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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023982 ID=TCONS_00023982|Name=TCONS_00023982|organism=Clytia hemisphaerica|type=transcript|length=1479bpRun BLAST on NCBI protein sequence of TCONS_00023982-protein >TCONS_00023982-protein ID=TCONS_00023982-protein|Name=TCONS_00023982-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp EKKLRENNTESAEGSQQKGAEAKPKSKIDYARNFPLSEEKGNAAFVKMYSRun BLAST on NCBI transcript from alignment at sc0000468:211546..220060- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023982 ID=TCONS_00023982|Name=TCONS_00023982|organism=Clytia hemisphaerica|type=transcript|length=8515bp|location=Sequence derived from alignment at sc0000468:211546..220060- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000468:211546..220060- >TCONS_00023982 ID=TCONS_00023982|Name=TCONS_00023982|organism=Clytia hemisphaerica|type=CDS|length=16341bp|location=Sequence derived from alignment at sc0000468:211546..220060- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00023982 vs. Swiss-Prot (Human)
Match: MCMBP (Mini-chromosome maintenance complex-binding protein OS=Homo sapiens GN=MCMBP PE=1 SV=2) HSP 1 Score: 327.02 bits (837), Expect = 1.523e-103 Identity = 177/401 (44.14%), Postives = 247/401 (61.60%), Query Frame = 3
Query: 99 NFPLSEEKGNAAFVKMYSKTTSLKLNDVAEFICILSVDPHFA--------QSSMQEEMETNEVTWHEFNMEEDRAHCPPPSLVPRLHCLYYNKLEELNP---NVRNNHTDYECA-----SKELTSIRADLIQTLKGLLGGDGIAAEYLLLHLISSVYGRVGAMCVGKFALNLFKLP-NSGFCERLYQFIEKIVPKSHYLPMSLNNLNNKQFIPSKDFQANRLTSGVLQLSSGTNLILDETQMEPGKLDTDGVKNLTALGNLIQWQKLEYDFTFNRLDIETNVNVLVLSEGKSLLKCDCQ-------LPINFEDTTKQ-TNATSEKLLQKFRYYLSNVRQMKYELTEEVQKALEDDFVEMRKEDSKAMNADAFYVLLTTARYLAISHGQSTLSAALWTRVKE 1226
NFPL EKG A VK+Y K+ND+ E ILSVDP + S++ + ME + EE R H PP SLVPR+H + KL+ +NP N C EL+ +RA+L+ L L GD +AAEYL+LHLIS+VY R + +GKF +NL P NS F E LY+ I+ +VP S L M++ N+N+ +FIP KD+ ANRL SG+LQL S T+L++DET +E G+LDT GV N+TAL NLI WQK++YDF++++++ N+NV + SEG+SLL DCQ +P N E+ +A +L KFR YL+ +R ++Y +++E+ KA+EDDFVEMRK D +++ AD + LL AR L++S GQ+TLS W R K+
Sbjct: 228 NFPLPGEKGPACLVKVYEDWDCFKVNDILELYGILSVDPVLSILNNDERDASALLDPMECTDTA------EEQRVHSPPASLVPRIHVILAQKLQHINPLLPACLNKEESKTCKFVSSFMSELSPVRAELLGFLTHALLGDSLAAEYLILHLISTVYTRRDVLPLGKFTVNLSGCPRNSTFTEHLYRIIQHLVPASFRLQMTIENMNHLKFIPHKDYTANRLVSGLLQLPSNTSLVIDETLLEQGQLDTPGVHNVTALSNLITWQKVDYDFSYHQMEFPCNINVFITSEGRSLLPADCQIHLQPQLIPPNMEEYMNSLLSAVLPSVLNKFRIYLTLLRFLEYSISDEITKAVEDDFVEMRKNDPQSITADDLHQLLVVARCLSLSAGQTTLSRERWLRAKQ 622 The following BLAST results are available for this feature:
BLAST of TCONS_00023982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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