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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023192 ID=TCONS_00023192|Name=TCONS_00023192|organism=Clytia hemisphaerica|type=transcript|length=3846bpRun BLAST on NCBI protein sequence of TCONS_00023192-protein >TCONS_00023192-protein ID=TCONS_00023192-protein|Name=TCONS_00023192-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1151bp MAGMNDLKDEMDEEKLQLLDNVKKECKKLMEEAVTRKFIHVDSSSVTSLCRun BLAST on NCBI transcript from alignment at sc0000446:223305..258409- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023192 ID=TCONS_00023192|Name=TCONS_00023192|organism=Clytia hemisphaerica|type=transcript|length=35105bp|location=Sequence derived from alignment at sc0000446:223305..258409- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000446:223305..258409- >TCONS_00023192 ID=TCONS_00023192|Name=TCONS_00023192|organism=Clytia hemisphaerica|type=CDS|length=72576bp|location=Sequence derived from alignment at sc0000446:223305..258409- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00023192 vs. Swiss-Prot (Human)
Match: SGSM2 (Small G protein signaling modulator 2 OS=Homo sapiens GN=SGSM2 PE=1 SV=4) HSP 1 Score: 411.379 bits (1056), Expect = 1.219e-123 Identity = 249/651 (38.25%), Postives = 365/651 (56.07%), Query Frame = 2
Query: 332 DEEKLQLLDNVKKECKKLMEEAVTRKFIHVDSSSVTSLCSAVEACLLHRLKKRIGGLLPASDCSADLLHKITRLSPDAQSINILTNYLHHVQDTKNTFPSLNEKTGIELKSPEKKRLNGYTTTGFSKKYLWIRIALLEKVLTNIVKTLIANWREFYEIDALLADQVHGPSLVWLLDGPDSLDYSKMKTPDNSWSDPSAQELVQRHRIYSSPSLSHKSVTPHRRRLFTTSS--AKLNSSIPGVPMQAREHVGSLHQNGESQLLFGKNNVKLTVTGSPSSVQGYLSLHKSIDSLLLKWTPNPMLHDDTISVQSEKSHFWNQAITVDLIDVVYLHCHSSGEQGGNVVLITQDGVQLPPLSFPSGNSLLSFLTCLEQGLGPDGRLDPPLFHKSSSSVTWPRLKKNILPDRLIHAFQSQDSKKGDSLGGTGPSQDFVFRLIFTSPTSGIDKSELRKLISTDNAAAATKLINSSVNSWKAKEI---GAKSSLVPKMHTPRVRLSRSFSVPSKIALNLACEKMKYQIISRAFHGWVASYRHLKTVRTHLASLVLHXXXXXXXXXXXXVHQGLTHIIW-KNMRAKGLSRNKELIKLYVYYGGIEPSIRKEVWPYLLDSYPFTSDTNHIKDLEKANRDNYNHILEECKGIERILQEKEKD 2266
D K +LL NVKKE K++MEEAVTRKF+H DSS + +LC AVEACLLH+L++R G L SD A L K+ + P A I L Q + PS + + + + + K++W+R AL+EKVL +V+ L N ++YE +ALLAD V GP L LL GP +L+Y+K+KT D+ W+DPSA ELVQRHRI P+ + +P +R + ++S + ARE V SLHQN ++LL+GKN+V + +V GYLSLH+S +SL LKWTPN +++ + EKS +W+ A+ V VV +HCH + GG +VL++QDG+Q PPL FP G LLSFL+CLE GL P G+L+PPL+ + +P+L+K + +S D ++ GTG + D+VFR+I+ + ++ ++ + S+ +W + + G+ +P S +P ++ L L CE MK QI+SRAF+GW+A RHL TVRTHL++LV H D GLT +W K + K + EL++ VYYGGIE IRK+VWP+LL Y F ++ ++ Y +L E K E +++++E++
Sbjct: 6 DAVKEKLLWNVKKEVKQIMEEAVTRKFVHEDSSHIIALCGAVEACLLHQLRRRAAGFL-RSDKMAALFTKVGKTCPVAGEICHKVQELQ--QQAEGRKPSGVSQEALRRQGSASGKAPALSPQAL--KHVWVRTALIEKVLDKVVQYLAENCSKYYEKEALLADPVFGPILASLLVGPCALEYTKLKTADHYWTDPSADELVQRHRIRGPPT---RQDSPAKRPALGIRKRHSSGSASEDRLAACARECVESLHQNSRTRLLYGKNHVLVQPKEDMEAVPGYLSLHQSAESLTLKWTPNQLMNGTLGDSELEKSVYWDYALVVPFSQVVCIHCHQQ-KSGGTLVLVSQDGIQRPPLHFPQGGHLLSFLSCLENGLLPRGQLEPPLWTQQGKGKVFPKLRKR-------SSIRSVDMEE----MGTGRATDYVFRIIYPGHRHEHNAGDMIEM----------QGFGPSLPAWHLEPLCSQGSSCLSCSSSSSPHATPSHCSCIPDRLPLRLLCESMKRQIVSRAFYGWLAHCRHLSTVRTHLSALVHHSVIPPDRPPGASA--GLTKDVWSKYQKDKKNYKELELLR-QVYYGGIEHEIRKDVWPFLLGHYKFGMSKKEMEQVDAVVAARYQQVLAEWKACEVVVRQRERE 623 HSP 2 Score: 294.278 bits (752), Expect = 5.807e-83 Identity = 133/226 (58.85%), Postives = 170/226 (75.22%), Query Frame = 2
Query: 3014 GSLYSEDLLKDYALNIHRIDKDVLRCDRNHPYFMPEKNLGKLRNVIMCYVWEKLNIGYIQGMCDLCAPLLVIMDDEAKVFSCFMKLMDKMEANFPHGNQMNEHLANINSLIQILDPELHEILDTPDDNTIFFFCYRWFLLDFKRELQYEDIYLVWETIWAASSVATEQFNLFVALAMIELYREIIIDNRMDMTDIIKFFNEMAEQHDVKATLKLARNIVTKLQDII 3691
+ Y+ +LL ALN+HRIDKDV RCDRN+ YF P NL +LR+V+ YVWE L++GY+QGMCDL APLLV +D++ +SCF LM +M NFP+G M+ H AN+ SLIQILD EL E++ D T F+FCYRWFLLDFKREL YED++ VWE IWAA +++E F LF+ALA++E YREII DN MD TDIIKFFNE AE HD + L++AR++V K+Q +I
Sbjct: 779 AAAYTIELLDTVALNLHRIDKDVQRCDRNYWYFTP-PNLERLRDVMCSYVWEHLDVGYVQGMCDLLAPLLVTLDNDQLAYSCFSHLMKRMSQNFPNGGAMDTHFANMRSLIQILDSELFELMHQNGDYTHFYFCYRWFLLDFKRELLYEDVFAVWEVIWAARHISSEHFVLFIALALVEAYREIIRDNNMDFTDIIKFFNERAEHHDAQEILRIARDLVHKVQMLI 1003 The following BLAST results are available for this feature:
BLAST of TCONS_00023192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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