TCONS_00023247 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023247
Unique NameTCONS_00023247
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023247 ID=TCONS_00023247|Name=TCONS_00023247|organism=Clytia hemisphaerica|type=transcript|length=246bp
GAATACCGTAAAAGGAGGATATCATTcgatgtaaaaaaaaatcttcactA
AAATATGTACGCTAAACACAATAAATCTTACAcagaaaagttttcttttg
gaagtaaaataaaatagttatttcataaaaaatagcGATAGAAAATATGA
AGCGATAGCAGTCAAGGTGCTTTTAGAGCTTGAAAAATCCACAGCTTATT
TGAAACTAACACTGTATGAagacaaataaaattatttcaaagtaTG
Run BLAST on NCBI

transcript from alignment at sc0000447:264402..264647

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023247 ID=TCONS_00023247|Name=TCONS_00023247|organism=Clytia hemisphaerica|type=transcript|length=246bp|location=Sequence derived from alignment at sc0000447:264402..264647 (Clytia hemisphaerica)
CAtactttgaaataattttatttgtctTCATACAGTGTTAGTTTCAAATA
AGCTGTGGATTTTTCAAGCTCTAAAAGCACCTTGACTGCTATCGCTTCAT
ATTTTCTATCgctattttttatgaaataactattttattttacttccaaa
agaaaacttttctgTGTAAGATTTATTGTGTTTAGCGTACATATTTTagt
gaagatttttttttacatcgAATGATATCCTCCTTTTACGGTATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013074XLOC_013074Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023247-exon-sc0000447-1491911889:264402..264647TCONS_00023247-exon-sc0000447-1491911889:264402..264647Clytia hemisphaericaexon
TCONS_00023247-exon-sc0000447-1510915933:264402..264647TCONS_00023247-exon-sc0000447-1510915933:264402..264647Clytia hemisphaericaexon
TCONS_00023247-exon-sc0000447-1575043694:264402..264647TCONS_00023247-exon-sc0000447-1575043694:264402..264647Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000447supercontigsc0000447:264402..264647 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.816926	0.796631	0	2.7148	4.40668	6.09388	7.35201	0	4.81885	10.2324	6.62124	1.6322	0.543312	1.12847	3.24714	3.48468	7.97242	6.28575	0	0	4.7391	5.77892	0.936671	0.85157	0	0	2.24034	1.19547	0.906724	0.923808
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023247 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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