TCONS_00023543 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023543
Unique NameTCONS_00023543
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023543 ID=TCONS_00023543|Name=TCONS_00023543|organism=Clytia hemisphaerica|type=transcript|length=1257bp
AGCCCGTCGACGTGATAGTTGATATGATGGTGAGAACATGTTGGCCGGCT
GAGTACGAACAATCTAAGCAAGCTGCCATTTCGGAGTCTACTACCTTGAA
ATtTGAGAGCGACAATATTGTAACGACACCCGTCTTTGTGTGTATGGCAA
CATTTCCAATGTTGGAATGCCCGTTGCACGTCTTCGAACCACGTTACAAG
TTGATGATGAGGAGATGTCTAGATTCCCCTCAACGATCTTTCGGAATGTG
CATATATGATGAAGCTAATGGtttcaaaGAATATGGAGTTATGTTAGAGA
TGCAAGATCACCAGCTGTTAGACGATGGTAGGATGCTTGTAAATAGTATT
GGTGGTAGAAGATTCAAGGTTTTGGAAAAAGGTTCGCGGGATGGATACTC
TACAGCCAAAGTTCAATTACTTTACGATCAGCCTGTCGAAGTCAATGAAT
TGAAAGACTTGGAAAACACAGTTTACACTGAAAGTAAATCCTTCTTCAAT
ATGTTACCTACAGTCATCAAGcATACAATTCGCATGAAATATGGTGACCT
TCCTGAACAGAATCAGAATGAATTGACCAGTGAACATGGTCCAAAATGGA
TCTGGTTCATGATTCGCTTGATGGTACACAGCGATGATGATGCACTCGCT
GCGCTGCAAtgtcaaaatgtgacggaaagaTTAGAGCTTGTTCGCAATCA
TATTGTTGCCACGCGTGAGAGGATGAATGCTCCATGAGAGAGAGAGGTTT
ACTGGAGAGTTACCTTCTGGAAGGAGTTGAAATTATTTGGTGAGAAGGAC
AGCTGGTTCGAAGACCTTCATTAACTTTGGAGAAATCTACTTTAAAAATG
ACTTAATTTATTAAATGGTTTAAATGAATTAATAGTTAAGTTAAAATCAT
CagaatttataattttatttgaatctaTGGTATCGAAAAACCACCAAGAA
AAACcacaaagaaaatttggaaCCTGGTTAACCTGGGATTGCAAAGCAAG
AATATCGTACAACGATTGCAACGTGAACATactacaaattttacaaattc
tcGAGGGAAGAACCTTTTGTGTTACCTATTTAACTAAAAGTCTTGAAACA
ATCATGATCTCTGTCTCGAGGGAGTATTATTTTTGTACTTTTCATTACTC
CCTTACTTGTGTAAATCTTGTAAATAGTCATTAATAGTTTCTTaaaattg
gaatttttatttttttgaaaaaaatattgatttttgtgcCAAATTCAGCG
ATTTTGT
Run BLAST on NCBI

transcript from alignment at sc0000456:70664..77151+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023543 ID=TCONS_00023543|Name=TCONS_00023543|organism=Clytia hemisphaerica|type=transcript|length=6488bp|location=Sequence derived from alignment at sc0000456:70664..77151+ (Clytia hemisphaerica)
AGCCCGTCGACGTGATAGTTGATATGATGGTGAGAACATGTTGGCCGGCT
GAGTACGAACAATCTAAGCAAGCTGCCATTTCGGAGTCTACTACCTTGAA
ATtgtaagttaaaattttttttataacgcATTCCAATGGAAACCCACTAA
ACTATAAAGCAGGATGTCTTAtcatgaaaaatttaatcttACTCGAATTT
TGGCCGCAGTGCTTGATGCGAATTGTGATGGTTATGCCACgaccaaaaaa
aagtattgtCTCGTGATACGAGATGACTTCTTCTAGTGTGTAAAGGGCTT
TAAGTCAAGAGAAGATCGGCCGACCAAAAAGCATAAATTACTTCTTTGAA
ATTCCTTTAGTTCATCTTGTTACATAATTTGTGTATGGTATATTTCAAAC
ATAGACATGTCGCTTTTTaatctaaatatttccttccctctatttgtcat
ttttttcaaaacgtttAACTTACGTAACTATATAAAATGATATGAGTACA
GTATCACTTTAAAAATCTTGTAAGTTTACACTATAAACTTATTTTTCTTG
GAAACTTTTCAAGAGATCCTCTTCTCATTAAGTTGCgcaattttttgctt
ataatgGAGATTTAACCTCAGTGATATTAAGTTATGTAAGAATCTTTCAT
GAATTGTAATGACGATGATTATATTTTATGTTTCATAAATATAAAACAGT
ACATCTAACATATTCTTTCTTTCTTACATAATCTAAGACGATTTCTCTCT
TGTCACGGAATAATCACTCAATCTTTTGAAATGTTCCTTTTCTAGAGCTT
TTTTTGCATTGCACATACTTCTATAAACCATCTTATGTTATGAAGTAATT
ATTTTTCCCTTCCTAGCTCCCTTATGTTTTAAACCTTTAAGCTAATCCGT
TTCCTTTATTgtgaaattttcattcatttttttataagaacaattttatg
agaacaacgaggctcaataAGGCCGAAAACGATACTTTAGAACAATGCTT
AGCCTGAAAATGTAAGGGTGCAAAGCCTGAAAACCTAAAAAATCGCtctt
gaggctcaaagtgccaaaacgAGAAAATCCGAAATATTTCttgtttctta
tataaaaaagtgtatttatgatcgattttaaaatttcattttccaagagg
caaggtgcatgaccataagATATTTTTACTTTGAGCGACCTTTCTCCATG
ATTACGAAATCTCTAATATAATATGATCAAACTTCAGGATACTCCCCTAA
TATTTAAATCTTCAATGTTGGCAAAGCCCCTTCCCCCTTGGTGCGAATGC
AACATAATGAAATCCCGGTCTCATTGTCCCTGGTGAAATTTTGATTACGA
CTACAACGAAAATCGCTTGTTCAGTTTACGGGGATTTTAGATTCTAttct
tttaaactcaaaaatctAGTGagaattcacaaaatttttaaactttccaT
GGGAATGAGAGGGTAGTTTTCAAACAGGATATGTTCTCACAGTTTGTCGG
CACTTGGTATGTGCCACTACAGGGGTGTTCTAAAGTTCGTCTCGATTTTG
AACCAGTATTCTCTCTCTTTCACCAGTGAGAGCGACAATATTGTAACGAC
ACCCGTCTTTGTGTGTATGGCAACATTTCCAATGTTGGAATGCCCGTTGC
ACGTCTTCGAACCACGTTACAAGTTGATGATGAGGAGATGTCTAGATTCC
CCTCAACGATCTTTCGGAATGTGCATATATGATGAAGCTAATGGGTAGGC
AGAATTTCTTTTATTATTAAAGAACATCCTTTAACCTCAATGTAACTAGT
TTTGGTATTCGGAAATTGAGTTCAGTTTCAAGGACATGTTCTTCATCTAA
TAGTgcaatgtctttttttttcagtttcaaaGAATATGGAGTTATGTTAG
AGATGCAAGATCACCAGCTGTTAGACGATGGTAGGATGCTTGTAAATAGT
ATTGGTGGTAGAAGATTCAAGGTATGAATTGTTGTGTaaaccctcccccc
cccccaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNcccccccccccccccaattaaAGTAAACGACCGATCGTACGTGG
GCCCTTAAGGGTCCTttttcccaaagtgcactgtgaGGGTCTAAATGAGC
AAAAACGAGAATAAGTGCACTCTAAGTgtctaaaatttgagaaatctgac
catattttgccttaaaatagtcaaagattttcaaatacACTCAAAGTAAG
GGTAGATTTTACGCCCGAATTTACTCTGATTTTGGACCGCATTACGGTCG
TAAATCTTTGTTGGGATATGACTTCAGTTTGGACAAGTTGCCCAAACGAA
TGAATCAAAATAAGTCAGCCAGAAAAATTCcaaatttgtttatattttta
tatttttttaaaccgttcataattttcttcatACTTGACAGGTTTTGGAA
AAAGGTTCGCGGGATGGATACTCTACAGCCAAAGTTCAATTACTTTACGA
TCAGCCTGTCGAAGTCAATGGTAATTTCtttaaacttaaactttgagaTG
GTGTTGTTTCACACCTTTTTATTTCCAATTGCAGATCATAGAATTCGGCT
TGACTCGCCAAGtaataaagtctgtctcaatataatcttcaACGGAAACA
AAAAAGGCTCTACCTCCTGAAAGAATTCAAATGTAATGGTTtggtgcttg
ttgaaaagattaacatgtgtgtaatttattaccaaaaaggaaaaaaaatt
caaaaaagatatgaaaatgaagatttaaaatgaagaacaaaaaagcaact
ttttttataattatactaTAGTTTTCATTTTCGCACGAGCGATTCTTTGA
TCTAAGAAAAATTATTCTATCGGAAGATTTAGCCCATAGTTAATCTCTGA
CTGACTTCCTAAACAATAAAAAGGAGCCCCTGTTCTCGCCAACTAGGGAA
Tagttttaagctgtattttttgactcaataaatattttttaaatattttt
tcgcTTTTATGACGTTCAAAGACTAAAGAGTTTCTGATACAAAGATGAAA
CTTACAGCACTATTCTGCAAGAagttcatttttggacctaccccggtggg
gtggaggtcctataaattgacccgtgttcgttagttagttagttagttac
caacttttctcgagattggctcattcaatttttctgattttttgcacaaa
ggtgcattactataaaccctcgNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctccgttccaatagatat
ataaatcgaaatttaaaattatacattacttccattaaattctaattatt
cgttttataaataggtaggtccattaaagtattacttgtcttctccattt
ttcatcttcatttttgaattttttgaattttgatagtATTCCACTTGGGA
ATATACCTTTTTTACGGGATCTACAATcggtgccataacatattggcact
tttggctaatttaccatttttcgaaaattgaagttcgagcgagaatgtca
attccaggccttcaacttgatttcaacgattatttcgatctgggagggat
ttattggtttctaggctatatttcaagccctactgtgccatttttgaact
tttggatcctcagaacctaaggtcctaagtcttaagtctagcgttaaaac
tcagagttaaaattctacccttccaacctactttagagcacttgcaaatc
gattgtggtttcaaaacaccccggtggatttcctttttgtgccaagtatt
tcgtAACCGATTGTAGTTcaaattctataaaaaattatagcctttttgtc
tccgctgcagattatGTTGAGATAGACAGACATAGGTAGGTCGATGACTA
TATTATATGCTTGATATTTTTCTGTGACCTATATTTTTGCCTTTTAGAAG
AATTGAAAGACTTGGAAAACACAGTTTACACTGAAAGTAAATCCTTCTTC
AATATGTTACCTACAGTCATCAAGGTAATATAACCAAATAGTATCAATCT
CTCTTCACATTATCATGATATCTTTGTATCAATTAAAAAGGAATACATAT
ATGTATATACCTTATGTATTTAGCTGAGACCCCTCTTTAAACGTTTTAAA
CGTTGCCTCTTCCAAACCCTTAGAAGGAGGAGTTCAGAAATGTTGATGTC
TTTCTCAGCGATCTAAAAACAAGTAGATGTAGTGAGTTTTTTGAATAGAG
GTCAATTTCAGGCTACGACTTTCCTATCGACTTTTCCAATAGAGATTCGT
TACATTACGAGTGTATGAATAAAACCAGTAACCCATGCAATGTTGTCATA
CACCCCATAAATTTCTAAAGGTCTACGTACGTCTAAGGTCTACGGTACGG
AGACATTCAACATAACTCAAAATGTGAATCTACGTTGATGCTCTAAAGAA
AGAATAAATATTACACTATCTACTATACCATacaaattgttttgttgttt
agcATACAATTCGCATGAAATATGGTGACCTTCCTGAACAGAATCAGAAT
GAATTGACCAGTGAACATGGTCCAAAATGGATCTGGTTCATGATTCGCTT
GATGGTACACAGCGATGATGATGCACTCGCTGCGCTGCAAtgtcaaaatg
tgacggaaagaTTAGAGCTTGTTCGCAATCATATTGTTGCCACGCGTGAG
AGGATGAATGCTCCATGAGAGAGAGAGGTTTACTGGAGAGTTACCTTCTG
GAAGGAGTTGAAATTATTTGGTGAGAAGGACAGCTGGTTCGAAGACCTTC
ATTAACTTTGGAGAAATCTACTTTAAAAATGACTTAATTTATTAAATGGT
TTAAATGAATTAATAGTTAAGTTAAAATCATCagaatttataattttatt
tgaatctaTGGTATCGAAAAACCACCAAGAAAAACcacaaagaaaatttg
gaaCCTGGTTAACCTGGGATTGCAAAGCAAGAATATCGTACAACGATTGC
AACGTGAACATactacaaattttacaaattctcGAGGGAAGAACCTTTTG
TGTTACCTATTTAACTAAAAGTCTTGAAACAATCATGATCTCTGTCTCGA
GGGAGTATTATTTTTGTACTTTTCATTACTCCCTTACTTGTGTAAATCTT
GTAAATAGTCATTAATAGTTTCTTaaaattggaatttttatttttttgaa
aaaaatattgatttttgtgcCAAATTCAGCGATTTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013237XLOC_013237Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023543-exon-sc0000456-1491911889:70664..70766TCONS_00023543-exon-sc0000456-1491911889:70664..70766Clytia hemisphaericaexon
TCONS_00023543-exon-sc0000456-1510915933:70664..70766TCONS_00023543-exon-sc0000456-1510915933:70664..70766Clytia hemisphaericaexon
TCONS_00023543-exon-sc0000456-1575043694:70664..70766TCONS_00023543-exon-sc0000456-1575043694:70664..70766Clytia hemisphaericaexon
TCONS_00023543-exon-sc0000456-1491911889:72240..72407TCONS_00023543-exon-sc0000456-1491911889:72240..72407Clytia hemisphaericaexon
TCONS_00023543-exon-sc0000456-1510915933:72240..72407TCONS_00023543-exon-sc0000456-1510915933:72240..72407Clytia hemisphaericaexon
TCONS_00023543-exon-sc0000456-1575043694:72240..72407TCONS_00023543-exon-sc0000456-1575043694:72240..72407Clytia hemisphaericaexon
TCONS_00023543-exon-sc0000456-1491911889:72538..72634TCONS_00023543-exon-sc0000456-1491911889:72538..72634Clytia hemisphaericaexon
TCONS_00023543-exon-sc0000456-1510915933:72538..72634TCONS_00023543-exon-sc0000456-1510915933:72538..72634Clytia hemisphaericaexon
TCONS_00023543-exon-sc0000456-1575043694:72538..72634TCONS_00023543-exon-sc0000456-1575043694:72538..72634Clytia hemisphaericaexon
TCONS_00023543-exon-sc0000456-1491911889:73155..73233TCONS_00023543-exon-sc0000456-1491911889:73155..73233Clytia hemisphaericaexon
TCONS_00023543-exon-sc0000456-1510915933:73155..73233TCONS_00023543-exon-sc0000456-1510915933:73155..73233Clytia hemisphaericaexon
TCONS_00023543-exon-sc0000456-1575043694:73155..73233TCONS_00023543-exon-sc0000456-1575043694:73155..73233Clytia hemisphaericaexon
TCONS_00023543-exon-sc0000456-1491911889:75864..75937TCONS_00023543-exon-sc0000456-1491911889:75864..75937Clytia hemisphaericaexon
TCONS_00023543-exon-sc0000456-1510915933:75864..75937TCONS_00023543-exon-sc0000456-1510915933:75864..75937Clytia hemisphaericaexon
TCONS_00023543-exon-sc0000456-1575043694:75864..75937TCONS_00023543-exon-sc0000456-1575043694:75864..75937Clytia hemisphaericaexon
TCONS_00023543-exon-sc0000456-1491911889:76416..77151TCONS_00023543-exon-sc0000456-1491911889:76416..77151Clytia hemisphaericaexon
TCONS_00023543-exon-sc0000456-1510915933:76416..77151TCONS_00023543-exon-sc0000456-1510915933:76416..77151Clytia hemisphaericaexon
TCONS_00023543-exon-sc0000456-1575043694:76416..77151TCONS_00023543-exon-sc0000456-1575043694:76416..77151Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:70664..77151 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.272575	0	0	0	0	0	0	0	0.808392	0	0.698784	0.582085	1.69498	0	0	0.777294	0.352404	0	2.25914	1.09021	0	0.886098	0	0.394733	0.270108	0	0.76629	1.93398e-06	1.37196	0
Blast
[Close]
BLAST of TCONS_00023543 vs. Swiss-Prot (Human)
Match: LONF3 (LON peptidase N-terminal domain and RING finger protein 3 OS=Homo sapiens GN=LONRF3 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.906e-46
Identity = 83/232 (35.78%), Postives = 139/232 (59.91%), Query Frame = 3 
Query:    9 DVIVDMMVRTCWPAEYEQSKQAAISESTTLKFESDNIVTTPVFVCMATFPMLECPLHVFEPRYKLMMRRCLDSPQRSFGMCIYDEANGFKEYGVMLEMQDHQLLDDGRMLVNSIGGRRFKVLEKGSRDGYSTAKVQLLYDQPVE---VNELKDLENTVYTESKSFFNMLPTVIKHTIRMKYGDLPEQNQNELTSEHGPKWIWFMIRLMVHSDDDALAALQCQNVTERLELVR 695
            +VI++ ++    P E ++ ++    E   L   + N+   P+FVC   +P + CPLH+FEP Y+LM+RRC+++  R FGMC+ D   GF EYG +LE+++ Q   DGR +V+SIG RRF+VL +  RDGY+TA ++ + DQ V+     EL  L N VY ++  +F+ L   +K+ I   +G +PE++ +   + +GP W W+M+ ++       L  L  +++ +RL  +R
Sbjct:  520 NVIMEELIAKFLPEELKERRKLYEEEMEELSNLNKNV---PIFVCTMAYPTVPCPLHIFEPCYRLMIRRCIETGTRQFGMCLGDPVKGFAEYGCILEIRNVQFFADGRSVVDSIGKRRFRVLHQSQRDGYNTADIEYIEDQKVQGEDCAELMGLHNCVYQQASLWFHSLKLSLKNRILNHFGPMPEKDADPQMNPNGPAWCWWMLAVLPLESRAQLPFLAMRSLKDRLNGIR 748
The following BLAST results are available for this feature:
BLAST of TCONS_00023543 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LONF31.906e-4635.78LON peptidase N-terminal domain and RING finger pr... [more]
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