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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023135 ID=TCONS_00023135|Name=TCONS_00023135|organism=Clytia hemisphaerica|type=transcript|length=813bp
gatccatTATTCAATTCTCGTTGTATGcgttttgattctttttctttttc
atgctTTTCAGTACCTTTCACTTTTTCACGATACCTTTTAACAGAAGCAT
TTATTTGTCTGCGTGAGACTTTTGTTAAAATTGTACCTTTTATATCTTTC
TCATTgtgaaaatcagtttttagaTAAATGATGTTAAAAAGATTGGTATT
ACTATACTCTGACCTTATATATTGTTTAATCTCTCTAATgctttcaaact
ttaaaagaacTGAAGTTCCAATGCTCCCTTCAACTTGATGGCCATCAGAG
TTTCTACTATGCGGatcgaaaagaaaataattttgattgtaATGCATTAC
AGCTAGGCAATTTCCGGCTATTACTAAAACTGCACCAGAATGTTGCATTA
AAAGTTCCTCCTGAACAAAATTCACTGCAATATTACCAGTctcaaaaaag
ccttcaaaaatgttgaaatttagTGCACAAGTGCTTTCTCCTATATCAAT
GGTCTTAGAAAACTGTTCAATATATGGGGACTGCCCTTTAATACCCAACT
TTTTAAAATTGAAATCACCTTGGTCTAAAACATAATCCAAATCATGACTC
TTCCATAGTGATAATTTTCTAAACTTAGCATagcaaatagcaaaaaaaca
atttgaggaACATTGTATACCCGCCGTCTCACCAAATTTACCATTACCCT
GATGAAATGAACCTTGAACATTTGGACCTGGGTTAAGTTCTACATCGCCT
GATAATAAGAGTGTGTAATtaactttgaaaaaagtaagGTTTGGATCTCC
CGCTACATTGGGA Run BLAST on NCBI protein sequence of TCONS_00023135-protein >TCONS_00023135-protein ID=TCONS_00023135-protein|Name=TCONS_00023135-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
PNVAGDPNLTFFKVNYTLLLSGDVELNPGPNVQGSFHQGNGKFGETAGIQ
CSSNCFFAICYAKFRKLSLWKSHDLDYVLDQGDFNFKKLGIKGQSPYIEQ
FSKTIDIGESTCALNFNIFEGFFETGNIAVNFVQEELLMQHSGAVLVIAG
NCLAVMHYNQNYFLFDPHSRNSDGHQVEGSIGTSVLLKFESIREIKQYIR
SEYSNTNLFNIIYLKTDFHNEKDIKGTILTKVSRRQINASVKRYREKVKG
TEKHEKEKESKRIQRELNNG Run BLAST on NCBI transcript from alignment at sc0000443:202845..203657 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023135 ID=TCONS_00023135|Name=TCONS_00023135|organism=Clytia hemisphaerica|type=transcript|length=813bp|location=Sequence derived from alignment at sc0000443:202845..203657 (Clytia hemisphaerica)
TCCCAATGTAGCGGGAGATCCAAACcttacttttttcaaagttaATTACA
CACTCTTATTATCAGGCGATGTAGAACTTAACCCAGGTCCAAATGTTCAA
GGTTCATTTCATCAGGGTAATGGTAAATTTGGTGAGACGGCGGGTATACA
ATGTtcctcaaattgtttttttgctatttgctATGCTAAGTTTAGAAAAT
TATCACTATGGAAGAGTCATGATTTGGATTATGTTTTAGACCAAGGTGAT
TTCAATTTTAAAAAGTTGGGTATTAAAGGGCAGTCCCCATATATTGAACA
GTTTTCTAAGACCATTGATATAGGAGAAAGCACTTGTGCActaaatttca
acatttttgaaggcttttttgagACTGGTAATATTGCAGTGAATTTTGTT
CAGGAGGAACTTTTAATGCAACATTCTGGTGCAGTTTTAGTAATAGCCGG
AAATTGCCTAGCTGTAATGCATtacaatcaaaattattttcttttcgatC
CGCATAGTAGAAACTCTGATGGCCATCAAGTTGAAGGGAGCATTGGAACT
TCAgttcttttaaagtttgaaagcATTAGAGAGATTAAACAATATATAAG
GTCAGAGTATAGTAATACCAATCTTTTTAACATCATTTAtctaaaaactg
attttcacAATGAGAAAGATATAAAAGGTACAATTTTAACAAAAGTCTCA
CGCAGACAAATAAATGCTTCTGTTAAAAGGTATCGTGAAAAAGTGAAAGG
TACTGAAAagcatgaaaaagaaaaagaatcaaaacgCATACAACGAGAAT
TGAATAatggatc Coding sequence (CDS) from alignment at sc0000443:202845..203657 >TCONS_00023135 ID=TCONS_00023135|Name=TCONS_00023135|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at sc0000443:202845..203657 (Clytia hemisphaerica)
CCCAATGTAGCGGGAGATCCAAACcttacttttttcaaagttaATTACAC
ACTCTTATTATCAGGCGATGTAGAACTTAACCCAGGTCCAAATGTTCAAG
GTTCATTTCATCAGGGTAATGGTAAATTTGGTGAGACGGCGGGTATACAA
TGTtcctcaaattgtttttttgctatttgctATGCTAAGTTTAGAAAATT
ATCACTATGGAAGAGTCATGATTTGGATTATGTTTTAGACCAAGGTGATT
TCAATTTTAAAAAGTTGGGTATTAAAGGGCAGTCCCCATATATTGAACAG
TTTTCTAAGACCATTGATATAGGAGAAAGCACTTGTGCActaaatttcaa
catttttgaaggcttttttgagACTGGTAATATTGCAGTGAATTTTGTTC
AGGAGGAACTTTTAATGCAACATTCTGGTGCAGTTTTAGTAATAGCCGGA
AATTGCCTAGCTGTAATGCATtacaatcaaaattattttcttttcgatCC
GCATAGTAGAAACTCTGATGGCCATCAAGTTGAAGGGAGCATTGGAACTT
CAgttcttttaaagtttgaaagcATTAGAGAGATTAAACAATATATAAGG
TCAGAGTATAGTAATACCAATCTTTTTAACATCATTTAtctaaaaactga
ttttcacAATGAGAAAGATATAAAAGGTACAATTTTAACAAAAGTCTCAC
GCAGACAAATAAATGCTTCTGTTAAAAGGTATCGTGAAAAAGTGAAAGGT
ACTGAAAagcatgaaaaagaaaaagaatcaaaacgCATACAACGAGAATT
GAATAatgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023135-exon-sc0000443-1491911889:202845..203657 | TCONS_00023135-exon-sc0000443-1491911889:202845..203657 | Clytia hemisphaerica | exon |
| TCONS_00023135-exon-sc0000443-1510915933:202845..203657 | TCONS_00023135-exon-sc0000443-1510915933:202845..203657 | Clytia hemisphaerica | exon |
| TCONS_00023135-exon-sc0000443-1575043694:202845..203657 | TCONS_00023135-exon-sc0000443-1575043694:202845..203657 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000443 | supercontig | sc0000443:202845..203657 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006928 | htUSP_central_domain |
Blast
The following BLAST results are available for this feature:
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