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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023155 ID=TCONS_00023155|Name=TCONS_00023155|organism=Clytia hemisphaerica|type=transcript|length=2737bp
ttttaGTGAACATGAAAGAATCTTGtgcaaaaataataatagtATTGTCT
GGAAAACGTAAATCTGGGAAAGATTATGTTGCAGATAACATAGTGAAGAA
GATCTCCCCAGAGAGATGCCATATCATGAGAGTAGCTTTACCtatcaaaa
aacatttctgTGAGAAATACAACATGGACTATAAAGAAATGATGACCTCA
TCAGAATATAAAGAATTAAGACGAGCGGAGATGATCCAATGGGGTGAAGA
ACAAAGGAATAAAGATACAGGAGTATTTTGCCGTACTGAGAAAAATTCAG
CAATTGATTCTGGGAAACCAGTTTGGATTCTAAGTGATGCACGCAGACCT
AGTGATGTTAATTATTTTAGGGAATATGCCAGAAGCCTTGGTGTAACATT
TTATGCTATTCGTGTATCTGCAGATATAGAAACAAGAGAGGAGCGTGGTT
GGAAGTTTACAAAGAATGTTGATGATGTAGATTCTGAATGTGCCCTTGAT
TCTTATGACAAATGGGACTTTTGCtttgaaaattcacaaaatgatAGTGT
TATTGAAAAGGTTGAGGAACTCACTACCAATATGAAACAAATTCTCTCTA
ACTGAGACCACACTTTCATACctttatatattttgatatatACATCACTG
TTTTAGTTTCTCGCTCCTTTCccaatttgatggagatttaatTCAATATA
ATGCAGTCCaattaattttgataaattgcACAAGACTGCTCAAAATATTT
ATATCATAATATTATACTGTAGcatatttttaatgattttgtatctattt
taaaacacttaaataatataaagataatagattttgcttgattttaattt
tcttataacACACAATTTATAATATCTAATCTCTATTTTTAGGATATAAA
GCAgcaaaatggtaaaatttgaaaattttgaaatctttgagAGCGAATCG
AAAGGAAAGGGTCTACGTGCAATAACACATATTGATGCTGGAGAGGAGAT
TTTACATGAAGAACCTCTAGTGTACACTTTGATGAATGCGAAATGTAGAG
GAGGAAGATGTGATTATTGTTTTAGTGAAGATAGGAAATTATTCAAATGC
TCAAAATGTAAATTTGTTTCATACTGTGGGCGTGAATGTCAATCTGGGGA
TTGGAAAATCCATAAATATGAATGTAAATGCTTGGTCAAGGTTGCACCAA
AACAACCACCTGATATCTGTCGTTTAGTATCACATCTATTGTTCAAATAT
TATACCTCAAACAAAAAGACTTCTGCCAATCCTTCAGAGATTGAAGCCTT
AACAGACAATCGTGGGAGAGTAACTAATTCACGGACAGGATTATACAAGA
CATCTTCTTTTCTTAACCATTCATGTGATCCCAACGTTGTTGCAATCTTC
AATGGCACCAAAATACACATCCGAACGATCAAGGAAGTGCAAGAAGGAGA
AGAGCTTTTTCTAAGCTACATCAACCTCTTAGCCACCACAAAACATCGAC
AGTCTGAACTAATGGATGGGTACATGTTTACATGTAGTTGCTCCAAATGT
AATGGTAATGGGTTTTCAGACTTGATGATGTTGAGTATGAAATGCCCACA
ATGCACCTGTCTGCAATCGCTTGATACACAATCAGAAAGATCGTGTGGAT
GTGACAAGAAGTGTGAAAGAAACAAATCAGCCATGTTGAAAGCTCTCGAT
TGTATGGATTCTTTAGAAGCACTTTATAACTCAATTAACGTCATCCCTAC
TCCAGACCAACACAAAAAGTTGGAACTGAAAATCTGTAAAGGAAGACAGC
TCTTGGGACATTGTAATATTGCATTACTACATGCTTATGAAGTGGGTATG
GACGGTTGTCTTGATTATTCGGACTGGAAAGGGGCTTTGGAGTATGGCAA
AAAGTTGGAGAAACTTTATCTCGTTTATCTGACGAAGAACCACCCGAGTA
TCGGTCTTCATTATTTTAAACAAGGAAAACTTGAGCTTCAGATGGAAAAT
CTTCGTGAAGGGATCAGTTATTTTGAAAAAGCCATGAAGATACTTTGTAT
TTCACACGGAGAGAAACATGAGCTTGTGGTGTTATTACAAGAAACTTTAC
AATCAGCTTTAATTGAGATAAACTGTGAACAGTTTGGTCACGTGGAAAAT
ATGATGAAGATGGAAGAACAATAATTTGCTGCATGAAATTCTGTTCCGTT
TAATGATCTTGTGGAATTTTTATTATTGATTGCTGCATGTTATGGTTCAA
GATTATCACAGGAAAGATGGTAAAAAGCAGCGAGTTCCTTTATTCTTTTG
TTCATGTTTGGGAACTGGTTTCTTTTAGTTAAAAAAACAACCAGTGCTAG
GAAGTGGCTATGGTTCCATCCTCACACTCTGGCCTGCACTTTGAACATTT
GCTGCTCGTCATCTCTTTGTATTGGGAACCAAAGACAGTCAACAGTcaac
cttttttttgaaatctttttatgACACACCTTACCTCATCATGCCGATTT
ATCAGATTTAGTTTTCATCATCATGCGGGACAAACAGTTAGCGGCGGACA
TGTGTACAGCCCTGCTGAAAATGCAAATGTTAAGCAAGCACGGCTCTGAC
AGTGATGATTGTCCGATACCAACTGCTTGATGCCTCTTTTGTTTGCATta
ttacttttgtttttattttatactcTTTGTACTTATGTTGATATTTTACT
GATCGAGCAAAATAAAGAACTGTTACATACTTCTATG Run BLAST on NCBI transcript from alignment at sc0000444:123455..126991+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023155 ID=TCONS_00023155|Name=TCONS_00023155|organism=Clytia hemisphaerica|type=transcript|length=3537bp|location=Sequence derived from alignment at sc0000444:123455..126991+ (Clytia hemisphaerica)
ttttaGTGAACATGAAAGAATCTTGtgcaaaaataataatagtATTGTCT
GGAAAACGTAAATCTGGGAAAGATTATGTTGCAGATAACATAGTGAAGAA
GATCTCCCCAGAGAGATGCCATATCATGAGAGTAGCTTTACCtatcaaaa
aacatttctgTGAGAAATACAACATGGACTATAAAGAAATGATGACCTCA
TCAGAATATAAAGAATTAAGACGAGCGGAGATGATCCAATGGGGTGAAGA
ACAAAGGAATAAAGATACAGGAGTATTTTGCCGTACTGAGAAAAATTCAG
CAATTGATTCTGGGAAACCAGTTTGGATTCTAAGTGATGCACGCAGACCT
AGTGATGTTAATTATTTTAGGGAATATGCCAGAAGCCTTGGTGTAACATT
TTATGCTATTCGTGTATCTGCAGATATAGAAACAAGAGAGGAGCGTGGTT
GGAAGTTTACAAAGAATGTTGATGATGTAGATTCTGAATGTGCCCTTGAT
TCTTATGACAAATGGGACTTTTGCtttgaaaattcacaaaatgatAGTGT
TATTGAAAAGGTTGAGGAACTCACTACCAATATGAAACAAATTCTCTCTA
ACTGAGACCACACTTTCATACctttatatattttgatatatACATCACTG
TTTTAGTTTCTCGCTCCTTTCccaatttgatggagatttaatTCAATATA
ATGCAGTCCaattaattttgataaattgcACAAGACTGCTCAAAATATTT
ATATCATAATATTATACTGTAGcatatttttaatgattttgtatctattt
taaaacacttaaataatataaagataatagattttgcttgattttaattt
tcttataacACACAATTTATAATATCTAATCTCTATTTTTAGGATATAAA
GCAgcaaaatggtaaaatttgaaaattttgaaatctttgagAGCGAATCG
AAAGGAAAGGGTCTACGTGCAATAACACATATTGATGCTGGAGAGGAGAT
TTTACATGAAGAACCTCTAGTGTACACTTTGATGAATGCGAAATGTAGAG
GAGGAAGATGTGATTATTGTTTTAGTGAAGATAGGAAATTATTCAAATGC
TCAAAATGTAAATTTGTTTCATACTGTGGGCGTGAATGTCAATCTGGGGA
TTGGAAAATCCATAAATATGAATGTAAATGCTTGGTCAAGGTTGCACCAA
AACAACCACCTGATATCTGTCGTTTAGTATCACATCTATTGTTCAAATAT
TATACCTCAAACAAAAAGACTTCTGCCAATCCTTCAGAGATTGAAGCCTT
AACAGACAATCGTGGGAGAGTAACTAATTCACGTAAAGAAGCATTTTTCA
CCTTTAGTGGTGTTTTGTTTGATTACCTCAAAGGATGCACTTTCACTGAT
GATGCTGATATCTATGGATTGCTTTGTAGAATCTCAAGCAACAGTTTCAC
AATCACTAATTCAGAGCTAAACTCCCTAGGTttgttttaatcattttttt
ctatgaaaaattttcaGCACCCCAAGCTTGTAGCTAAGACCATATTTTTA
CAGTTCATATGTTCTAAAAAATTCTCTTATAACTTGCACTGGGCTTAAGG
CACAAAACGGAAAGTTTATATGCTGAGTTATATAatgttttcaatttgtt
ttattattttctttcttaGGGACAGGATTATACAAGACATCTTCTTTTCT
TAACCATTCATGTGATCCCAACGTTGTTGCAATCTTCAATGGCACCAAAA
TACACATCCGAACGATCAAGGAAGTGCAAGAAGGAGAAGAGCTTTTTCTA
AGCTACATCAACCTCTTAGCCACCACAAAACATCGACAGTCTGAACTAAT
GGATGGGTACATGTTTACATGTAGTTGCTCCAAATGTAATGGTAATGGGT
TTTCAGACTTGATGATGTTGAGTATGAAATGCCCACAATGCACCTGTCTG
CAATCGCTTGATACACAATCAGGTAATGAATCTTTACGTTCTTTCTAATT
TCATGAAGTAGTTCCAAAACTAAGGGATATtgttcaatttgttttttttt
aaatagtcaGTTTCCGTTGGCAATATTTTTCAAGCTTCATGAAGGCTTTC
GACTTTGGTGCCAAtcatcatttttcaattttcgtcaTAGAAAGATCGTG
TGGATGTGACAAGAAGTGTGAAAGAAACAAATCAGCCATGTTGAAAGCTC
TCGATTGTATGGATTCTTTAGAAGCACTTTATAACTCAATTAACGTCATC
CCTACTCCAGACCAACACAAAAAGTTGGAACTGAAAATCTGTAAAGGAAG
ACAGCTCTTGGGACATTGTAATATTGCATTACTACATGCTTATGAAGTGG
GTATGGACGGTTGTCTTGATTATTCGGACTGGAAAGGGGCTTTGGAGTAT
GGCAAAAAGTTGGAGAAACTTTATCTCGTTTATCTGACGAAGAACCACCC
GAGTATCGGTCTTCATTATTTTAAACAAGGTATTATATTGAGCTTTCCTA
TTTTTATACAGTGTCTGGGAGATTACCAAAGTAGAGTCAATAATCACCTT
TATTCgaatttctattattcgaatttttctagtgtaattcgaactaatat
ATTGATTAATGATTAAGTcccatgaagatcgaattagagagaaagtCAAC
TGTAGTCTGTTTTCTATGTTAAGTAATATGAAAAGTGATGTAACTTTGAC
ACGTGCCTTTCTTTTCATTAACTCGTACAGATAAGCGTTTGTTTTACTAC
AAATTATTTAATCTTTATTCTTAGGAAAACTTGAGCTTCAGATGGAAAAT
CTTCGTGAAGGGATCAGTTATTTTGAAAAAGCCATGAAGATACTTTGTAT
TTCACACGGAGAGAAACATGAGCTTGTGGTGTTATTACAAGAAACTTTAC
AATCAGCTTTAATTGAGATAAACTGTGAACAGTTTGGTCACGTGGAAAAT
ATGATGAAGATGGAAGAACAATAATTTGCTGCATGAAATTCTGTTCCGTT
TAATGATCTTGTGGAATTTTTATTATTGATTGCTGCATGTTATGGTTCAA
GATTATCACAGGAAAGATGGTAAAAAGCAGCGAGTTCCTTTATTCTTTTG
TTCATGTTTGGGAACTGGTTTCTTTTAGTTAAAAAAACAACCAGTGCTAG
GAAGTGGCTATGGTTCCATCCTCACACTCTGGCCTGCACTTTGAACATTT
GCTGCTCGTCATCTCTTTGTATTGGGAACCAAAGACAGTCAACAGTcaac
cttttttttgaaatctttttatgACACACCTTACCTCATCATGCCGATTT
ATCAGATTTAGTTTTCATCATCATGCGGGACAAACAGTTAGCGGCGGACA
TGTGTACAGCCCTGCTGAAAATGCAAATGTTAAGCAAGCACGGCTCTGAC
AGTGATGATTGTCCGATACCAACTGCTTGATGCCTCTTTTGTTTGCATta
ttacttttgtttttattttatactcTTTGTACTTATGTTGATATTTTACT
GATCGAGCAAAATAAAGAACTGTTACATACTTCTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00023155-exon-sc0000444-1491911889:123455..124786 | TCONS_00023155-exon-sc0000444-1491911889:123455..124786 | Clytia hemisphaerica | exon |
| TCONS_00023155-exon-sc0000444-1510915933:123455..124786 | TCONS_00023155-exon-sc0000444-1510915933:123455..124786 | Clytia hemisphaerica | exon |
| TCONS_00023155-exon-sc0000444-1575043694:123455..124786 | TCONS_00023155-exon-sc0000444-1575043694:123455..124786 | Clytia hemisphaerica | exon |
| TCONS_00023155-exon-sc0000444-1491911889:125124..125426 | TCONS_00023155-exon-sc0000444-1491911889:125124..125426 | Clytia hemisphaerica | exon |
| TCONS_00023155-exon-sc0000444-1510915933:125124..125426 | TCONS_00023155-exon-sc0000444-1510915933:125124..125426 | Clytia hemisphaerica | exon |
| TCONS_00023155-exon-sc0000444-1575043694:125124..125426 | TCONS_00023155-exon-sc0000444-1575043694:125124..125426 | Clytia hemisphaerica | exon |
| TCONS_00023155-exon-sc0000444-1491911889:125595..125933 | TCONS_00023155-exon-sc0000444-1491911889:125595..125933 | Clytia hemisphaerica | exon |
| TCONS_00023155-exon-sc0000444-1510915933:125595..125933 | TCONS_00023155-exon-sc0000444-1510915933:125595..125933 | Clytia hemisphaerica | exon |
| TCONS_00023155-exon-sc0000444-1575043694:125595..125933 | TCONS_00023155-exon-sc0000444-1575043694:125595..125933 | Clytia hemisphaerica | exon |
| TCONS_00023155-exon-sc0000444-1491911889:126229..126991 | TCONS_00023155-exon-sc0000444-1491911889:126229..126991 | Clytia hemisphaerica | exon |
| TCONS_00023155-exon-sc0000444-1510915933:126229..126991 | TCONS_00023155-exon-sc0000444-1510915933:126229..126991 | Clytia hemisphaerica | exon |
| TCONS_00023155-exon-sc0000444-1575043694:126229..126991 | TCONS_00023155-exon-sc0000444-1575043694:126229..126991 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000444 | supercontig | sc0000444:123455..126991 + |
Blast
BLAST of TCONS_00023155 vs. Swiss-Prot (Human)
Match: PMVK (Phosphomevalonate kinase OS=Homo sapiens GN=PMVK PE=1 SV=3) HSP 1 Score: 152.14 bits (383), Expect = 2.392e-41 Identity = 69/194 (35.57%), Postives = 123/194 (63.40%), Query Frame = 3
Query: 21 SCAKIIIVLSGKRKSGKDYVADNIVKKISPERCHIMRVALPIKKHFCEKYNMDYKEMMTSSEYKELRRAEMIQWGEEQRNKDTGVFCRTEKNSAIDSG--KPVWILSDARRPSDVNYFREYARSLGVTFYAIRVSADIETREERGWKFTKNVDDVDSECALDSYDKWDFCFENSQNDSVIEKVEELTTNMKQIL 596
+++++ SGKRKSGKD+V + + ++ + C ++R++ P+K+ + +++ ++++ ++ +S YKE R +MI+WGEE+R D G FCR I G +P+W++SD RR SD+ +FRE + G +RV A ++R++RGW FT VDD +SEC LD++ +D+ EN V +++EE N+ + +
Sbjct: 6 GAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGFFCRK-----IVEGISQPIWLVSDTRRVSDIQWFRE---AYGAVTQTVRVVALEQSRQQRGWVFTPGVDDAESECGLDNFGDFDWVIENH---GVEQRLEEQLENLIEFI 188
The following BLAST results are available for this feature:
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