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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023690 ID=TCONS_00023690|Name=TCONS_00023690|organism=Clytia hemisphaerica|type=transcript|length=2343bpRun BLAST on NCBI protein sequence of TCONS_00023690-protein >TCONS_00023690-protein ID=TCONS_00023690-protein|Name=TCONS_00023690-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp MGDQPPSVYSRLEDVYNNVSVAKERLEEIRNHFLKKYDEEPTFYCRAPGRRun BLAST on NCBI transcript from alignment at sc0000458:204321..248834+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023690 ID=TCONS_00023690|Name=TCONS_00023690|organism=Clytia hemisphaerica|type=transcript|length=44514bp|location=Sequence derived from alignment at sc0000458:204321..248834+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000458:204321..248834+ >TCONS_00023690 ID=TCONS_00023690|Name=TCONS_00023690|organism=Clytia hemisphaerica|type=CDS|length=20970bp|location=Sequence derived from alignment at sc0000458:204321..248834+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023690 vs. Swiss-Prot (Human)
Match: GALK2 (N-acetylgalactosamine kinase OS=Homo sapiens GN=GALK2 PE=1 SV=1) HSP 1 Score: 410.223 bits (1053), Expect = 2.490e-134 Identity = 229/447 (51.23%), Postives = 298/447 (66.67%), Query Frame = 3
Query: 261 VSVAKE-RLEEIRNHFLKKYDEEPTFYCRAPGRVNIIGEHIDYCGYGVLPMALEQDIIIACSLSNDGKYRMSTTVDGMQDKEVDLKDIEIKGHD--WHDYYLCGHKAILAQ-GIDCLQGMKTLVDGTVPKXXXXXXXXXXXXXXXXXXMTANNESFSRLVLGEACQKSEKYVGIEGGGMDQAISYLAEKGTAKFVEFNPLRAVDVRLPNGVSFVIANSLREMTKSEDPGKYYNKRVSECRIAAQILSKKFGKEWRKTRRLVDTQNVLEKTLPEMVELVE-MLNKTPYTREEICKELEITDDELITECLNPTTAQAQEFKLYNRAKHVYSEANRVLRYKEVCASDVENKTKVLGDLMNESQESCSKDYECSCAELDELTEICRNAGALGSRLTGAGWGGCTVSLVPTEKVDEFISKVKTQYYDPQPTRRERVKEALFATEPGSGAAVL 1586
V VA+ RL +++ F K+ P FY RAPGRVNIIGEHIDYCGY VLPMA+EQD++IA +++ T D +I+I WH+Y+LCG K I G+ L GM LVDG +P S+GLSSSSALVCC+ LV++T + S++ L E C KSE+Y+G EGGGMDQ+IS+LAE+GTAK +EF+PLRA DV+LP+G FVIANS EM K+ ++N RV ECR+AA++L+K +W K RL + Q L +L EM+ + E L+ PY EEIC+ L I+ +EL T+ L+P T FKLY RAKHVYSEA RVL++K++C EN ++LG+LMN+S SC YECSC ELD+L +ICR GA GSRLTGAGWGGCTVS+VP +K+ F++ V YY K++LFAT+PG GA VL
Sbjct: 11 VQVAEHPRLLKLKEMFNSKFGSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTNPLYPDFSTSANNIQIDKTKPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKAAT--SHFNIRVMECRLAAKLLAKYKSLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQRSDGSLAPEKQSLFATKPGGGALVL 455 The following BLAST results are available for this feature:
BLAST of TCONS_00023690 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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