TCONS_00023532 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023532
Unique NameTCONS_00023532
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length554

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023532 ID=TCONS_00023532|Name=TCONS_00023532|organism=Clytia hemisphaerica|type=transcript|length=554bp
CTAGAATCGAACACTTTTGCTAAACACATGGAAATCTTCAGATGGAAGCG
TTTCGGTTTATTACTTTTAAAAGGACCGAAAAGAGATTCCAGTGAATATT
ATTCAAAAATGCATCGAAGGTTTATTGACACGATAAGCCAACAAGACCTT
TTTGATACTTGCTATTTTACAGATACTATTGACATTCAAAATTCCACCAA
CTTTACCAGAGCCGTCGACATTTTACATCAAGATTTATCGCATAATGTTT
TGGTCTTGTTTGGCAATCCTCATGATCAAATAAAGTTTGTGAAAACTGTA
AACATTTATTTTTATACAAATTTTATCTGGTTCACTCACGACCTTACAGA
ATCTATGATAGACTCAGCTTTCCTATTTGGTGATCAAGAAGAAATAGTGA
TTTTCAACTACCAAACCAAAATGCGTCAATTAATCGTAAACAACGGGGGA
AAATTCAAAAGGCAAATATCTCTActtgaaaaacattttgaacaaaataa
aacggtGGTCGAAACAGCATTTACCCTTTTTGATACGATCTTTGAATTTA
TTGG
Run BLAST on NCBI

protein sequence of TCONS_00023532-protein

>TCONS_00023532-protein ID=TCONS_00023532-protein|Name=TCONS_00023532-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
LESNTFAKHMEIFRWKRFGLLLLKGPKRDSSEYYSKMHRRFIDTISQQDL
FDTCYFTDTIDIQNSTNFTRAVDILHQDLSHNVLVLFGNPHDQIKFVKTV
NIYFYTNFIWFTHDLTESMIDSAFLFGDQEEIVIFNYQTKMRQLIVNNGG
KFKRQISLLEKHFEQNKTVVETAFTLFDTIFEFI
Run BLAST on NCBI

transcript from alignment at sc0000455:264399..264952

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023532 ID=TCONS_00023532|Name=TCONS_00023532|organism=Clytia hemisphaerica|type=transcript|length=554bp|location=Sequence derived from alignment at sc0000455:264399..264952 (Clytia hemisphaerica)
CCAATAAATTCAAAGATCGTATCAAAAAGGGTAAATGCTGTTTCGACCac
cgttttattttgttcaaaatgtttttcaagTAGAGATATTTGCCTTTTGA
ATTTTCCCCCGTTGTTTACGATTAATTGACGCATTTTGGTTTGGTAGTTG
AAAATCACTATTTCTTCTTGATCACCAAATAGGAAAGCTGAGTCTATCAT
AGATTCTGTAAGGTCGTGAGTGAACCAGATAAAATTTGTATAAAAATAAA
TGTTTACAGTTTTCACAAACTTTATTTGATCATGAGGATTGCCAAACAAG
ACCAAAACATTATGCGATAAATCTTGATGTAAAATGTCGACGGCTCTGGT
AAAGTTGGTGGAATTTTGAATGTCAATAGTATCTGTAAAATAGCAAGTAT
CAAAAAGGTCTTGTTGGCTTATCGTGTCAATAAACCTTCGATGCATTTTT
GAATAATATTCACTGGAATCTCTTTTCGGTCCTTTTAAAAGTAATAAACC
GAAACGCTTCCATCTGAAGATTTCCATGTGTTTAGCAAAAGTGTTCGATT
CTAG

Coding sequence (CDS) from alignment at sc0000455:264399..264952

>TCONS_00023532 ID=TCONS_00023532|Name=TCONS_00023532|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at sc0000455:264399..264952 (Clytia hemisphaerica)
AATAAATTCAAAGATCGTATCAAAAAGGGTAAATGCTGTTTCGACCaccg
ttttattttgttcaaaatgtttttcaagTAGAGATATTTGCCTTTTGAAT
TTTCCCCCGTTGTTTACGATTAATTGACGCATTTTGGTTTGGTAGTTGAA
AATCACTATTTCTTCTTGATCACCAAATAGGAAAGCTGAGTCTATCATAG
ATTCTGTAAGGTCGTGAGTGAACCAGATAAAATTTGTATAAAAATAAATG
TTTACAGTTTTCACAAACTTTATTTGATCATGAGGATTGCCAAACAAGAC
CAAAACATTATGCGATAAATCTTGATGTAAAATGTCGACGGCTCTGGTAA
AGTTGGTGGAATTTTGAATGTCAATAGTATCTGTAAAATAGCAAGTATCA
AAAAGGTCTTGTTGGCTTATCGTGTCAATAAACCTTCGATGCATTTTTGA
ATAATATTCACTGGAATCTCTTTTCGGTCCTTTTAAAAGTAATAAACCGA
AACGCTTCCATCTGAAGATTTCCATGTGTTTAGCAAAAGTGTTCGATTCT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013229XLOC_013229Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023532-exon-sc0000455-1491911889:264399..264952TCONS_00023532-exon-sc0000455-1491911889:264399..264952Clytia hemisphaericaexon
TCONS_00023532-exon-sc0000455-1510915933:264399..264952TCONS_00023532-exon-sc0000455-1510915933:264399..264952Clytia hemisphaericaexon
TCONS_00023532-exon-sc0000455-1575043694:264399..264952TCONS_00023532-exon-sc0000455-1575043694:264399..264952Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023532-proteinTCONS_00023532-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000455supercontigsc0000455:264399..264952 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.205668	0.200559	0.465736	0.227825	0.277355	0.328754	0.396628	0.247546	0	0	0	0.0684869	0	0.0710254	0.23357	0.125328	0.385986	0.158249	0	0.11439	0.994258	1.45489	0.353722	0.964755	0.552042	1.18244	0.141006	0	0	0.116288
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028082Peripla_BP_I
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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