TCONS_00023132 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023132
Unique NameTCONS_00023132
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023132 ID=TCONS_00023132|Name=TCONS_00023132|organism=Clytia hemisphaerica|type=transcript|length=1275bp
tGACTCTTCAAGCATCTTGGAGGGGGGTCTTTTTCCCCCCCAAAAAATAT
AtctttgataacttttgaaacatccaatcgacttgaaattttgcatgtGT
ACACCAAATATGAATTGGCATCATTGATGAAAATTTAGAtatcattgatg
acgtcatcgccaCCTTCAAAAAACTGCCTGTGGGAGAAACTTTGTGGTTA
ATTTCTAAATATTTACACACGGCTTTAGTTTGCTGCTCTTATTACTGTCA
TAACCCATTGAAAACCAATGTTTTCTTGTTTTCCATTTCTTTTAGACAAA
AAATGTctcaaaaaattggaaaattaatGCAGAATAATACAGCTTTCTTT
CTCTGTGACATCCAAGACAAATTCCGTAATTCCATTACGTATTTTCCTGA
AATTGTTATTGTTGCTCAACGGTTATTGAAAGCTGCCAAAATTCTAAATG
TTCCTGTGGTAGCTACAGAGCAGTATCCTCGGGGTCTAGGGAACACTGTT
CCAGAACTTGCTGAGATTCTTAAGGAAAACGAAAATGCTAAGGTTTAtga
taaaaccttattttccaTGTGCACTGATAATATCATGACAGATTTACGAA
GCAAGGTTCCAGATTTGAAGTCAGTTGTTTTATTTGGTATTGAAGCTCAT
GTATGTGTCCAACAAACTGCTTTGGAACTTTTGGATCAAGGCCTTGAAGT
TCACCTGATTGCAGACAGCACCTCATCTCGAAGTATGACTGATAGGATGT
TTACTTTTGAGAGAATTCGTCAAGCTGGCGGTTTCATAACAACAAGTGAA
TCACTTCTTTTCATGTTGTTGAAAGATGCAAAACATCCCAACTTTAAAGA
AGTCCAGAAGTTGATCATAGAATCTGCCCCTTACCAAGGACTGGTTCCAA
AGTTGTGATGACTGATGGTGAAATTTAGCATTGATAAttgtttttaagga
aaattataattgaaattaGCATTATGGTGACGCTGATTTCTTGGAAAAAG
GACTACTCATATACAAGTCAATGGTAATTCATTTTAAAGGTGAACCTAAA
TTTTGTAGTAATGCATTTTCTGTACTATTTTTAGataaaattataatatt
ttttaaatggaaaaattaattatgaTTTGATTTCAACGGCTATTGGTTCG
TCACTGATTACACAGATTACTGTCATTAGGCAAAATTAGTGTCTGAGAAA
ACTGATATCTTTTCCCGTGGGGGAGAGgtactcaaggtaaatgacacTTG
ACAGACTGTACGTGCGGCCCTATAG
Run BLAST on NCBI

protein sequence of TCONS_00023132-protein

>TCONS_00023132-protein ID=TCONS_00023132-protein|Name=TCONS_00023132-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MSQKIGKLMQNNTAFFLCDIQDKFRNSITYFPEIVIVAQRLLKAAKILNV
PVVATEQYPRGLGNTVPELAEILKENENAKVYDKTLFSMCTDNIMTDLRS
KVPDLKSVVLFGIEAHVCVQQTALELLDQGLEVHLIADSTSSRSMTDRMF
TFERIRQAGGFITTSESLLFMLLKDAKHPNFKEVQKLIIESAPYQGLVPK
L
Run BLAST on NCBI

transcript from alignment at sc0000443:91093..92367

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023132 ID=TCONS_00023132|Name=TCONS_00023132|organism=Clytia hemisphaerica|type=transcript|length=1275bp|location=Sequence derived from alignment at sc0000443:91093..92367 (Clytia hemisphaerica)
CTATAGGGCCGCACGTACAGTCTGTCAAgtgtcatttaccttgagtacCT
CTCCCCCACGGGAAAAGATATCAGTTTTCTCAGACACTAATTTTGCCTAA
TGACAGTAATCTGTGTAATCAGTGACGAACCAATAGCCGTTGAAATCAAA
tcataattaatttttccatttaaaaaatattataattttatCTAAAAATA
GTACAGAAAATGCATTACTACAAAATTTAGGTTCACCTTTAAAATGAATT
ACCATTGACTTGTATATGAGTAGTCCTTTTTCCAAGAAATCAGCGTCACC
ATAATGCtaatttcaattataattttccttaaaaacaaTTATCAATGCTA
AATTTCACCATCAGTCATCACAACTTTGGAACCAGTCCTTGGTAAGGGGC
AGATTCTATGATCAACTTCTGGACTTCTTTAAAGTTGGGATGTTTTGCAT
CTTTCAACAACATGAAAAGAAGTGATTCACTTGTTGTTATGAAACCGCCA
GCTTGACGAATTCTCTCAAAAGTAAACATCCTATCAGTCATACTTCGAGA
TGAGGTGCTGTCTGCAATCAGGTGAACTTCAAGGCCTTGATCCAAAAGTT
CCAAAGCAGTTTGTTGGACACATACATGAGCTTCAATACCAAATAAAACA
ACTGACTTCAAATCTGGAACCTTGCTTCGTAAATCTGTCATGATATTATC
AGTGCACAtggaaaataaggttttatcaTAAACCTTAGCATTTTCGTTTT
CCTTAAGAATCTCAGCAAGTTCTGGAACAGTGTTCCCTAGACCCCGAGGA
TACTGCTCTGTAGCTACCACAGGAACATTTAGAATTTTGGCAGCTTTCAA
TAACCGTTGAGCAACAATAACAATTTCAGGAAAATACGTAATGGAATTAC
GGAATTTGTCTTGGATGTCACAGAGAAAGAAAGCTGTATTATTCTGCatt
aattttccaattttttgagACATTTTTTGTCTAAAAGAAATGGAAAACAA
GAAAACATTGGTTTTCAATGGGTTATGACAGTAATAAGAGCAGCAAACTA
AAGCCGTGTGTAAATATTTAGAAATTAACCACAAAGTTTCTCCCACAGGC
AGTTTTTTGAAGGtggcgatgacgtcatcaatgataTCTAAATTTTCATC
AATGATGCCAATTCATATTTGGTGTACacatgcaaaatttcaagtcgatt
ggatgtttcaaaagttatcaaagaTATATTTTTTGGGGGGGAAAAAGACC
CCCCTCCAAGATGCTTGAAGAGTCa

Coding sequence (CDS) from alignment at sc0000443:91093..92367

>TCONS_00023132 ID=TCONS_00023132|Name=TCONS_00023132|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0000443:91093..92367 (Clytia hemisphaerica)
TCACAACTTTGGAACCAGTCCTTGGTAAGGGGCAGATTCTATGATCAACT
TCTGGACTTCTTTAAAGTTGGGATGTTTTGCATCTTTCAACAACATGAAA
AGAAGTGATTCACTTGTTGTTATGAAACCGCCAGCTTGACGAATTCTCTC
AAAAGTAAACATCCTATCAGTCATACTTCGAGATGAGGTGCTGTCTGCAA
TCAGGTGAACTTCAAGGCCTTGATCCAAAAGTTCCAAAGCAGTTTGTTGG
ACACATACATGAGCTTCAATACCAAATAAAACAACTGACTTCAAATCTGG
AACCTTGCTTCGTAAATCTGTCATGATATTATCAGTGCACAtggaaaata
aggttttatcaTAAACCTTAGCATTTTCGTTTTCCTTAAGAATCTCAGCA
AGTTCTGGAACAGTGTTCCCTAGACCCCGAGGATACTGCTCTGTAGCTAC
CACAGGAACATTTAGAATTTTGGCAGCTTTCAATAACCGTTGAGCAACAA
TAACAATTTCAGGAAAATACGTAATGGAATTACGGAATTTGTCTTGGATG
TCACAGAGAAAGAAAGCTGTATTATTCTGCattaattttccaattttttg
agACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013002XLOC_013002Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023132-proteinTCONS_00023132-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023132-exon-sc0000443-1491911889:91093..92367TCONS_00023132-exon-sc0000443-1491911889:91093..92367Clytia hemisphaericaexon
TCONS_00023132-exon-sc0000443-1510915933:91093..92367TCONS_00023132-exon-sc0000443-1510915933:91093..92367Clytia hemisphaericaexon
TCONS_00023132-exon-sc0000443-1575043694:91093..92367TCONS_00023132-exon-sc0000443-1575043694:91093..92367Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000443supercontigsc0000443:91093..92367 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
128.732	129.915	127.593	126.932	65.931	46.2831	40.9911	48.3097	34.6641	36.7884	39.8213	23.761	23.8165	21.7454	40.2153	45.0432	35.8771	38.4886	23.8806	24.9893	31.7276	28.4871	52.6983	49.9573	24.7984	30.6786	39.018	29.2218	46.433	40.0442
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000868Isochorismatase-like
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
Blast
[Close]
BLAST of TCONS_00023132 vs. Swiss-Prot (Human)
Match: ISOC1 (Isochorismatase domain-containing protein 1 OS=Homo sapiens GN=ISOC1 PE=1 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 6.063e-63
Identity = 101/198 (51.01%), Postives = 141/198 (71.21%), Query Frame = 3 
Query:  315 IGKLMQNNTAFFLCDIQDKFRNSITYFPEIVIVAQRLLKAAKILNVPVVATEQYPRGLGNTVPELAEILKENENAK-VYDKTLFSMCTDNIMTDLRSKVPDLKSVVLFGIEAHVCVQQTALELLDQGLEVHLIADSTSSRSMTDRMFTFERIRQAGGFITTSESLLFMLLKDAKHPNFKEVQKLIIESAPYQGLVPKL 905
            +G L  ++T FF CD+Q++FR +I YF +I+ V QRLL+ A+IL +PV+ TEQYP+GLG+TV E+     +    K V  KT FSM    +   L +++P ++SVVLFG+E HVC+QQTALEL+ +G+EVH++AD+TSSRSM DRMF  ER+ + G  +TTSE++L  L+ D  HP FKE+Q LI  SAP  GL+ K+
Sbjct:  107 LGNLTPSSTVFFCCDMQERFRPAIKYFGDIISVGQRLLQGARILGIPVIVTEQYPKGLGSTVQEI-----DLTGVKLVLPKTKFSMVLPEVEAAL-AEIPGVRSVVLFGVETHVCIQQTALELVGRGVEVHIVADATSSRSMMDRMFALERLARTGIIVTTSEAVLLQLVADKDHPKFKEIQNLIKASAPESGLLSKV 298
The following BLAST results are available for this feature:
BLAST of TCONS_00023132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ISOC16.063e-6351.01Isochorismatase domain-containing protein 1 OS=Hom... [more]
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