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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023432 ID=TCONS_00023432|Name=TCONS_00023432|organism=Clytia hemisphaerica|type=transcript|length=1337bp
CAAGATTTAAGGTTATCAAACATAAAAATTCTCAGTTTTCTCCgacacta
attttgagattggaccttttgcCTTGATGGCAGCGATATATTACCTGCAA
TTcaattttgtagaggtctgtgattcagactaaccaaaactatcaaaaca
aaacattcataTTTAAATTCCTACCTATTCATActaataatattttcaat
ttgtttttagTTCATTATCAATCATATTAGTCCACATGTTTTGTAAGAAC
AACATGTAAACACGTAAAATAGGTCCCAAAAAACTATGAACCCAAAACTC
CAGTACTGAATTAGCAGGTGAAGCCCCTGCTGATAATGCATTCATGAAAT
AACCATCAGATCCAAATCCAATCATGAATTTACGTTTCACAATTCCATCT
TTTATAATTTTGGCAACATCTTCGACTTCCCAGAGACCAGCTTGCTCGGA
TATGGCTTGACACAATTTTGGTTTTTGCTCCATTTCTTTGTCAAATCCTG
GTGTTTTGGTATCTGGTGGAAAAGCAAGGCTGACACCGATATCGTAAGGA
CGTAACTCGTGATACAGGACCTCAGCAAAACCTCGGATAGCATATTTAGA
ACCAGAATATCCAGTGAACCCATAGATACCTAATTGTCCGCCAACAGAAG
ACAAAAACACGATCTGTCCTTGCTTTTTTTCAATCATAGATGGAACAATA
GCATGTGTTGTGTGTACAGCACTCAAATAATTAGCTTTAATCATATCCTC
AAAAACATTGGTATCCAGATTCTCAAATTCACCAGGGACTGAATATCCAG
CACAATTTACCAATAAATCAACACCTCCAAGCCGTTTCATGCGGTTGGCA
ATTTCAGCTCCATCAGAAGACAAATCCAGAGATAAACAAGAGATCACTTG
GTCATCAGTAGAAAGCATTTCTTTCAGCTCAGCAACTTTTGCTTTCAATC
TTCCTTCGTTTCTGGCGATGATGACCACCTTAGAGCATTCAGCCTCTACA
CACAACTTAGCCAATTCAAACCCGATACCACTGGATCCACCAGTAATAAC
AACACGTTTTCCAACCAATTTAAATTTTGGTGTCTTAGGTTTCATATTAT
TCACAATAACATAAGAAAGATAAATCAACCAGTAAAAGACACAAACAGCA
AACATAAACATCCCTTGCACCAAAGGCACTTTCTGGTACAACATGTAACC
AGCTAGAAATATGAATGCCACAATATGCATGATGACACGAGCAAATGTTA
GCTGTGTTTGCGccattcttaactttttttctgaatcttcttttgttttg
ttcaattttcttgtttttattcgTTACGATTctctat Run BLAST on NCBI protein sequence of TCONS_00023432-protein >TCONS_00023432-protein ID=TCONS_00023432-protein|Name=TCONS_00023432-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
MAQTQLTFARVIMHIVAFIFLAGYMLYQKVPLVQGMFMFAVCVFYWLIYL
SYVIVNNMKPKTPKFKLVGKRVVITGGSSGIGFELAKLCVEAECSKVVII
ARNEGRLKAKVAELKEMLSTDDQVISCLSLDLSSDGAEIANRMKRLGGVD
LLVNCAGYSVPGEFENLDTNVFEDMIKANYLSAVHTTHAIVPSMIEKKQG
QIVFLSSVGGQLGIYGFTGYSGSKYAIRGFAEVLYHELRPYDIGVSLAFP
PDTKTPGFDKEMEQKPKLCQAISEQAGLWEVEDVAKIIKDGIVKRKFMIG
FGSDGYFMNALSAGASPANSVLEFWVHSFLGPILRVYMLFLQNMWTNMID
NELKTN Run BLAST on NCBI transcript from alignment at sc0000453:170254..171590 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023432 ID=TCONS_00023432|Name=TCONS_00023432|organism=Clytia hemisphaerica|type=transcript|length=1337bp|location=Sequence derived from alignment at sc0000453:170254..171590 (Clytia hemisphaerica)
atagagAATCGTAAcgaataaaaacaagaaaattgaacaaaacaaaagaa
gattcagaaaaaaagttaagaatggCGCAAACACAGCTAACATTTGCTCG
TGTCATCATGCATATTGTGGCATTCATATTTCTAGCTGGTTACATGTTGT
ACCAGAAAGTGCCTTTGGTGCAAGGGATGTTTATGTTTGCTGTTTGTGTC
TTTTACTGGTTGATTTATCTTTCTTATGTTATTGTGAATAATATGAAACC
TAAGACACCAAAATTTAAATTGGTTGGAAAACGTGTTGTTATTACTGGTG
GATCCAGTGGTATCGGGTTTGAATTGGCTAAGTTGTGTGTAGAGGCTGAA
TGCTCTAAGGTGGTCATCATCGCCAGAAACGAAGGAAGATTGAAAGCAAA
AGTTGCTGAGCTGAAAGAAATGCTTTCTACTGATGACCAAGTGATCTCTT
GTTTATCTCTGGATTTGTCTTCTGATGGAGCTGAAATTGCCAACCGCATG
AAACGGCTTGGAGGTGTTGATTTATTGGTAAATTGTGCTGGATATTCAGT
CCCTGGTGAATTTGAGAATCTGGATACCAATGTTTTTGAGGATATGATTA
AAGCTAATTATTTGAGTGCTGTACACACAACACATGCTATTGTTCCATCT
ATGATTGAAAAAAAGCAAGGACAGATCGTGTTTTTGTCTTCTGTTGGCGG
ACAATTAGGTATCTATGGGTTCACTGGATATTCTGGTTCTAAATATGCTA
TCCGAGGTTTTGCTGAGGTCCTGTATCACGAGTTACGTCCTTACGATATC
GGTGTCAGCCTTGCTTTTCCACCAGATACCAAAACACCAGGATTTGACAA
AGAAATGGAGCAAAAACCAAAATTGTGTCAAGCCATATCCGAGCAAGCTG
GTCTCTGGGAAGTCGAAGATGTTGCCAAAATTATAAAAGATGGAATTGTG
AAACGTAAATTCATGATTGGATTTGGATCTGATGGTTATTTCATGAATGC
ATTATCAGCAGGGGCTTCACCTGCTAATTCAGTACTGGAGTTTTGGGTTC
ATAGTTTTTTGGGACCTATTTTACGTGTTTACATGTTGTTCTTACAAAAC
ATGTGGACTAATATGATTGATAATGAActaaaaacaaattgaaaatatta
ttagTATGAATAGGTAGGAATTTAAAtatgaatgttttgttttgatagtt
ttggttagtctgaatcacagacctctacaaaattgAATTGCAGGTAATAT
ATCGCTGCCATCAAGgcaaaaggtccaatctcaaaattagtgtcGGAGAA
AACTGAGAATTTTTATGTTTGATAACCTTAAATCTTG Coding sequence (CDS) from alignment at sc0000453:170254..171590 >TCONS_00023432 ID=TCONS_00023432|Name=TCONS_00023432|organism=Clytia hemisphaerica|type=CDS|length=1071bp|location=Sequence derived from alignment at sc0000453:170254..171590 (Clytia hemisphaerica)
atggCGCAAACACAGCTAACATTTGCTCGTGTCATCATGCATATTGTGGC
ATTCATATTTCTAGCTGGTTACATGTTGTACCAGAAAGTGCCTTTGGTGC
AAGGGATGTTTATGTTTGCTGTTTGTGTCTTTTACTGGTTGATTTATCTT
TCTTATGTTATTGTGAATAATATGAAACCTAAGACACCAAAATTTAAATT
GGTTGGAAAACGTGTTGTTATTACTGGTGGATCCAGTGGTATCGGGTTTG
AATTGGCTAAGTTGTGTGTAGAGGCTGAATGCTCTAAGGTGGTCATCATC
GCCAGAAACGAAGGAAGATTGAAAGCAAAAGTTGCTGAGCTGAAAGAAAT
GCTTTCTACTGATGACCAAGTGATCTCTTGTTTATCTCTGGATTTGTCTT
CTGATGGAGCTGAAATTGCCAACCGCATGAAACGGCTTGGAGGTGTTGAT
TTATTGGTAAATTGTGCTGGATATTCAGTCCCTGGTGAATTTGAGAATCT
GGATACCAATGTTTTTGAGGATATGATTAAAGCTAATTATTTGAGTGCTG
TACACACAACACATGCTATTGTTCCATCTATGATTGAAAAAAAGCAAGGA
CAGATCGTGTTTTTGTCTTCTGTTGGCGGACAATTAGGTATCTATGGGTT
CACTGGATATTCTGGTTCTAAATATGCTATCCGAGGTTTTGCTGAGGTCC
TGTATCACGAGTTACGTCCTTACGATATCGGTGTCAGCCTTGCTTTTCCA
CCAGATACCAAAACACCAGGATTTGACAAAGAAATGGAGCAAAAACCAAA
ATTGTGTCAAGCCATATCCGAGCAAGCTGGTCTCTGGGAAGTCGAAGATG
TTGCCAAAATTATAAAAGATGGAATTGTGAAACGTAAATTCATGATTGGA
TTTGGATCTGATGGTTATTTCATGAATGCATTATCAGCAGGGGCTTCACC
TGCTAATTCAGTACTGGAGTTTTGGGTTCATAGTTTTTTGGGACCTATTT
TACGTGTTTACATGTTGTTCTTACAAAACATGTGGACTAATATGATTGAT
AATGAActaaaaacaaattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023432-exon-sc0000453-1491911889:170254..171590 | TCONS_00023432-exon-sc0000453-1491911889:170254..171590 | Clytia hemisphaerica | exon |
| TCONS_00023432-exon-sc0000453-1510915933:170254..171590 | TCONS_00023432-exon-sc0000453-1510915933:170254..171590 | Clytia hemisphaerica | exon |
| TCONS_00023432-exon-sc0000453-1575043694:170254..171590 | TCONS_00023432-exon-sc0000453-1575043694:170254..171590 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000453 | supercontig | sc0000453:170254..171590 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00023432 vs. Swiss-Prot (Human)
Match: KDSR (3-ketodihydrosphingosine reductase OS=Homo sapiens GN=KDSR PE=1 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 1.427e-70 Identity = 123/289 (42.56%), Postives = 181/289 (62.63%), Query Frame = -3
Query: 247 TPK-FKLVGKRVVITGGSSGIGFELAKLCVEAECSK----VVIIARNEGRLKAKVAELKEMLSTDDQVISCLSLDLSSDGAEIANRMK----RLGGVDLLVNCAGYSVPGEFENLDTNVFEDMIKANYLSAVHTTHAIVPSMIEKKQGQIVFLSSVGGQLGIYGFTGYSGSKYAIRGFAEVLYHELRPYDIGVSLAFPPDTKTPGFDKEMEQKPKLCQAISEQAGLWEVEDVAK-IIKDGIVKRKFMIGFGSDGYFMNALSAGASPANSVLEFWVHSFLGPILRVYMLF 1083
+PK L G VV+TGGSSGIG C+ EC K + ++ARNE +L E++ D QV+ C+S+D+S D ++ N +K +LG VD+LVNCAG +V G+FE+L+ + FE ++ NYL +V+ + A++ +M E++ G+IVF+SS GQLG++GFT YS SK+AIRG AE L E++PY++ +++A+PPDT TPGF +E KP + ISE + + E VAK I+KD I + F GSDGY ++AL+ G +P S+ E + R LF
Sbjct: 24 SPKPLALPGAHVVVTGGSSGIG-----KCIAIECYKQGAFITLVARNEDKLLQAKKEIEMHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGMAVSGKFEDLEVSTFERLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPDTDTPGFAEENRTKPLETRLISETTSVCKPEQVAKQIVKDAI-QGNFNSSLGSDGYMLSALTCGMAPVTSITEGLQQVVTMGLFRTIALF 306
The following BLAST results are available for this feature:
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