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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023571 ID=TCONS_00023571|Name=TCONS_00023571|organism=Clytia hemisphaerica|type=transcript|length=2591bpRun BLAST on NCBI protein sequence of TCONS_00023571-protein >TCONS_00023571-protein ID=TCONS_00023571-protein|Name=TCONS_00023571-protein|organism=Clytia hemisphaerica|type=polypeptide|length=729bp MAEATAFSTKFSSEIESDERNISKMDEDSDKVTTIEETMTKAPLAWIHNQRun BLAST on NCBI transcript from alignment at sc0000456:210232..220307+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023571 ID=TCONS_00023571|Name=TCONS_00023571|organism=Clytia hemisphaerica|type=transcript|length=10076bp|location=Sequence derived from alignment at sc0000456:210232..220307+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000456:210232..220307+ >TCONS_00023571 ID=TCONS_00023571|Name=TCONS_00023571|organism=Clytia hemisphaerica|type=CDS|length=24090bp|location=Sequence derived from alignment at sc0000456:210232..220307+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023571 vs. Swiss-Prot (Human)
Match: SIR1 (NAD-dependent protein deacetylase sirtuin-1 OS=Homo sapiens GN=SIRT1 PE=1 SV=2) HSP 1 Score: 433.721 bits (1114), Expect = 1.473e-138 Identity = 194/322 (60.25%), Postives = 251/322 (77.95%), Query Frame = 1
Query: 178 APLAWIHNQIANNANPRDILSQLVPELNIPDHVDDLSLWRLALEILSEPAPRQRLQEVNSLEHVKNLLQTCKKIVVLTGAGVSVSCGIPDFRSRDGIYARLSKDYPDLPNPQAMFDIHYFKSNQWPFFKFAKEIYPGQFTPSLCHRFISFLDRTGRLLRNYSQNIDTLEQVAGIKNVVQCHGSFATATCMNCKFTVSCEEIKDEIFNQKIPHCKKCSVNTVEDGRINVIKPDIVFFGESLPESFHRQIQDDKDKADLLIVIGSSLKVRPVSLIPNLIRPDVPQILINREPLSHMSFDVELYGNCDDVIAELCTQLGSEWTNV 1143
P ++ + +PR IL L+PE P +DD++LW++ + ILSEP R++ +++N++E LLQ CKKI+VLTGAGVSVSCGIPDFRSRDGIYARL+ D+PDLP+PQAMFDI YF+ + PFFKFAKEIYPGQF PSLCH+FI+ D+ G+LLRNY+QNIDTLEQVAGI+ ++QCHGSFATA+C+ CK+ V CE ++ +IFNQ +P C +C D + ++KP+IVFFGE+LPE FHR ++ DKD+ DLLIVIGSSLKVRPV+LIP+ I +VPQILINREPL H+ FDVEL G+CD +I ELC +LG E+ +
Sbjct: 183 GPYTFVQQHLMIGTDPRTILKDLLPETIPPPELDDMTLWQIVINILSEPPKRKKRKDINTIEDAVKLLQECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFDIEYFRKDPRPFFKFAKEIYPGQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGIQRIIQCHGSFATASCLICKYKVDCEAVRGDIFNQVVPRCPRCPA----DEPLAIMKPEIVFFGENLPEQFHRAMKYDKDEVDLLIVIGSSLKVRPVALIPSSIPHEVPQILINREPLPHLHFDVELLGDCDVIINELCHRLGGEYAKL 500 The following BLAST results are available for this feature:
BLAST of TCONS_00023571 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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