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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023366 ID=TCONS_00023366|Name=TCONS_00023366|organism=Clytia hemisphaerica|type=transcript|length=2103bp
GAGTAGTTTTGATAACTTAGGATGTCTTTTACAATAATTGGTTCTATATA
ATCCACATCACTTGGAATAAAGTTTAAGTTTCTTTTGACTGACATATTTC
TTTCGGTTGTATCATTTATCTTAAAATGTGCTTGACACATATAGATAAAT
TGAAGGAAAAAaggggaaagatttttttggatgaattcaaaaagttaaaa
atccaAGAAAGGGGAAGCCTTAATTTTTCAcccaagaaaaaaatgaagaa
tctgAAAATATAATTGAAATCAACTAAGTTTAGAAgtgtaattttgaaac
tttttgtcaaaaaatctttatttattaTCCATCAAATTCTTTCTCCTAAC
CCACAGTAATAGGCTCTTGGCCTAAACCACAATCAACTATTCCGTCTAAA
TTGAAATGATAAAGCTCAATAATTTTAGCAAGACACTTTTCGTAATTTCT
CACGAAAACTGTTTCTCTCCCCACTTAGTCAATGATATATTTCTCTTTAC
CAGGTTCTTTTGGCTTATTCAATGTCAATGtcactttttcttttcaaact
tcATTGTTGCCTCGTTAAAGAAAAGATTCTTTAGTGTTATAGCACCATCT
CTCGCTGTCTCCTTTTTTTGCACATAACgaagaaatattttcatgttGAA
TCAAATCCCTCCATATGGTGTAGGTCATTGTCATAACTTTTATATCTTTG
ACAAGAATTGGTTACATTATTTCACAATCCACACATAGATTATCaaacat
tgaaatttaaaaaatactagCCTTTAGTACTGCCTTAATCGAGAAGGGCT
AATACAATGAGCCTTTAGCCGGTATGTTAAATGGTTTTTGGACTTATTAT
CTGTGATTTGAATTTCGAGCCTCTTTAGTACTTGTATTCCATATGTTGTT
GTCGcttgttgtttttattgctgAACATGTTGGCGATTcgattttgaact
ttttcattACTGCGGAGTAAGCTAACAACTCTTTTACATACAGTTGTCCA
GGTAATGTTCGAATATGTCTTTGAAAACTTTCATATACTTTGCCCCAAAA
TATACTAGCCTTTGGTACTGTCTTAATCGAGAAGAGCTAATATAATGCGC
ATTTAGCCGGTATGTTAAATAGCTTTGGacttattggacctacctcggag
gtcctttgaATTAACCTATGTTCGTttttccgtccgtccgttcgtctgtt
accagctttttacttcattagtttttttctgattcatTGCATAGTTATGG
GAAATGACAGTACCCAAAAGTGACGGAGACCGGTTTTTGAAAaccatatt
ttgggtaaatttaggcctaaaactgcctaaaaatagagttttttggattt
ttttttttttcataaagatAGAAGGCAAGGTTCCTTCGGGGGCTTTCAAA
GGTGAAAAACCAGCCCTTATCGTCTGCACATACTCAGCACCCATTTTCGC
TAAGTACCCCCTCCACTCGGAACTCCTGGGTTTCATTATTTTGCTCATCA
CTAATTATTTCATAATCAATTAATTACAGCCAACTTATCCTTCTTCCTTG
TTCAATGCCATGTTTAGAGAAGATTCGAGTCTAAAATTTCATAATTGTTC
ATCGTCCACATAATATGGGACTTCCGGTAAAACCAGCCTTTTCCAGAAGA
CAAAAGCTTTTATGTTGGATTTTCTTTCATCATTTCGGGGTAAAGGGATT
ATTTTCTGTCTTTAAATTTGATCAATTGACAGCGAGATGCGAGGTGCGAT
GGCAACCAATGATTAGAAGAATCTCCAAGACCTTTAAAACGGAAATCAAG
GGCAATTAACTACAATTCTTCGCGGTAATCTTTTTGTAAAACCAATGACC
AATCTTTCACTAAATCTGAACGAGAATGAAATCGTAAAGATTAATGAATA
CTACTTTTTTGCTTGGTTTGAAAAAACGACCGATATGTAATTTAACCAAG
TTTCGGTTTATTTTCCCAACGCGATACCAGGCCTCATCTTCAGCTCCGTC
ATTTCCCCTTTTAGTGCAAGGTTTTGGAATTGTTCCAGTTTCTTGTGTTT
TGAACTgcattcaaagtttaaaatgttGTGAATCAACAAGACGTTTCTTC
AGG Run BLAST on NCBI transcript from alignment at sc0000452:197990..201135- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023366 ID=TCONS_00023366|Name=TCONS_00023366|organism=Clytia hemisphaerica|type=transcript|length=3146bp|location=Sequence derived from alignment at sc0000452:197990..201135- (Clytia hemisphaerica)
GAGTAGTTTTGATAACTTAGGATGTCTTTTACAATAATTGGTTCTATATA
ATCCACATCACTTGGAANTGATAACTTAGGATGTCTTTTACAATAATTGG
TTCTATATAATCCACATCACTTGGAATAAAGTTTAAGTTTCTTTTGACTG
ACATATTTCTTTCGGTCGTATAATTTTTCTTAAAATGTCCTTGACACATA
TAGATAAATTGAAGGAAAAAAGGGGAAAGATTTGTTGGATGAATTCGAAA
AGTTAAAAATCCAAGAAAGGGGAAGCTTTAATTTTTCACCAAAGAAAGAA
ATGAAGAATCTGAAAATATAATAGAAATCAACTAAGTTTAAAAGTGTAAT
TTTGAAACTTTTTGTCAAAAAATCTTTATTTATTATCCATCAAATTCTTA
TTTCTCATAACCCACAGTAATAGGCTCTTGTCNAATTCAAAAAGTTAAAA
ATCCAAGAAAGGGGAAGCTTTAATTTTTCACCCAAGAAAGAAATGAAGAA
TCTGAAAATATAATTGAAATCAACCAAGTTTAGAAGTGTAATTTTGAAAC
TTTTTGTCAAAAAATCTTTATTTATAATCCATCAAATTCTTCTTTCTCGT
AACCCACAGTAATAGGCTGTTGGCCTAAACCACAATCAACTATTCCGTCT
AAATTGAAATGATAAAGCTCAATAATTTTAGCAAAACATTTCTCGTAATT
TCTCACGAAAACTGTTTCTCTCCCCACTTAGTCAATGATATATTTCTCTT
TACCAGGTTCTTTTGGCTTATTCAATGTCAATGTCACTTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTCTTTTCAAACTTCATTGTTGCTTTGTTAAAGAAAAAATTA
TTTAGTGTTATAGCACCATCTCTCGCTGTCTCCTTTTTTTTGCACATAAC
GAAGAAATATTTTCCTGTCGCATCAAATTCTTCCATATGGTGTGAGTAGT
TTTGATAACTTAGGATGTCTTTTACAATAATTGGTTTTATATAGTCCACA
TCACTTGGAATAAAGTTTAAGTTTCTTTTGACTGACATATTTCTTTCGGT
TGTATCATTTATCTTAAAATGTGCTTGACACATATAGATAAATTGAAGGA
AAAAAGGGGAAAGATTTTTTTGGATGAATTCAAAAAGTTAAAAATCCAAG
AAAGGGGAAGCCTTAATTTTTCACCCAAGAAAAAAATGAAGAATCTGAAA
ATATAATTGAAATCAACTAAGTTTAGAAGTGTAATTTTGAAACTTTTTGT
CAAAAAATCTTTATTTATTATCCATCAAATTCTTTCTCCTAACCCACAGT
AATAGGCTCTTGGCCTAAACCACAATCAACTATTCCGTCTAAATTGAAAT
GATAAAGCTCAATAATTTTAGCAAGACACTTTTCGTAATTTCTCACGAAA
ACTGTTTCTCTCCCCACTTAGTCAATGATATATTTCTCTTTACCAGGTTC
TTTTGGCTTATTCAATGTCAATGTCACTTTTTCTTTTCAAACTTCATTGT
TGCCTCGTTAAAGAAAAGATTCTTTAGTGTTATAGCACCATCTCTCGCTG
TCTCCTTTTTTTGCACATAACGAAGAAATATTTTCATGTTGAATCAAATC
CCTCCATATGGTGTAGGTCATTGTCATAACTTTTATATCTTTGACAAGAA
TTGGTTACATTATTTCACAATCCACACATAGATTATCAAACATTGAAATT
TAAAAAATACTAGCCTTTAGTACTGCCTTAATCGAGAAGGGCTAATACAA
TGAGCCTTTAGCCGGTATGTTAAATGGTTTTTGGACTTATTATCTGTGAT
TTGAATTTCGAGCCTCTTTAGTACTTGTATTCCATATGTTGTTGTCGCTT
GTTGTTTTTATTGCTGAACATGTTGGCGATTCGATTTTGAACTTTTTCAT
TACTGCGGAGTAAGCTAACAACTCTTTTACATACAGTTGTCCAGGTAATG
TTCGAATATGTCTTTGAAAACTTTCATATACTTTGCCCCAAAATATACTA
GCCTTTGGTACTGTCTTAATCGAGAAGAGCTAATATAATGCGCATTTAGC
CGGTATGTTAAATAGCTTTGGACTTATTGGACCTACCTCGGAGGTCCTTT
GAATTAACCTATGTTCGTTTTTCCGTCCGTCCGTTCGTCTGTTACCAGCT
TTTTACTTCATTAGTTTTTTTCTGATTCATTGCATAGTTATGGGAAATGA
CAGTACCCAAAAGTGACGGAGACCGGTTTTTGAAAACCATATTTTGGGTA
AATTTAGGCCTAAAACTGCCTAAAAATAGAGTTTTTTGGATTTTTTTTTT
TTTCATAAAGATAGAAGGCAAGGTTCCTTCGGGGGCTTTCAAAGGTGAAA
AACCAGCCCTTATCGTCTGCACATACTCAGCACCCATTTTCGCTAAGTAC
CCCCTCCACTCGGAACTCCTGGGTTTCATTATTTTGCTCATCACTAATTA
TTTCATAATCAATTAATTACAGCCAACTTATCCTTCTTCCTTGTTCAATG
CCATGTTTAGAGAAGATTCGAGTCTAAAATTTCATAATTGTTCATCGTCC
ACATAATATGGGACTTCCGGTAAAACCAGCCTTTTCCAGAAGACAAAAGC
TTTTATGTTGGATTTTCTTTCATCATTTCGGGGTAAAGGGATTATTTTCT
GTCTTTAAATTTGATCAATTGACAGCGAGATGCGAGGTGCGATGGCAACC
AATGATTAGAAGAATCTCCAAGACCTTTAAAACGGAAATCAAGGGCAATT
AACTACAATTCTTCGCGGTAATCTTTTTGTAAAACCAATGACCAATCTTT
CACTAAATCTGAACGAGAATGAAATCGTAAAGATTAATGAATACTACTTT
TTTGCTTGGTTTGAAAAAACGACCGATATGTAATTTAACCAAGTTTCGGT
TTATTTTCCCAACGCGATACCAGGCCTCATCTTCAGCTCCGTCATTTCCC
CTTTTAGTGCAAGGTTTTGGAATTGTTCCAGTTTCTTGTGTTTTGAACTG
CATTCAAAGTTTAAAATGTTGTGAATCAACAAGACGTTTCTTCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023366-exon-sc0000452-1575043694:201080..201135 | TCONS_00023366-exon-sc0000452-1575043694:201080..201135 | Clytia hemisphaerica | exon |
| TCONS_00023366-exon-sc0000452-1575043694:197990..200036 | TCONS_00023366-exon-sc0000452-1575043694:197990..200036 | Clytia hemisphaerica | exon |
| TCONS_00023366-exon-sc0000452-1510915933:201080..201135 | TCONS_00023366-exon-sc0000452-1510915933:201080..201135 | Clytia hemisphaerica | exon |
| TCONS_00023366-exon-sc0000452-1510915933:197990..200036 | TCONS_00023366-exon-sc0000452-1510915933:197990..200036 | Clytia hemisphaerica | exon |
| TCONS_00023366-exon-sc0000452-1491911889:201080..201135 | TCONS_00023366-exon-sc0000452-1491911889:201080..201135 | Clytia hemisphaerica | exon |
| TCONS_00023366-exon-sc0000452-1491911889:197990..200036 | TCONS_00023366-exon-sc0000452-1491911889:197990..200036 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000452 | supercontig | sc0000452:197990..201135 - |
Blast
The following BLAST results are available for this feature:
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