TCONS_00023677 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023677
Unique Name	TCONS_00023677
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1076

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000458:50714..56675+

transcript sequence

>TCONS_00023677 ID=TCONS_00023677|Name=TCONS_00023677|organism=Clytia hemisphaerica|type=transcript|length=1076bp
TTCGAACCAGCAATGTCAGTAgggatggaaaaaattgcaaattattTGCA
GATCCAAAGACTTGCACAGATGATTTTACAAGACTATGGAGATGAATCAA
TCACATTGCTTTGTGTACTGAAAGGTGGATTCCGATTTTGTCAAGATTTA
ATGACCAGTATTGGGGAACTCAACAGAAGTGCAGAAAAATCACTACAAAT
GAATATCGAATTTATCAAAGCTAAAAGTTACGTTAATGACCAACAAGGAA
GTATTATGATCTCATCACATGGTTCGCCGCTAAATTTAGAGGGAAAGAAT
GTCTTAATTGTCGAGGATGTAGTTGACTCGGGAAGAACGAtggaaaaatt
gattgaaaaagtgTCAGAAGACAAACCAAAATCATTAAAAGTTGCAACAC
TATTgctgaaaagaaataaaaattcaacGGGATATAGACCAGACTATTTG
GGCTTTGAGATTCCAGACACTATTTGGCTCATTGGATACGGTGGTTTCGA
TTACAACGATTATTTCAGAGATCTTGATCATATTGTTATTTTGAATGAAT
TCGGACGCAAGAAATACACGAGATGATATTGTACATTGCTGCCCAATTGC
GCAATACCTGGGATCGCGGATTATTTGGAATTGCACTATTTTAACTTGCT
TCGTATAGTATTAAACTTTTGAAGGAAAGGGCTTGGTGCCAGAATGACAT
TACGGAGTTATATGTGCACGTTTACGTCTTCAAATTATGATTANGGACAG
GGCTTGGTGTCAAAAAGACATTACGGAGTTATATTACGTCTTCAAATTAT
GATGGCCTCCCCATGTAAGCTGGTTTGGTAAAATCTAGCATGCAGATTTA
CTGTTTTTGTCGGTTATTTTGAGTTTCGAATGATTATTTTAGAATCAAGA
TATTATGATATCgaatattttagattttaactttaaatcttttaaaagaa
ttttttacaGTTGATGTTATATTTTaaatgttgttgttattttctaaATT
ATTGCTTGTTGtagttatattttttggaattgtCATTAAAATACACACAG
TTTGTGTCATGAAAAGCCTACGGAat

Run BLAST on NCBI

transcript from alignment at sc0000458:50714..56675+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023677 ID=TCONS_00023677|Name=TCONS_00023677|organism=Clytia hemisphaerica|type=transcript|length=5962bp|location=Sequence derived from alignment at sc0000458:50714..56675+ (Clytia hemisphaerica)
TTCGAACCAGCAATGTCAGTAgggatggaaaaaattgcaaattattTGCA
GTGAGGGTTTGattatatgattatttttactgGGGAAAAAAGTTAGAGTA
TACTTTTTCAATAGTTACAATatgatttccaatttttctaaTGAGAAGAG
GTCCCAGTGGGTTTGTGAATAGGGGTGTGGGATGCGAAGAACCAAATTTC
GATTGAGATAAAAATTCGTCTATTTAAAAAGCGTGGATTTATTCTATCAT
TTACAGTCGCACAAATACAGTGAGGCTCTTCGAAATTTCGGTTAATTTTG
CAATATGGCAATGAAATTTCTAGATGTTATTCGAACGAATCAATAATCGA
ACTAAATTGGCCGTAATCGATATTATTTATTGAGACTCAATACCGTTCAA
CTATCAGATTATaagtttttttatcacattCGAATTTGTTTCATTGTTTG
TCGGTTCTATTCGATTTAGCGGAATTCGGAAGGGTGGTGGGTTTAATCAA
CGGTCAGCGCCAACTCAgcgaatgagtagcttagattagGTGATCTGATC
TTGGTGGTAAGTTACTGGGTGCTGAGAGTAGGTGTAGCGCTTACTTTCTC
CGACGCATTAcgtcatgatattcatgacgtaatgttttctacggaaagcc
agtagtggcaaattttaaacaacttttgtctagttttaagttgccactac
tggctaaaaccggggtatttctgtaaaaaacattacgtcatgaatatcat
aaatttcttatacattcATTCCCATTCCATAGGATCCAAAGACTTGCACA
GATGATTTTACAAGACTATGGAGATGAATCAATCACATTGCTTTGTGTAC
TGAAAGGTGGATTCCGATTTTGTCAAGATTTAATGACCAGTATTGGGGAA
CTCAACAGAAGTGCAGGTAAATGATTTCATTCATGATATGAAGAAGTGAT
TTTTACTGCGATTCAGCCTACCAGAAAGAATCATCGACTACCCGAAACGA
AAAGAAGCCATTCTACTGCTTATATTCAATTATTGTATCTTAAGGCCGGC
CTCCACTTAAGCGCGCTGCATTCGCACcatttggcttcaatcctttttgc
ttggaaaaaagattacgtcataaaaatgtagcgcgcgctggaaaaaaaag
ttgaatgcaTCGCGCCAatagaattgcttcatttttcttttgaccaatag
cgtggaagctttgctagataaagtgcgatcgcagcgcgcgcaagtggaga
ccggtctTTAGTTATAAAACGTCCGGCAAAAGGTGGGACCGACTTTGTAT
AAATCAAAATCCTTATATGCTATATAAATGTATAATCTAATGACTCgatt
tcttttgcaaaaaaaacatctttaccTTTTGTTCCTTCTAGAAAAATCAC
TACAAATGAATATCGAATTTATCAAAGCTAAAAGTTACGTTGTAAGTGTa
cttaaaaattctaaaacttcAGTTCCTAACTAATTCAGCTGAACATATGA
TTATTACCATGTGTACCCTTAAACCCACCCAGGAAACCTAACCAAGAACG
CTCTTTGGTTGTGATAGGGCTATAGGACACAGACATTTCTTGACTACTAA
CGACCGTAAAAATTCTGAATCTTAGTTTAGAAGAAAATCTCTCGGAGATT
TTCCAACTCTAGTCTGAATCTTATAAGACTTCCTATAAAAAACTCTTTTC
GCtggaggatgagcagaagcctagccCAACTTTAATAACTTCTGTTTGTC
AGATCATTTCCCTGCAAGCTGTAAACATTCTTTAGATAGCATTTTCTGTT
ATTTTACAGAATGACCAACAAGGAAGTATTATGATCTCATCACATGGTTC
GCCGCTAAATTTAGAGGGAAAGAATGTCTTAATTGTCGAGGTAATTAGAA
ATATTACTGTTTCGAGGTTCGTTATTTTATAAGAAGCAAAGTAAAGCTGT
GTCAGTTTCTCTATAGTCAAATTTCCAAAACATGTCGCTTTTCAAATCCC
TCGAAACGGCAAAATTGATAAGCAAAATTCGACCATTTTTGCATAGATTC
TCAAGACGTTGTAACATTTTGTAAACTCATTCAATAAAGAGCCTTCTTAA
ACTTGTTTGTGACCTGTAATCAACAATTTACGCCAGACCTGTATTCTGGG
GGTCACCAGCATTCTGGGGGGAGGGGTCCACAActttaatttagaaattt
ctCTTCAAACAATCAATTCTTTCGGAGAATTATTTTATGAGAAGGAACTT
TAATGGATACCCTGTCTTTGTGTATAAATTATACGTACACTTTTTACGGG
ACACACTCTAAATGACTCACATTagagttttgatgtgtttttGAATCTTT
TGTAGGATGTAGTTGACTCGGGAAGAACGAtggaaaaattgattgaaaaa
gtgTCAGAAGACAAACCAAAATCATTAAAAGTTGCAACGTAAGTGTCTTT
GTCTGCTATAACTGGTTCTTGATCTCGTGCATTCGCGCAATTTTTTCCGA
AATCCACGCAAACTTGGGTTAAAAAAGCAAATCCACGTATCCCCGTGAAA
AAATTGCGCTATGTACGCATTGACGGCGCTATATAAGTCGTTTTTAAGGT
TCAGTTGCCTTCTTGCATACCTATAAGGAGGGGGGCTATGGAAAGGGAAC
CTTCTGGTCGCCCTCAGCTGCGGTCGCGAACTTTCTTCAAAGAGTTGATT
CCATTTAGCTGGTAAGTAGTGTGTGGGTAGTGTGTTTTGTAATATAATGA
TCTTTGTTTTAGACTATTgctgaaaagaaataaaaattcaacGGGATATA
GACCAGACTGTAAGTAAAATGACGTTTAACGCTAGTCGCTTGACTCTGTT
AATGACCTGTCTTTCTAACCTCTCTCATTCTGTGCTAAAAAGTCTCCTGT
CAGTAATTAGATTATCTAAAGAATGAGACACCGGCATTTTATATTGGACG
CTTGGGACTAGTCAAAATGCTACTTTTTAATACAAGCTGGATAGAActaa
ttcttttaaatttcaaactttttttcataaaaaaaaacttttataaaatt
ttcagaTACTCATactcaaaaaaaagaaaaaagttttcaacatTTAAGCT
CAACTTCAAGCAAATATATATCAATTCAAGATTAAGTTTAGCTGGGCCAA
TCTGTAGATACtagatatttcatttttgaagtATTCTCCTCGTGGTTATT
TCATTCTCTACAAAACGGTAAAGCACATGTAatgttgttaaaaatatttt
aaagttatAGCAAAGTTCTCAACTTAGGACTTGCTCCCTCCCTACTTGAA
ATGCGACAAGACCAATTTATCCAAATAGGAGAACATAGTAAATTATTTTT
AACCGTTTGCCCATGTCATGGCCTTCAATAAATATTCTTTAAACTTGTTT
TTCAGATTTGGGCTTTGAGATTCCAGACACTATTTGGCTCATTGGATACG
GTGGTTTCGTGagttttaatcttttttcactGTGATCCAGGACttgtgtc
ccgaaaaaagggAACCGGTTTTTAtctaaagtaaaatcctcataatttat
gcaaaattctATGACTTCTATACTATTACATTCCAATCTTGATAatctat
tcaatcatcttgggaattATATCCAGTTACAATGACAGGTTTtaaggatt
ttactttatataagaATTTGTCCGTTTTTTTTGGGGACACACTGTGTAAA
TTTTCTTACGATTGTTATATAAAGCTACAAATGAGAGCTCTAATAGATTC
GCGCACGCGTATGAAAAGTTATGAAGGGGAAAACTTATGCTAAGTATGTA
CGTATGGATGTCGCCAGCCAAGACCGAGATACCTCGGGTGAGTTAAcgag
gcatgtcccaaatatattttgcgtgacgcgcacagcttcccattattcct
taactctctctcatatatagctcaaaacaatcgtatcaacgagaggattt
cgaaaagtgctgggtcaaaaatttacattaagtCAATCTGaagatatcgg
tcaaaaactgattttgacgttataaaatacatcgaaaaaacccAAACCGA
AATTACATCACATTTTATCCTCGAACATCCCTAATATAAAATGGTATTTC
AATCAATTGTCAGAAATAGTACTAACAATTTTCTCCTCTTTCTGTTACCT
TTGGTTCAAAACCAAGGGGTTTGTGTCAAATGAATCACCACTCTTCCTAT
AAATTagtcaacaaaaaataatggcTATTCATACAGCAAAAATTTATTAG
gaaaattccgaaaaaatcCCAGATAAAAAGAGCCAAAAccaggaaaaaac
atttttcggctcaggtaatgcttagcatatgcttaaatttttgccatatc
tgagcctagatatgcttataaaatataactgcaatgcttataaaaaacat
gtatgtcaAATAAAAGTACCCTTCAAGATTGACCTCAAACTCATACAAAC
TGTTCATGGTTCATAAAAATCTTTACCCATCTGGATGTCAAAGAATAACT
GATTTTCAATATCCTGTTGAATGGTAACCAACATGTTGGAGAAGAGCTTA
CATGGACCCTGTGCGGAAAAGTTATTGTAAGGTATCTTTAGCCATTGCAA
GATTACTCCTTGCTTGCATAGATTTCAAGTTTCCCTTCATCAATGGTTGA
GCCTTGTATAgcatttctttgattttagcGAGGTAGTTACTTAGAGaggt
tttgttttctttttgtagGATTACAACGATTATTTCAGAGATCTTGATGT
AAGTCCATTTTAATTCTCCAGTGTCTTCTGCTGTTCGTGATACTCCTACC
CCTGTTTATGTGACTGTTTATGTGACTGTTTATGTGACTCGgtgaaaaac
tttttgcaaCGTTGTTTGAATAAGCAACCCCAATTTTATGCTCGAGTCTT
GAGTTGCTAAGGATTTTCCGTATTTCAGCCAAAAAGTTGGTTATggattt
tgagccaaaaatgctTAGCAACTTCAATTATTTTAGCTTTTTATCTGAGT
TAATGTCCAAAATACCTTAAATAGGTTATTCAAATACCATCGGTATACAT
TTTGATGCCAAGTTATACTGAAAATACTtctttaaaaatacttttttagg
tatttttggTTGCTTTCCCGGTCTATACTTAGTTTCAGGGCTAGGTTGCA
AAGCCAAGTTGCTTATTTTTTGGCAACTATTAGGGTCCAGCCCTTAGCGA
TTTAAGGGATTTAATTTAAAGGTACTTAACTTGGTCAAAcagctttgttt
tgatttcaaaactcATTGACACATTACTGCTGCTACTATTTCATAAGTTT
AGAAACCCTCTTGCATAGGTCATTGACATAAAACGACATTTTGAAGTGTA
CTCTTGTTTTGTCAACAGAGAATCATGTTATTGATCAACTGTTTATTTTG
GTTCCCGTTTATAGCATATTGTTATTTTGAATGAATTCGGACGCAAGAAA
TACACGAGATGATATTGTACATTGCTGCCCAATTGCGCAATACCTGGGAT
CGCGGATTATTTGGAATTGCACTATTTTAACTTGCTTCGTATAGTATTAA
ACTTTTGAAGGAAAGGGCTTGGTGCCAGAATGACATTACGGAGTTATATG
TGCACGTTTACGTCTTCAAATTATGATTANGGACAGGGCTTGGTGTCAAA
AAGACATTACGGAGTTATATTACGTCTTCAAATTATGATGGCCTCCCCAT
GTAAGCTGGTTTGGTAAAATCTAGCATGCAGATTTACTGTTTTTGTCGGT
TATTTTGAGTTTCGAATGATTATTTTAGAATCAAGATATTATGATATCga
atattttagattttaactttaaatcttttaaaagaattttttacaGTTGA
TGTTATATTTTaaatgttgttgttattttctaaATTATTGCTTGTTGtag
ttatattttttggaattgtCATTAAAATACACACAGTTTGTGTCATGAAA
AGCCTACGGAat

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013297	XLOC_013297	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000458	supercontig	sc0000458:50714..56675 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.2645	0.652994	0.547025	0	0.490036	0.148304	2.32285	2.06085	0.871829	1.15743	0	1.28997	7.66212	13.8662	0.962098	1.4808	13.9787	17.9171	23.2018	8.59687	152.156	153.782	81.6631	89.9124	30.9053	24.0087	71.7798	152.006	193.726	173.58

Blast

[Close]

BLAST of TCONS_00023677 vs. Swiss-Prot (Human)
Match: PRDC1 (Phosphoribosyltransferase domain-containing protein 1 OS=Homo sapiens GN=PRTFDC1 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 7.430e-52
Identity = 85/174 (48.85%), Postives = 126/174 (72.41%), Query Frame = 1

Query:   49 QIQRLAQMILQDYGDESITLLCVLKGGFRFCQDLMTSIGELNRSAEKSLQMNIEFIKAKSYVNDQQ-GSIMISSHGSPLNLEGKNVLIVEDVVDSGRTMEKLIEKVSEDKPKSLKVATLLLKRNKNSTGYRPDYLGFEIPDTIWLIGYGGFDYNDYFRDLDHIVILNEFGRKKY 567
            +I+RLA+ I++D G   I +LCVLKGG++FC DL+  +  ++R++++ + M ++FI+ KSY NDQ  G + I        L GKNVLIVEDVV +GRTM+ L+  + + KP  +KVA+LL+KR   S G+RPDY GFEIP+ ++++GY   DYN+YFRDL+HI ++NE G++KY
Sbjct:   52 RIERLAKDIMKDIGYSDIMVLCVLKGGYKFCADLVEHLKNISRNSDRFVSMKVDFIRLKSYRNDQSMGEMQIIGGDDLSTLAGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLLVKRTSRSDGFRPDYAGFEIPN-LFVVGY-ALDYNEYFRDLNHICVINEHGKEKY 223

The following BLAST results are available for this feature:

BLAST of TCONS_00023677 vs. Swiss-Prot (Human)

BLAST of TCONS_00023677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PRDC1	7.430e-52	48.85	Phosphoribosyltransferase domain-containing protei...	[more]

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TCONS_00023677 (transcript) - C. hemisphaerica