|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023313 ID=TCONS_00023313|Name=TCONS_00023313|organism=Clytia hemisphaerica|type=transcript|length=1517bp
CGTCtctcaaaatttgttttctaGACTAGGCTCATTTAATCAAACCAATG
TGGAATTCTTTGGCCAAACTGCTGACACTCAATGTAGCGTTAACTGCTTG
TACGCTATCTTTTGCTCTAATTTTCGACACGTTAATCTTAAAGACTACTG
ACCTTCACAAAATCTTAATCGAAGGTGATACAGTTACAAACAGCTTGATA
CAAACTCTCATCTTTCTGTTGATGAAATGCCGCGTTTCATTGAAATAAAT
GGTGTCAtaacaaatttaaattttttgaattttgcaaaCGGCGAAGCAAA
CTACCTGATTAATGATTATCCTTTCCTTCGAATCCCttgacttttttgta
aattggatttcatctcaaaacaatttttttttctcggccatgtgtttcat
gacatatggccatgttttctttccacgggcttatttttattcgtatgggt
tgtgtgtttattccattttaactctaactataattattttcatcttatCT
GTCTtcaggtgaaggagcttgatGGATGACTTTTAACTACCAactggctg
aatcagcagagCAGTGCGTTGGTGGTCTTTGGTGGGTGAACatgcacaac
aaagaagcagcataaaaccaaaatatacaaagcgttatgactgtatgaac
agattgtgattgatggagaataatataaaatggtcctgctgaatataaat
tgtgccagttcATGTTTATTTCGTGCAATTGCAATGTTTACGAGACAAAA
CTCAAAGAGAGGAAAAACCTTTTAGAGGATTCGACTGACTAGAAAGCAGA
CTCAAAATGATAATTCATGGTTACTATTTTCGTCATTGAAGATTTCTTCA
ATATTTTTTCAATATAACGGAATCATTTTGATTTGGTTTGATTGATTTAA
TAGCTTGCTGGCTTTCGAGAGATTCTTGTTCATTGGAGCTTGACCAATTA
CAATAAGACAAATTTATATTTGTACGATAAAGTGATAACAAAAGCATGAT
TGATGGCTTTAGCCCAAAAGACAACTTAAATGATAAAAGTACCTATGTGA
CTTTTGATGCTAGCTCGAATATATTTTCAAACAAGATCTTTCACCATAAA
GTCTTTTTAATATAATAATGTACTGgcaaatcaacttttattttcataaa
caaTTGACGTGAGATGGTAGATACTGCTTGTTATTATTACTGTGAAGTAG
GGTAACTTGCACCAGTGAAGGCTAGCATactggtagagtagagctgcata
gatcatttgttttgaaattttgctgctttggttggtcagCCATTTGATGG
ATATGCAAGTTTCcatccactgatgcaagttacccgacttcacggtatag
gttctaatggctgaaaagctcaagatcatctttcaaactacacactattt
tcttttaaactttgaaggaaaatatatactgtaatatattttttgaattg
ttgataaatttgtctttgtaaaagttttatagagagctaaataattgttt
caaaaacaaaaagacgg Run BLAST on NCBI transcript from alignment at sc0000450:143706..145222- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023313 ID=TCONS_00023313|Name=TCONS_00023313|organism=Clytia hemisphaerica|type=transcript|length=1517bp|location=Sequence derived from alignment at sc0000450:143706..145222- (Clytia hemisphaerica)
CGTCTCTCAAAATTTGTTTTCTAGACTAGGCTCATTTAATCAAACCAATG
TGGAATTCTTTGGCCAAACTGCTGACACTCAATGTAGCGTTAACTGCTTG
TACGCTATCTTTTGCTCTAATTTTCGACACGTTAATCTTAAAGACTACTG
ACCTTCACAAAATCTTAATCGAAGGTGATACAGTTACAAACAGCTTGATA
CAAACTCTCATCTTTCTGTTGATGAAATGCCGCGTTTCATTGAAATAAAT
GGTGTCATAACAAATTTAAATTTTTTGAATTTTGCAAACGGCGAAGCAAA
CTACCTGATTAATGATTATCCTTTCCTTCGAATCCCTTGACTTTTTTGTA
AATTGGATTTCATCTCAAAACAATTTTTTTTTCTCGGCCATGTGTTTCAT
GACATATGGCCATGTTTTCTTTCCACGGGCTTATTTTTATTCGTATGGGT
TGTGTGTTTATTCCATTTTAACTCTAACTATAATTATTTTCATCTTATCT
GTCTTCAGGTGAAGGAGCTTGATGGATGACTTTTAACTACCAACTGGCTG
AATCAGCAGAGCAGTGCGTTGGTGGTCTTTGGTGGGTGAACATGCACAAC
AAAGAAGCAGCATAAAACCAAAATATACAAAGCGTTATGACTGTATGAAC
AGATTGTGATTGATGGAGAATAATATAAAATGGTCCTGCTGAATATAAAT
TGTGCCAGTTCATGTTTATTTCGTGCAATTGCAATGTTTACGAGACAAAA
CTCAAAGAGAGGAAAAACCTTTTAGAGGATTCGACTGACTAGAAAGCAGA
CTCAAAATGATAATTCATGGTTACTATTTTCGTCATTGAAGATTTCTTCA
ATATTTTTTCAATATAACGGAATCATTTTGATTTGGTTTGATTGATTTAA
TAGCTTGCTGGCTTTCGAGAGATTCTTGTTCATTGGAGCTTGACCAATTA
CAATAAGACAAATTTATATTTGTACGATAAAGTGATAACAAAAGCATGAT
TGATGGCTTTAGCCCAAAAGACAACTTAAATGATAAAAGTACCTATGTGA
CTTTTGATGCTAGCTCGAATATATTTTCAAACAAGATCTTTCACCATAAA
GTCTTTTTAATATAATAATGTACTGGCAAATCAACTTTTATTTTCATAAA
CAATTGACGTGAGATGGTAGATACTGCTTGTTATTATTACTGTGAAGTAG
GGTAACTTGCACCAGTGAAGGCTAGCATACTGGTAGAGTAGAGCTGCATA
GATCATTTGTTTTGAAATTTTGCTGCTTTGGTTGGTCAGCCATTTGATGG
ATATGCAAGTTTCCATCCACTGATGCAAGTTACCCGACTTCACGGTATAG
GTTCTAATGGCTGAAAAGCTCAAGATCATCTTTCAAACTACACACTATTT
TCTTTTAAACTTTGAAGGAAAATATATACTGTAATATATTTTTTGAATTG
TTGATAAATTTGTCTTTGTAAAAGTTTTATAGAGAGCTAAATAATTGTTT
CAAAAACAAAAAGACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023313-exon-sc0000450-1575043694:143706..145222 | TCONS_00023313-exon-sc0000450-1575043694:143706..145222 | Clytia hemisphaerica | exon |
| TCONS_00023313-exon-sc0000450-1510915933:143706..145222 | TCONS_00023313-exon-sc0000450-1510915933:143706..145222 | Clytia hemisphaerica | exon |
| TCONS_00023313-exon-sc0000450-1491911889:143706..145222 | TCONS_00023313-exon-sc0000450-1491911889:143706..145222 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000450 | supercontig | sc0000450:143706..145222 - |
Blast
The following BLAST results are available for this feature:
|
