAAGATAAAGCAAATACATGATGTTCTTGG
CTTTAACCCACTGACCTTTATATATCCAGGACCAAGTTTCTCAATCCCGG
CAAAGCAAAATCTTTGATCGGAGTTTTTTGAAAGGTAGTTCCCTAATGGC
GGCACCACTCAATAGCGGTGTAAATGTATCGAGAGCGCTAGGTCTACTTT
CCCTTAAATATTTTTGTTGATGTAGCGGCGTTAGACGTTAATTTTTAACA
TTGCATTGGCTTCTTCTCGAGTACCAATTCAAAAAAAACTCCAATCAAAG
ATGGCGGATAAAGCTTGGCCTAGGGATAAAAAAAGGTCATTGCTTGAACC
CCACCCCAAGATATCTTTCAGAAATTCAAGCGTGCAAGAGGTGAAGTAAG
AAGAAGCTTCTATAAACAGCATCCTTGAGTTACCATAGCTTGTGAGTAAC
AAACTATTTATTTGTCACAAAAGACATGCGTTGTGAAATATCGTAATTAC
TCTGCGGTATGGTGGTTCAGACACGCCAAGATTGTTGAGAAAAGGAACAT
TTCGATTTCTCATGTAGGATTGTCTAATAATTTAGCCCTCTGTTTATCCA
TTTCTCTGGCAACGTAAATGTTTTTCCTGTGACTAATTACAAAGGTTTCA
GGGCCACGGCAGATCCTCTTTATTAACTATGAATATTGTCCGAAATTAAA
TTATTATTATGCGATTGGTGGCAGAAAGTAATTTTTCACCGCAAAGGTTC
CTTGTCCAATTAATTGACCAATTATAAAAACCTTAAAAACTTGATAGAAG
CCACCTAAAAATAACTTTGTAACTTAATGTTAAGGGCGACAAACAAGTAA
TTTAAGCAAGCAACCATTTAAGCGGTTATTGTTGATATCCCGTTAATATG
TTGGAATATAATTTAGTTTGGCGCTGCAACTAGGTAACACACCAAAATAT
TGGTCACCCATATAACTTCCTCAACCTGTGAAAGTCGTCTCATGTGAAAA
ACTACCCGGAAATTGATAATATCCTGTCAACGTTTATCTGATTGGTCAAC
AAGGATGGCGTTCACTATATACGGTGAAATCGCATTTGAACTAAACTAAA
GGATCAACCCGATCAACCATTTTGATTGAGGATTTCTGGTTCATTTCTGA
AAGCTGTACTACCTTTCAGATTATTTCCTTTTGACGTTGTTTCTCTTCTA
TAAATAGACCGAAAGAACGGGTATCAATGTTACAGCAGCGTTCTGATTGG
TTTATCGGGAAAACCCTGTCTTTTTATTGGTTAATTAAAATATTAGAACG
AATCTATCTAATCGGTTTCTAGCTTTCTCTTCCCTCTGCCTTACAAAGTA
TTACTTTAATGATACAAACAGACGCACGAATAAACACTGTGTACCTTATT
AAAAAGTCTAAAACACTCAACACCGCACCATCAATATATTACAACAACCA
GAGGGAAGGTGCCTCATATCAAGACTTAACCACATGCAGTGGGTAGATCA
TCAGCCACACAAAATCATCGCAATACTAAAATACACCACAAGAATAGTTC
CCTCCACGAAACAGACTGATCAACTTCCTCCAAAAGACCTTTTTAGATTT
TGATATTTGGTCATCCTTACCCTTTATGAGCACAAAATAAAAAACCGAAC
CCTTTTTTGCTCAAAAGTTCATTCTTTTAAGGATATGGAAATATTGCGGA
TATTTACATTGAATTTGACTTTGAAAACGTCCATTTCTTAATAATTGCAA
CCCATTTTCAGTCAATTCCGTGTATTCCAGGCTTTATTTACGTTACTAAT
AGACGCGAGAGAATAATTGGATTATCAAAGCAGAGTGGGAGAAAATATTT
ATGTTTTAAGCAATGTTCTTTTTTCGTAAAGACCTTTGATTTATGAAATA
ATTTGAAATCGAATATTGGTAAAAATAAAGCAAAAAAAAAGAAATTCTAT
TTCAAATAGGAAAATGATCTCTACACGATGATTTTTTCGTGAAAAACTTC
AGATCTGCGACCTTTGGACCTAATGACAAAATGATTCTTAAATAAATAAT
TCAGGAGTCGCCCCTAAGCCCCAGGCGATCTAAGAAAATCGGGGGAGAGT
TATGAAGATTCGCACCTTTGTGCAAAGTTTTTATTTTTCAGTATTTCACA
CACTTTCGAAAAACGTGGCAACATACATGGCAGATAGGAGAATTAACAAG
CACTAAACAACAAACAATTTCAGTAAAGGACAAACAAAGTCGTTAAGAAA
AAACATTACAATGACTTCCCAACAAGAAGCAGGCTGAAGAAGGAAGTTAA
CAACCTCTCTCTCTCTCCCTCTCTGTTTGTTCAATATAATGTCTGGTTGG
AAACAAATATTCTGTGAACCAAGAAACTTGTTGTATAATGAGTTCCTTAT
TTACAATATAAACCATGGCTGTTTTCCTAAATTTATGTTAAAATATATTT
AACAATATATTCGTTTTCATGACAATTAAAACATTAGTGCAACTTTATTT
TAAACATCCCGATAAGTTGCTCCTAAGTTTCCAAAACAACTCTTGGTTTT
AGAATGATTAAGTATTTAGCAAAATGGTTTAATTATGAAAGCTAAAAAGG
GTACGAAGGTGCACCACTTGACAGGGTACCTTTATTATCTTGGGTGATAT
TTTTTAGAGATTTTGAAGAAAAAAAAAACAAAAAAGTGTCACGTGACTCT
CTACTTACACCCGATCAGGGTAATTTTCGAAAAAAGCTCTACTTTAAGTT
GCTAGCACTGACCTTTATATATCCCTGAACTAAGCTATATCCGTCACCTT
TAATCGAAGTTTTTTTGAAAGCTGGTACCCACAAAGAAGCCATTGTAGTG
TTTGAAACTTTGCCTAATGACAAACGGTGCTACATCATTAGCATACAAGC
GAAACTAGATCTAGCGCTCTCTCCGCGGGTACCAATTTCAAAAAATCTCC
AATCATAATATTTTGCTTGGGCGGCATTGAGTAACTTGGTCCAGGAATAT
AAAAGGTACTAGTTACAAGAAATATCTTTGTAACGATAAAATTCATTAAT
AAAAGAGAAACTCATTAAGACTGAAACAAAAAATCAGTGCAAGTTGAAAG
CAAAAAGGTTTGACAGTTGACACGGCTGTTGAAAAAATAGCAATTACTCA
TAACTCAAACACTTTCAATTAAATCAAAAAGAATATCTTAAGTGATATTA
AAAAACAGTTTTGAAAATTACTTTTCAAGCAGGGTTGTACCCATTCTTAA
GCCAATATTAATTTGGGTTTTAATTTCAAAGCAATTTTGTTGTTACCACA
AGAATCGCAAGGTTCATTGCTATAAAAATCTCGTTATCTGTCCAAAAGAA
TTCATCAACAGTCAGGTTTTAATTGATCTCATTATTAAAGGCCGGTGTCC
ACTTGCGCGCGCTGCGATCGCAACTTTAGCTTCAATCATTTTTGCTTGGA
GAAAAGATTACGTCATAAAAACGCAGCGCGCGCTTGGAAAAAAAGTTGAA
TGTATTTCAACTTTTTTTTCAAGCGCGCGATCGTTACGTCATATCGCACC
AATGGAGTTGCTTCATTTTTCTTTTAACCAATAGCGTGGAAGCTTTGGTC
GAAGAAGAGCGATCGCAGCGCGCGCAAGTGGAGACCGGCCTTAAAAGCCC
TGGAACCCACAAATTGTTGGCACAATGCCCAAATGCATGGATGGGGATTT
GCAAGCATGGTGTGATTTAGATAGATAAAAATCTCCTCTCAATAATCATA
TGGACTCTTTTGAAAATAAGTCATTAGACGAAAAATTGAACAATGATGGG
AAAATAAAACATTTTTTCCGAAGCGAACTGACAAGAAACGATCTCAAAAA
TTAAAACAATAAAAACCAAAGACTTTTAATAATCGTATTTTTACTGCCGT
GTAAAGCACATGCCGAAATCATATTCCGACCTGTGCCGACCAATCCCGAT
TTTATTCAGCGCGCAATTAACGCAGAGAAAAGTAACCATGACGACAATTC
AAGATCTTGGATTAAGTTCAAAGTTTATAACTTTATTCAGGCCGTTGAAA
ACACAACTCAAAAATGTCATCAAAGATGAGAAGATTTCTTTAGAAAGAAA
CTCATCTCAATTAGTAAACCATACGATTCCGAGGTAATCGTCAGTAAATA
ATCATTAGTAAATCATAGTTTTTTTAGAAAAAGGGAAAATAACTTTTATA
TTTTTGTAAACATTCGAAAACCTCCTGTTTTTCCTTTGTTTAAAAAGAAA
ACATTGCAGTGTAATTTTCTTTGTAACGTAAAATTTCTTTGTTCTTTTTT
ATATTGAAGAAAAAAAATGTCTTTGTTTTTTATTATATAGCAAAAAAAAG
TCTCTGACACAGGACTTGGGAGAGAAAAGAATAAGGGGACAAAAGTGTCC
CCCCGCCGAAGAGTGCAAAAAGTGGTAATAGTGCAATTAACGATTAATCG
CACTCCTCTAAACCAATCAGATTCGAGTAATTTTGCACGGCTGACGATTA
CACTTGGGAATTCGTCAGTAGTAAACATGTATACTGATACAATATGCTAG
ACATTAATTTGGTAATATTTTGCTCTTCATCTTTGATTCTTTACAGTGAT
TAGATTGACACATGCGCGATAAAATTTCTTTAAGTGGTCGTCAGAGGTTG
ATATGTTCTTTGAAAACTCAACCTCTTATACTCAGGGTATATTTCACTGA
TACAGGGTTTCGTTGTGTTATGTTGAGGGGATGAAAACTTCACAGCACGC
ATGTTTTGAAAATGTAAACATTTTCTTTTGTTTTTGAAAAATCTAACACC
AAGGTTGAATTTCTGGACAAATAAAATCTCGGCCATGACATAATTTAATA
GGATTAATTTTCGCGGAGATTAAATTTCGCACTTGACCTCATCTCAAATT
TCTATTGGGACTTATGTTCGCGGATGACAGCCAACCATTAATCTCCGCGA
AAATTAATCACATTAAAATAGTTGTAAAACTTTATTCCTCAGGTAAAAAC
AAAACAGAAGAGTCAGGTCAGTCTAGTCGGGAGTTGTGCTTTAAAATGTT
TGAAATGTTCAGAAGATATACACGTCAATCACGTTCCGGACATTAAGAAT
CTAGACCGAAGGAAAATAAGGAAGTGTAACAAGTATCAAAGGTACTTTCT
TAGTGGAAGGAACCATCAAGCTATTTCGAGTGTTTTTCTGTTATAGCGTG
TTTGTCGACAAGGGGAAGGGAAGGGTTAAGATTAATGTGTTTTCATTTAG
TTTGATAAAAGAGAAATTAGTGGTTATGAAATTTGATGAAATCGAAATTA
AAATTCAAAAAACTTAATCAAAGGTTTAAACTTTAAAGAACATTTTCAGA
AATCAAGGACTTTTGCAGTCTTAGAACATTCTAAAACAATATTCCCGAAT
AATATTCCGTATCTGAGAGAGAATACCGAGTTTATGTATCGGAGGATATC
GAGCGCGACGGTAAGTGAAATGATACAAAATAAAGTCGATAGTTCATGTA
CGGCTCTATATCGCCTAAATCATATTAGGTGTTTTGTCCTCCGAAGGCTT
GAAATGACTTAATCAATCACATTTCTAGATGATGTCAATAACTATTCCAA
AAAATTTATCTGATTATTTGGCATGTTTTTCCTTGTAGTTCTAAGACAAC
AAAAATATTTTTAGTGCTGTTTTTGGCAACACAATTATTATTCACGTAAC
GTTTTGTTGATAAAACCATATTTGACACACCCCCATTATACATGATTTGA
CAGACAATTTTATACCGATTGTATTTTAATGAGTTCAATTCTAATTTGTG
ACAAAAACCGGCAACAAAAATCGAAACGTGCAATCAGATGCAATCAAGAT
GCATTCTCTAAACGTCACATTACAGCATCTTATAATGGAGAGCACAAGGC
GGGGGAGAGCTCTTTCCTTCCTTTTATGTGAGTAATAAACCCTCTAACAC
TCTCCCACATAGAGAATAGTGCAGAAAGCTGCTCTACTTTGGCTAATTTT
CCACCTGTCAAAAAGGGCAATTTATGATTTCTTTAACAAAAATCCTTTTT
GATTTCAAAAACACAAACAGGACGAACCAATCAGGCTTACTTCAAACAAT
CACCGCTATTTATTTTTCAGAAATTCATAGGAAGATATTTTGAAGAGGTC
AGTCATGTCTGAGTGATAACGTACTTAAGTGCATAGAGCATACACCTTTT
CGACCGTAGTCGCGCGGTCAGGCGCGTTCCACTTAATCATTTAAGCATCC
CCCTAAACTCGATCCAATCTTTTTGACACATTTCTCTATTGTCTATAGGT
GCGAAGAAAGGACTTGGACGGTTTTAGTGAGATAAAGCGGACACAAAATG
CCCGCGCGGCAATTGGCAGCTACAGTCGAAAAGGTGTCTTAAGCTGCATT
TTTCCAAATTTATTTCCAAATATGGTCGAAACAGCTGTCGAAAAAGATGA
TGCTTCTCTGTTTATTACTCGTAATTTGAAAGAAAGATGTGCAAGCGCTA
TCAGAGCGATCCAGGAAAAGAAGTTATTATTCTCAATGAACCTCCTTCCA
ATACATAACTATAAAAAACTTCCTTAATTACGACTTAAACTACAATCGTC
CACAAAATATTTGAGACAAAGGGGAGTTCCCGGTGTAATTTTGAATACCA
CAATTGATTTTTAAGCGCCTTAAACTACAGTTGGAAAGTAGAGTTTTAAC
TCTGAGTTTTAACATGAGACTTAAGACATGATTTAAAAGCTCAAATTTGT
TCGAATAAGGCTTGAGTTATAGCTTAGAAGCCACCAAACCCCTCAAAAAT
CGAAATATTCAATGAAAGAAAGTGGAAGTGCTANAGCTTAGAAGCCACCA
AACCCCTCTAAAATCGAAATATTCAATGAAAGAAAGTGGAAGTGCTGAAA
TAGCAATTCTGGCCCGAACTTTGAATTCTGAAAAACGTTAAAATACACTA
AAATCTCAATATATTTCGACGATGATTGTAGATATGAGCCCTCCGAATGC
ATTCGAGATGGGACCTACCCACGAAGGAGTAAGAGTCACGGCGCTGACAG
ACACTGCGACTTGATAGACGCAAGCTGACAAGGGGGGGGTACTAGGTTTG
TTAATTATGTTCCAAAAGAAACTGCATCAAAAATTATGTCTGAGAATTCT
GACTCACTGGACAAAGAATTTCAACCACCCAGGAGTTTGACCAACCCCGA
AAATGTATTTCCTCGAAGGTCTAAATAAACTAAACCCCCGGACAATTCAT
CATCACCCCGGACAATACATCATCACACTCGTGCGCAAACTTTTTCTGGA
ACAGCCATAAATCATGGCCTGCCAAAAGAATTTCGGTGTGTTTAAAAAAG
CAAAGCGTGTCGAGATATTATTGGGTCTATTAGGAAAAAGCTTAAAACTC
AAAAGAAATAGAACATCTTTGACTTGATCAGAAATTCATGTCAATACAAA
TGGTTATAATTGTAAAAAATAATTTTCCAATTTCTCAGGGTTGTGAGCAT
TCTGAAGAAGACGAGGAAAGCGATATGATAGAAAGCACCAACATCGAAGA
TGGTCTCATTCACAAGAAGAAGAAGTCATCTACGCATGAAGAAACCACCT
TCTATCCTCCACTCGCAAACACTGAAGAAACCATTCAAGCTGGTTCTCAC
ACTAACAACACGAATCATTTCTCAATGACAGTGCGTCGACGCTTGTTCGC
AGTCAATGCCTTCAAACAAAATGGCGACATCAAGAAGCGGTTGTCGGCGA
ATATTAAGAGACCGGACATTTCTAAAAAATTGGATCAAGNGGTTGTCGGC
GAATATTAAGAGACCGGATATCTCTAAAAAATTGGATCAAGTCTCAAGAG
TACTTTTTCCATTGATGTTTGCTTTTTATAACGTCGGATATTTTATTCGG
TATATGACAAACAAAGGCTTTTTCACTGAAACCATGTAAATAAAACACGA
AAACATTGTAGCTCATATTATTGCACTTAATGTATTTAAATTTGTAACTG
GAAGGTTTTAAATTCGACCTCCCTAAAATTATTTTCCGTTTATTTACATG
TAGCAAATACTTTCAAAGTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013532XLOC_013532Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024099-exon-sc0000474-1575043694:206040..206175TCONS_00024099-exon-sc0000474-1575043694:206040..206175Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1575043694:205775..205879TCONS_00024099-exon-sc0000474-1575043694:205775..205879Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1575043694:205440..205498TCONS_00024099-exon-sc0000474-1575043694:205440..205498Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1575043694:204811..204878TCONS_00024099-exon-sc0000474-1575043694:204811..204878Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1575043694:203953..204161TCONS_00024099-exon-sc0000474-1575043694:203953..204161Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1575043694:203633..203715TCONS_00024099-exon-sc0000474-1575043694:203633..203715Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1575043694:203146..203274TCONS_00024099-exon-sc0000474-1575043694:203146..203274Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1575043694:200814..201151TCONS_00024099-exon-sc0000474-1575043694:200814..201151Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1575043694:190304..190887TCONS_00024099-exon-sc0000474-1575043694:190304..190887Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1510915933:206040..206175TCONS_00024099-exon-sc0000474-1510915933:206040..206175Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1510915933:205775..205879TCONS_00024099-exon-sc0000474-1510915933:205775..205879Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1510915933:205440..205498TCONS_00024099-exon-sc0000474-1510915933:205440..205498Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1510915933:204811..204878TCONS_00024099-exon-sc0000474-1510915933:204811..204878Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1510915933:203953..204161TCONS_00024099-exon-sc0000474-1510915933:203953..204161Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1510915933:203633..203715TCONS_00024099-exon-sc0000474-1510915933:203633..203715Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1510915933:203146..203274TCONS_00024099-exon-sc0000474-1510915933:203146..203274Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1510915933:200814..201151TCONS_00024099-exon-sc0000474-1510915933:200814..201151Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1510915933:190304..190887TCONS_00024099-exon-sc0000474-1510915933:190304..190887Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1491911889:206040..206175TCONS_00024099-exon-sc0000474-1491911889:206040..206175Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1491911889:205775..205879TCONS_00024099-exon-sc0000474-1491911889:205775..205879Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1491911889:205440..205498TCONS_00024099-exon-sc0000474-1491911889:205440..205498Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1491911889:204811..204878TCONS_00024099-exon-sc0000474-1491911889:204811..204878Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1491911889:203953..204161TCONS_00024099-exon-sc0000474-1491911889:203953..204161Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1491911889:203633..203715TCONS_00024099-exon-sc0000474-1491911889:203633..203715Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1491911889:203146..203274TCONS_00024099-exon-sc0000474-1491911889:203146..203274Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1491911889:200814..201151TCONS_00024099-exon-sc0000474-1491911889:200814..201151Clytia hemisphaericaexon
TCONS_00024099-exon-sc0000474-1491911889:190304..190887TCONS_00024099-exon-sc0000474-1491911889:190304..190887Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000474supercontigsc0000474:190304..206175 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.162894	0	0.198404	0.183974	0	0.442166	0	0.293308	0.145757	0.459848	4.4163	4.0799	0.130708	0	3.02033	1.10235	8.35099	11.6744	9.32739	9.0149	0.25968	0.618171	1.84429	1.23681	0	0	0.0524335	0
Blast
[Close]
BLAST of TCONS_00024099 vs. Swiss-Prot (Human)
Match: GLRA2 (Glycine receptor subunit alpha-2 OS=Homo sapiens GN=GLRA2 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.275e-43
Identity = 93/267 (34.83%), Postives = 150/267 (56.18%), Query Frame = 3 
Query:  300 GETMNVNMTFWIESVISIDLSAMEYTIHAYLILEWEDERLA--NVRNHSVVLRDR--SAIFLPDPYCVNCKDPSLSGNSNEFQL-RIHPNGKIYYSQSVTLSPTCRMSLRHFPFDWHRCKLELSSYAHNDSYLKLHWARDPNMKETQ---LQQFTVTDNVQKGTRTGMYLAGNFTIMEVTIEIKRQQGFYVLQVYVPCIILVLLSWIIFFINPDQIGDRLAIGVTLILTMIFLLGYVNGSLPKVSYIKAIDWYMICALLMISMALVE 1076
            G  +NV    +I S  S+  + M+Y ++ +L  +W D RLA     + S+ L      +I+ PD +  N K  +    + + +L RI  NGK+ YS  +TL+ +C M L++FP D   C ++L S+ +  + L   W  D  ++  +   L QF + +  + G  T  Y  G FT +EV   ++RQ G+Y++Q+Y+P +++V+LSW+ F+IN D    R+A+G+T +LTM         SLPKVSY+KAID +M   LL +  AL+E
Sbjct:   68 GPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLE 334
The following BLAST results are available for this feature:
BLAST of TCONS_00024099 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GLRA25.275e-4334.83Glycine receptor subunit alpha-2 OS=Homo sapiens G... [more]
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