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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023884 ID=TCONS_00023884|Name=TCONS_00023884|organism=Clytia hemisphaerica|type=transcript|length=550bp
ATTCTTTCAAATGATATCTAACCTCGACTGCAATTTTTATGATCAAGTTT
CAAAACTTGCGTCAAAAACGTGCCTGAATAATGTTCAAAATATCCAAACA
AACTCGATAACAGAATGCGTGTTGCATTGTGGGTTAAATCAATGCATGGA
ATCAGTACGAGATCAAAATGGTAGATGTTATTGTACGAACGAGGAGCATT
GCATATCGAATGAAGAAGAAGATTCTGAGTTAGTCTCATGGATAAAGGCA
CCATTTGAATTACTAACAAACGAGCCGATATGCTATTCCGGAAGGGACAA
CGACTTTGCATCCTTTATCATCTCACGTGAGGGCAGAGTAAAGGCGTTCA
AGCTGGTTCACGTTTCAGGGGCAATCTATTGTTCTTCTCCAGCAATCAAT
AAAAAACCAAGCACGTGGGGCTGCAACCATTGGGCGTTTCCCGAAAACCA
TTTCCTAACAATCATCTCAAATGCTAATAACAAAATTATTATACAGAAAA
CACACGATTCGACTCAGGATAAATATGGGAAAGAGTTTTTGTTAACGGCA Run BLAST on NCBI protein sequence of TCONS_00023884-protein >TCONS_00023884-protein ID=TCONS_00023884-protein|Name=TCONS_00023884-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
FFQMISNLDCNFYDQVSKLASKTCLNNVQNIQTNSITECVLHCGLNQCME
SVRDQNGRCYCTNEEHCISNEEEDSELVSWIKAPFELLTNEPICYSGRDN
DFASFIISREGRVKAFKLVHVSGAIYCSSPAINKKPSTWGCNHWAFPENH
FLTIISNANNKIIIQKTHDSTQDKYGKEFLLTA Run BLAST on NCBI transcript from alignment at sc0000464:146728..147985- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023884 ID=TCONS_00023884|Name=TCONS_00023884|organism=Clytia hemisphaerica|type=transcript|length=1258bp|location=Sequence derived from alignment at sc0000464:146728..147985- (Clytia hemisphaerica)
ATTCTTTCAAATGATATCTAACCTCGACTGCAATTTTTATGATCAAGTTT
CAAAACTTGCGTCAAAAACGTGCCTGAATAATGTTCAAAATATCCAAACA
AACTCGATAACAGAATGCGTGTTGCATTGTGGGTTAAATCAATGCATGGA
ATCAGTACGAGATCAAAATGGTAGATGTTATTGTACGAACGAGGAGCATT
GCATATCGAATGAAGAAGAAGATTCTGAGTTAGTCTCATGGATAAAGGGT
AAGTAAGACATTTTGAGCATTTTATAGAAAACAGAGCCGGCTGTAATGTT
CATACACTGTGATACTTTGCTAAACAGTCCGTTCCCCTTTGCTTTTCGAT
TTTTTTTGTTTAGGAAAGTTTTCTTAATATCCCCTTTTGAGCTATCCTTG
GTTAGCATTAAAAAGAGACAAAACCAACATACATTTCTAAAATAAACATG
GTAACACTGGAAGGAATATACGCTAAATTGTAGATATAAAGTGACGGATA
TATAGTTAATTAATAATTGGTATAATAAATATTTCAAGTACATGCCGTGC
ATAATATATTGATTATTTTGGAATTATTACTACTGAGAAACAAGCTCCCC
CCTCCCCCTTGCGGTGCGTATTACTATACTAACTGATGGGTTAGTATAGT
AATACGCACCCAGCATTGTAGTAGGGGGGAAGGGGGGGAAACCTGGTTGA
ATGAACTTAATTTTTAGAAAATTATCATATATTATGCACAGTATAGAATT
TCCTAAAAATAAACTAGAATTGACCTTAACGAGAAAAAAAATCGATTGCG
TCTATAGAAAAATTTGTATAAGTGATATTAAGCTTTAAGTGTTCTGAACT
ATTATCGAAAAGGGGATTGTTAATCGATTCTTTCTTCACGCTGTCAACAG
TCTGTTGTTGAATTTTAGTAATCCTAATGTTCCACTATTTTCGCTTTTTT
CTATAGCACCATTTGAATTACTAACAAACGAGCCGATATGCTATTCCGGA
AGGGACAACGACTTTGCATCCTTTATCATCTCACGTGAGGGCAGAGTAAA
GGCGTTCAAGCTGGTTCACGTTTCAGGGGCAATCTATTGTTCTTCTCCAG
CAATCAATAAAAAACCAAGCACGTGGGGCTGCAACCATTGGGCGTTTCCC
GAAAACCATTTCCTAACAATCATCTCAAATGCTAATAACAAAATTATTAT
ACAGAAAACACACGATTCGACTCAGGATAAATATGGGAAAGAGTTTTTGT
TAACGGCA Coding sequence (CDS) from alignment at sc0000464:146728..147985- >TCONS_00023884 ID=TCONS_00023884|Name=TCONS_00023884|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at sc0000464:146728..147985- (Clytia hemisphaerica)
CACCATTTGAATTACTAACAAACGAGCCGATATGCTATTCCGGAAGGGAC
AACGACTTTGCATCCTTTATCATCTCACGTGAGGGCAGAGTAAAGGCGTT
CAAGCTGGTTCACGTTTCAGGGGCAATCTATTGTTCTTCTCCAGCAATCA
ATAAAAAACCAAGCACGTGGGGCTGCAACCATTGGGCGTTTCCCGAAAAC
CATTTCCTAACAATCATCTCAAATGCTAATAACAAAATTATTATACAGAA
AACACACGATTCGACTCAGGATAAATATGGGAAAGAGTTTTTGTTAACGG
CATTCTTTCAAATGATATCTAACCTCGACTGCAATTTTTATGATCAAGTT
TCAAAACTTGCGTCAAAAACGTGCCTGAATAATGTTCAAAATATCCAAAC
AAACTCGATAACAGAATGCGTGTTGCATTGTGGGTTAAATCAATGCATGG
AATCAGTACGAGATCAAAATGGTAGATGTTATTGTACGAACGAGGAGCAT
TGCATATCGAATGAAGAAGAAGATTCTGAGTTAGTCTCATGGATAAAGGC
ACCATTTGAATTACTAACAAACGAGCCGATATGCTATTCCGGAAGGGACA
ACGACTTTGCATCCTTTATCATCTCACGTGAGGGCAGAGTAAAGGCGTTC
AAGCTGGTTCACGTTTCAGGGGCAATCTATTGTTCTTCTCCAGCAATCAA
TAAAAAACCAAGCACGTGGGGCTGCAACCATTGGGCGTTTCCCGAAAACC
ATTTCCTAACAATCATCTCAAATGCTAATAACAAAATTATTATACAGAAA
ACACACGATTCGACTCAGGATAAATATGGGAAAGAGTTTTTGTTAACGGC
ATTCTTTCAAATGATATCTAACCTCGACTGCAATTTTTATGATCAAGTTT
CAAAACTTGCGTCAAAAACGTGCCTGAATAATGTTCAAAATATCCAAACA
AACTCGATAACAGAATGCGTGTTGCATTGTGGGTTAAATCAATGCATGGA
ATCAGTACGAGATCAAAATGGTAGATGTTATTGTACGAACGAGGAGCATT
GCATATCGAATGAAGAAGAAGATTCTGAGTTAGTCTCATGGATAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023884-exon-sc0000464-1575043694:147738..147985 | TCONS_00023884-exon-sc0000464-1575043694:147738..147985 | Clytia hemisphaerica | exon |
| TCONS_00023884-exon-sc0000464-1575043694:146728..147029 | TCONS_00023884-exon-sc0000464-1575043694:146728..147029 | Clytia hemisphaerica | exon |
| TCONS_00023884-exon-sc0000464-1510915933:147738..147985 | TCONS_00023884-exon-sc0000464-1510915933:147738..147985 | Clytia hemisphaerica | exon |
| TCONS_00023884-exon-sc0000464-1510915933:146728..147029 | TCONS_00023884-exon-sc0000464-1510915933:146728..147029 | Clytia hemisphaerica | exon |
| TCONS_00023884-exon-sc0000464-1491911889:147738..147985 | TCONS_00023884-exon-sc0000464-1491911889:147738..147985 | Clytia hemisphaerica | exon |
| TCONS_00023884-exon-sc0000464-1491911889:146728..147029 | TCONS_00023884-exon-sc0000464-1491911889:146728..147029 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000464 | supercontig | sc0000464:146728..147985 - |
Blast
The following BLAST results are available for this feature:
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