TCONS_00023137 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023137
Unique NameTCONS_00023137
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023137 ID=TCONS_00023137|Name=TCONS_00023137|organism=Clytia hemisphaerica|type=transcript|length=498bp
CTTAAAGTCAAATATTTTGCCTTAGTTTAATTTGTAAGGAGAAAATAAGA
GAgacatgtaatttttttaaatatctttttaacaatcAGTGTCAAAATAT
TCCTGAAGTGTATAAcattcttcagaatttaaagttcgagcgagaatcac
AACTTCGATAATCCCACTCTATTTCATTGGATAATTCAATCAAACATAAT
GACTTTGCTCGTAGATCGAAccatgaaaaggaaaagggagttttttatca
taaattagTCCAAGTATTGGTAAAGGCAACCAATAgaattttactttatc
tcactGTAATGCAAAGAAATGCAATTcatatctacaaaatcaataaagtt
tacATAGGTGTGACTATCTTGAGTCGAGGTTCTATTGAAGATCGCATTTG
TACTTTTCTATTAGGTTGTAAAAACTACCGTGtttcttcgaataaacgcc
ttgagcgtctttttaattttaagactttcaggAGGGGTGTTAAAGAAA
Run BLAST on NCBI

transcript from alignment at sc0000443:221391..221888

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023137 ID=TCONS_00023137|Name=TCONS_00023137|organism=Clytia hemisphaerica|type=transcript|length=498bp|location=Sequence derived from alignment at sc0000443:221391..221888 (Clytia hemisphaerica)
TTTCTTTAACACCCCTcctgaaagtcttaaaattaaaaagacgctcaagg
cgtttattcgaagaaaCACGGTAGTTTTTACAACCTAATAGAAAAGTACA
AATGCGATCTTCAATAGAACCTCGACTCAAGATAGTCACACCTATgtaaa
ctttattgattttgtagatatgAATTGCATTTCTTTGCATTACagtgaga
taaagtaaaattcTATTGGTTGCCTTTACCAATACTTGGActaatttatg
ataaaaaactcccttttccttttcatggTTCGATCTACGAGCAAAGTCAT
TATGTTTGATTGAATTATCCAATGAAATAGAGTGGGATTATCGAAGTTgt
gattctcgctcgaactttaaattctgaagaatgTTATACACTTCAGGAAT
ATTTTGACACTgattgttaaaaagatatttaaaaaaattacatgtcTCTC
TTATTTTCTCCTTACAAATTAAACTAAGGCAAAATATTTGACTTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013007XLOC_013007Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023137-exon-sc0000443-1491911889:221391..221888TCONS_00023137-exon-sc0000443-1491911889:221391..221888Clytia hemisphaericaexon
TCONS_00023137-exon-sc0000443-1510915933:221391..221888TCONS_00023137-exon-sc0000443-1510915933:221391..221888Clytia hemisphaericaexon
TCONS_00023137-exon-sc0000443-1575043694:221391..221888TCONS_00023137-exon-sc0000443-1575043694:221391..221888Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000443supercontigsc0000443:221391..221888 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12276	0.119711	0.277991	0	0.175675	0.130819	0.631311	0	0.206896	0.256274	0	0.490546	0.571508	0.0847882	0.348537	0.0748067	0.184311	0.472283	0.782982	0.546223	0.237383	0.521043	0	0.255933	0	0.11763	0	1.07787	1.22629	0.694108
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023137 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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