TCONS_00024019 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024019
Unique NameTCONS_00024019
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1225

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024019 ID=TCONS_00024019|Name=TCONS_00024019|organism=Clytia hemisphaerica|type=transcript|length=1225bp
TGAGATAATAGAATGTAATAAGATAACATGATAatagtaaagataatata
tgtcgtcaaagagtaaACTTAAATGAAGAGCTATCCAATTGAGCACGTAT
TAtcgatttgttttgattgttgtCTTCATTGTTATCGGATCGTTGGAAAT
GGTGCGCCTTTATCTTGGATACTCTGGAAACCTACAAGAAAAGGTGCCAG
AGCTGGCTGGTTTCTGGTTGGTAACGTTCATCTTCCAACTTCCATTGATT
TGTTTCCTTCTATTCAACGAGTACACATACGTTTTACCGTTGGAAAGAGC
AGTCCATATTATCATGTTATGTTTCTTATTATACGAAATCATTCAAGGTT
ATAGATCGATAAAACAAATGACTGATGCCCAAGTTGAGAAATTTCATTTA
CAGAGACTGAATGAAGACTTAGAAATGGAAAGCTTGGAAACGAACACTAG
AGCTTTTGATGGAGTGAGAGAATCGAAAAAAGTGTCTTGAAAAAGTTGCT
TTTTTGAATGGGTTGGATTTTTGATTGGCCTAGAATCAAACACACTAGAG
CTGATCAAAAAAAGGACTgagataatgtttttgaatttattgAGCATTTA
AAGCAATCGAAGCTTTTTTCAATGGAGTCAGAGAGAATAATCAATTGTTT
GAAGTTAAGAAATTTGGATTCAAAACCTTGTGAACTTGAAAATCGAAGAT
TTTCAACTAACTGTTGTAAAGGGTGCTGGTGTAATATAAAATTTAACTTA
ATCAAATGGTActtttagggtactaactgctatGGGGGTGGTGTGCTATA
AATTTCAGGTCAATAAATTGGAACCTTTAGGGTACTAAGTGTAAAAAAGG
CTTGTCTTATCCTTATCAATAAGCCTTTTTCAATGTAGGAGTTTTACTTG
TTTAGAAAATTTGGCCTGAAATGCTTTAGTCTATAGAAAGTTGATCGGAA
TTACCTGGGCAAAGATATAATATTAATGCAATGACTAGTTTGCaactgaa
aaaaattccaactcAAGATAATTATGGGAGCTGGATTATAtatagcctgt
tagacgaaaaccgcttttttatcgcgatttaaaataaagaaaaaagcggt
tttataaaacaaagaaaaaatttggtttgtgggaaggtatTGGCTAGATT
ATATATGACACAAACACTTGTGCTCGTTAATCAAGCCGATCCGAtgcatt
gtttttaaaaaatgtattatatctt
Run BLAST on NCBI

protein sequence of TCONS_00024019-protein

>TCONS_00024019-protein ID=TCONS_00024019-protein|Name=TCONS_00024019-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MVRLYLGYSGNLQEKVPELAGFWLVTFIFQLPLICFLLFNEYTYVLPLER
AVHIIMLCFLLYEIIQGYRSIKQMTDAQVEKFHLQRLNEDLEMESLETNT
RAFDGVRESKKVS
Run BLAST on NCBI

transcript from alignment at sc0000470:238683..241801-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024019 ID=TCONS_00024019|Name=TCONS_00024019|organism=Clytia hemisphaerica|type=transcript|length=3119bp|location=Sequence derived from alignment at sc0000470:238683..241801- (Clytia hemisphaerica)
TGAGATAATAGAATGTAATAAGATAACATGATAATAGTAAAGATAATATA
TGTCGTCAAAGAGTAAACTTAAATGAAGAGCTATCCAATTGAGCACGTAT
TATCGATTTGTTTTGATTGTTGTCTTCATTGTTATCGGATCGTTGGAAAT
GGTGCGCCTTTATCTTGGATACTCTGGAAACCTACAAGAAAAGGTTTGAC
ATTAACTATATTTAATTCTTCTATTTCTTTAATTTCTTGGCCTTATTTTG
CCGTTGACAAATCAAAAGGTCCAATCTCAAAATTATTGCCTGAGAAAACT
AAGAATTTTTCTGTTTGTCTGAACATAAATTTTGAGATTGACCCAGTTTC
ATGTAGATGGGACCCTCCTAACTATGCAAAATGGGCCAATCTCAAATTTA
AGGCTAACTAGACAGAAAAAAATCTTAGCTTTCTCAGAAATTAATTTTAT
GATTGGCCCTTGTCAACGGCGATTTGTTAGAACAACTTAGTTTTACCAAA
GAAATTAATTTTTCAACTCGGAGCTCCATCAAAATCGCTGCAACAGCCAA
AAACCGGATAGTGAGAGCCACTTTGTTCCGAAAAGATCCTTCGTGTGCAC
AGAGTTGTTAAAAGCAAACTAACTTTTTAAATGGTCAATTAGGTCCATAA
AATCACAAAAATGAGTGGTGAGAAAAATTTTGACCATTTTACTGGTCCCC
ATTGTGACGCCATCACTTTTGCTGGGGCTTGAAAATGAACGTGAAAATTA
GAAGAATTATCGTATATGGCTCAAATGAGAGATATTTATCCAAGGATTTC
AAAAAATATCACAACATATACCTGAAAATTAATATTTGAGAAGCTATAAA
GGAAAATAGTTTATCGATGACGTCATCGATAGTAAAAAAATCATCATTCA
TTAAATTTGCCTGCGAAAGGTTTGCTTCGGGCACGCCCAGGAATCTTTAA
AAAGCTTGAGAGTCAAGTCAAACGCATTTCACAGAATAATTTCCTATCAA
GTGAAATTCAAAGTTTTCCGTAGTAACATTTTTTGTTCCCAAGCCAGTCC
TTTTTCAAATAAAACAAAAATTATGGGATTTTGATGACTTTTTAATTGCC
GATGACCTCATCGATGACGTCATTTTCGAGGTATTTTCCTTTTTAGCTTC
TCAAATATTGATTTTCAGGTATATTTTAATAGCCGAAATAATGGGAACTC
TATGGACTCAGGGTCAAGGCTACAAAAGGGTAGTAAATGATTTTTGCATG
GAGAGAACGTAAAAAAAAAGAAATTAGGTTAAGGAAAATAATTTTTGGAA
TCCTTGGATAAATCTTTCATTTGAGCCATATCTGAGCTTTTAATTTTTAT
TTTCACTTTCAAGTCCCAGCAAAAGTGATGACATCACATGGGGACCAGCA
AAATGGCCAAAATTTTCTCACCACTCGTTTTTGTGATCTTATGGACCTAA
TGGACCATTTGAAAAAGCTAGTTTGTTTTTAACAAGTCTGTGCATACGAA
GAACATTGTAGCTCTCACTAGGAGTAAAACAAGTTTCTTTAATTTTTTCG
ATTACACTCGACAGATTTTCATGATCTTTTGCAGGATGAACCAAAATAGT
AATTTTCAAGATGTAATTGTAGCCAAATTCTCAAGAAAAAAAATTTACGG
TCGCAAGATTTGGAAATGTCCCGAGAAAAAAAAGGGTTTTCAGGATTTTC
TCATTAGTTTTTTTCTGACGATTTGTTTATTTTGAATTTAAAGTTTTCTG
TTGATCAGCCGGGTAGGCCCATAAAAGTACCTTAAGAGAAGAAATCTTGG
CGCCCATTCGCCAATTTTGGTGCAATATGATGGAATTTATTCTGGTGATT
TAATAAAATTTCTATATTTGGCGGTAAGAAATGTTGGCGAATTTTTGAGG
CAATTAGCCAAATTCGCCGAAATTTCTTCTCTTAAGGTATCACTTGTTTT
TCTAGGCTTTCTCTTTCTTCTCGTTTAAGGTGCCAGAGCTGGCTGGTTTC
TGGTTGGTAACGTTCATCTTCCAACTTCCATTGATTTGTTTCCTTCTATT
CAACGAGTACACATACGTTTTACCGTTGGAAAGAGCAGTCCATATTATCA
TGTTATGTTTCTTATTATACGAAATCATTCAAGGTTATAGATCGATAAAA
CAAATGACTGATGCCCAAGTTGAGAAATTTCATTTACAGAGACTGAATGA
AGACTTAGAAATGGAAAGCTTGGAAACGAACACTAGAGCTTTTGATGGAG
TGAGAGAATCGAAAAAAGTGTCTTGAAAAAGTTGCTTTTTTGAATGGGTT
GGATTTTTGATTGGCCTAGAATCAAACACACTAGAGCTGATCAAAAAAAG
GACTGAGATAATGTTTTTGAATTTATTGAGCATTTAAAGCAATCGAAGCT
TTTTTCAATGGAGTCAGAGAGAATAATCAATTGTTTGAAGTTAAGAAATT
TGGATTCAAAACCTTGTGAACTTGAAAATCGAAGATAGATTGAAATTTTT
TATTCAAGAAACTTGAAATCAATCGGATGATAAGCAGGGGGGTCATGCAG
TTGGCACCAGACATCGTGACGATTAGCACCGTGGTGGGTCACATTTTCAA
CTAACTGTTGTAAAGGGTGCTGGTGTAATATAAAATTTAACTTAATCAAA
TGGTACTTTTAGGGTACTAACTGCTATGGGGGTGGTGTGCTATAAATTTC
AGGTCAATAAATTGGAACCTTTAGGGTACTAAGTGTAAAAAAGGCTTGTC
TTATCCTTATCAATAAGCCTTTTTCAATGTAGGAGTTTTACTTGTTTAGA
AAATTTGGCCTGAAATGCTTTAGTCTATAGAAAGTTGATCGGAATTACCT
GGGCAAAGATATAATATTAATGCAATGACTAGTTTGCAACTGAAAAAAAT
TCCAACTCAAGATAATTATGGGAGCTGGATTATATATAGCCTGTTAGACG
AAAACCGCTTTTTTATCGCGATTTAAAATAAAGAAAAAAGCGGTTTTATA
AAACAAAGAAAAAATTTGGTTTGTGGGAAGGTATTGGCTAGATTATATAT
GACACAAACACTTGTGCTCGTTAATCAAGCCGATCCGATGCATTGTTTTT
AAAAAATGTATTATATCTT

Coding sequence (CDS) from alignment at sc0000470:238683..241801-

>TCONS_00024019 ID=TCONS_00024019|Name=TCONS_00024019|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0000470:238683..241801- (Clytia hemisphaerica)
GTGCCAGAGCTGGCTGGTTTCTGGTTGGTAACGTTCATCTTCCAACTTCC
ATTGATTTGTTTCCTTCTATTCAACGAGTACACATACGTTTTACCGTTGG
AAAGAGCAGTCCATATTATCATGTTATGTTTCTTATTATACGAAATCATT
CAAGGTTATAGATCGATAAAACAAATGACTGATGCCCAAGTTGAGAAATT
TCATTTACAGAGACTGAATGAAGACTTAGAAATGGAAAGCTTGGAAACGA
ACACTAGAGCTTTTGATGGAGTGAGAGAATCGAAAAAAGTGTCTTGAATG
GTGCGCCTTTATCTTGGATACTCTGGAAACCTACAAGAAAAGGTGCCAGA
GCTGGCTGGTTTCTGGTTGGTAACGTTCATCTTCCAACTTCCATTGATTT
GTTTCCTTCTATTCAACGAGTACACATACGTTTTACCGTTGGAAAGAGCA
GTCCATATTATCATGTTATGTTTCTTATTATACGAAATCATTCAAGGTTA
TAGATCGATAAAACAAATGACTGATGCCCAAGTTGAGAAATTTCATTTAC
AGAGACTGAATGAAGACTTAGAAATGGAAAGCTTGGAAACGAACACTAGA
GCTTTTGATGGAGTGAGAGAATCGAAAAAAGTGTCTTGAATGGTGCGCCT
TTATCTTGGATACTCTGGAAACCTACAAGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013495XLOC_013495Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024019-proteinTCONS_00024019-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024019-exon-sc0000470-1575043694:241609..241801TCONS_00024019-exon-sc0000470-1575043694:241609..241801Clytia hemisphaericaexon
TCONS_00024019-exon-sc0000470-1575043694:239318..239822TCONS_00024019-exon-sc0000470-1575043694:239318..239822Clytia hemisphaericaexon
TCONS_00024019-exon-sc0000470-1575043694:238683..239209TCONS_00024019-exon-sc0000470-1575043694:238683..239209Clytia hemisphaericaexon
TCONS_00024019-exon-sc0000470-1510915933:241609..241801TCONS_00024019-exon-sc0000470-1510915933:241609..241801Clytia hemisphaericaexon
TCONS_00024019-exon-sc0000470-1510915933:239318..239822TCONS_00024019-exon-sc0000470-1510915933:239318..239822Clytia hemisphaericaexon
TCONS_00024019-exon-sc0000470-1510915933:238683..239209TCONS_00024019-exon-sc0000470-1510915933:238683..239209Clytia hemisphaericaexon
TCONS_00024019-exon-sc0000470-1491911889:241609..241801TCONS_00024019-exon-sc0000470-1491911889:241609..241801Clytia hemisphaericaexon
TCONS_00024019-exon-sc0000470-1491911889:239318..239822TCONS_00024019-exon-sc0000470-1491911889:239318..239822Clytia hemisphaericaexon
TCONS_00024019-exon-sc0000470-1491911889:238683..239209TCONS_00024019-exon-sc0000470-1491911889:238683..239209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000470supercontigsc0000470:238683..241801 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.57136	1.78302	1.508	1.78885	10.5011	6.06545	7.27282	6.57134	3.97246	3.82238	3.05961	2.89748	2.28878	1.95355	2.48239	2.48961	4.03689	3.25104	1.75647	1.00992	3.74556	4.18159	2.72255	3.35829	4.59669	5.8457	0.957619	0.668938	1.52679	2.02318
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019184Uncharacterised_TM-17
Blast
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BLAST of TCONS_00024019 vs. Swiss-Prot (Human)
Match: TMM17 (Transmembrane protein 17 OS=Homo sapiens GN=TMEM17 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.024e-20
Identity = 56/108 (51.85%), Postives = 79/108 (73.15%), Query Frame = 2 
Query:   89 LSTYYRFVLIVVFIVIGSLEMVRLYLGYSGNLQEKVPELAGFWLVTFIFQLPLICFLLFNEYTYVLPLERAVHIIMLCFLLYEIIQGYRSIKQMTDAQVEKFHLQRLN 412
            L  YY+F++I V I+I  +E +RLYLGY GNLQEKVPELAGFWL++ + QLPLI FLLFNE    LPLE+A+HII   FL ++++  + ++++M +    +FHLQ  +
Sbjct:   72 LPDYYKFIVITVIILITLIEAIRLYLGYVGNLQEKVPELAGFWLLSLLLQLPLILFLLFNEGLTNLPLEKAIHIIFTLFLAFQVVAAFLTLRKMVNQLAVRFHLQDFD 179
The following BLAST results are available for this feature:
BLAST of TCONS_00024019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TMM174.024e-2051.85Transmembrane protein 17 OS=Homo sapiens GN=TMEM17... [more]
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