|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023124 ID=TCONS_00023124|Name=TCONS_00023124|organism=Clytia hemisphaerica|type=transcript|length=4350bpRun BLAST on NCBI protein sequence of TCONS_00023124-protein >TCONS_00023124-protein ID=TCONS_00023124-protein|Name=TCONS_00023124-protein|organism=Clytia hemisphaerica|type=polypeptide|length=994bp MDFKIVKMRNFHLVLFSLVMFKGLLSMNDLTDKDDVKHTIQRRSSNSDVCRun BLAST on NCBI transcript from alignment at sc0000443:136803..179414- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023124 ID=TCONS_00023124|Name=TCONS_00023124|organism=Clytia hemisphaerica|type=transcript|length=42612bp|location=Sequence derived from alignment at sc0000443:136803..179414- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000443:136803..179414- >TCONS_00023124 ID=TCONS_00023124|Name=TCONS_00023124|organism=Clytia hemisphaerica|type=CDS|length=38805bp|location=Sequence derived from alignment at sc0000443:136803..179414- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023124 vs. Swiss-Prot (Human)
Match: ROR2 (Tyrosine-protein kinase transmembrane receptor ROR2 OS=Homo sapiens GN=ROR2 PE=1 SV=2) HSP 1 Score: 321.242 bits (822), Expect = 5.167e-92 Identity = 230/790 (29.11%), Postives = 363/790 (45.95%), Query Frame = 2
Query: 236 TIQRRSSNSDVCDDNRPCQ--------IPEFRTHPRNISYPIKQR---------LRCRAVGNPQPIITWRKLNVNSNAMADTSIDPQNKHYRISTERKRIKDGNFKGYREMVVSTMNIESWNSDTNPAVYACVAKNQEGETLSKKSFVTKEGAGFPNSHGVPGDKNFKLEEKCLPLKNSSACWGYLDPTRSVYTEGNIEVKEDMLQTIKKVLAM--NQHKISNKCKPLVLPFLCYFNMPYCSHGNNLKRRPQMICKQDCTLLSKTDCQKEFEFAQKD-RSLTAVVPQSCDELP------STNCTKTFQEMDRVRNYLEQMKAMASLLPKVGTKVNSGDFCYFDKGEEYLGIENRTVTGLSCLRWK-----------------NSNHNFCRNPSNVLRERPWCFTDN-NGAFAYCNIQQCAIPDSQTSSILYTIIPCXXXXXXXXXXXXXXXWRRHKEHYYQATP------GSPKQ--LVPRVN----PKILELNREDLCDFRMLGDGNIGRVYTADYTGSKDGRTFTASVAVKAIIEKASNQQIQDFVREAETRANFKHENVIALIGVISKEEPLSLIYEYTEFGDLHEYLLRHSPNFSDAHAADN----CGPLEFNDLFAIAKQIANGMSYLSSHAFVHKDLAARNCLVAENGIVKISDFSGLCDMYAGDYYRAPGRPPLPVRWMAPEAISQMNFTTASDVWSFSILLWEVFSYGSRPFFGLSNYQAMEHILDSKLLPCPDHCPKPIFEIMAECWVVDPNDRPAFPEIYNNLKSISDV----ASTQSSG 2413
++ R S +V D N P IP + + N P+ L C+ GNP P + W K N + R+ I G R + I+ ++ T+ Y CVA N + + G +H D + + C P + AC ++ R++Y + +++++ ++ I M +S++C +P C+F P C + +P+ +C+ +C +L C++E+ A+ + L + C+ LP + NC + +R+ Y + CY G +Y G + T +G C W H +CRNP + E PWCFT N N C++ C+ DS ILY ++P + L+++ + R+K+ +TP SP Q +P +N K+ E++ + LG+ G+VY G G T +VA+K + +KA ++F EA RA +H NV+ L+GV++K++PLS+I+ Y GDLHE+L+ SP+ SD + D+ LE D + QIA GM YLSSH VHKDLA RN LV + VKISD ++YA DYY+ G LP+RWMAPEAI F+ SD+WS+ ++LWEVFSYG +P+ G SN +E I + ++LPCPD CP ++ +M ECW P+ RP F +I++ L++ ++ +S Q+SG
Sbjct: 27 SVSRTSGEVEVLDPNDPLGPLDGQDGPIPTLKGYFLNFLEPVNNITIVQGQTAILHCKVAGNPPPNVRWLK----------------NDAPVVQEPRRIIIRKTEYGSR------LRIQDLDT-TDTGYYQCVATNGMKTITATGVLFVRLGPTHSPNHNFQDD--YHEDGFCQPYRGI-ACARFIG-NRTIYVD-SLQMQGEIENRITAAFTMIGTSTHLSDQCSQFAIPSFCHFVFPLCD-ARSRTPKPRELCRDECEVLESDLCRQEYTIARSNPLILMRLQLPKCEALPMPESPDAANCMRIGIPAERLGRYHQ---------------------CYNGSGMDYRGTASTTKSGHQCQPWALQHPHSHHLSSTDFPELGGGHAYCRNPGGQM-EGPWCFTQNKNVRMELCDVPSCSPRDSSKMGILYILVPSIAIPLVIACLFFLVCMCRNKQKASASTPQRRQLMASPSQDMEMPLINQHKQAKLKEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQ-TQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPH-SDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWGNLSNYNSSAQTSG 763 The following BLAST results are available for this feature:
BLAST of TCONS_00023124 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.