TCONS_00023068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023068
Unique NameTCONS_00023068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length939

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023068 ID=TCONS_00023068|Name=TCONS_00023068|organism=Clytia hemisphaerica|type=transcript|length=939bp
GTAAAagacaaaataagattttaatgGAAAAAATGGAGAAAGAAAATAGT
GAATTAAAAGAGCAAATCAACGCTCTGAAAACGACAATAAACAATGAAAA
CCAAACACCAAAGGACAACGAGAAAAAGGACATTACAATGAAGGACAATG
ACGAAAAGGACAAAAAACCAAAGAACTCaaagaaaaaataccaaaaatac
cGCAAGTATAGACATAAAAGTAAAACAACAGCAAAGCAGCAAAGCAAATT
TATTCCCAACCTTCAATTGCAACCACCCAACCTTCCATTGCAACCACCCA
ACCTTCCATTGCAACCACAACCACAAACACTTTTTTACCCTCAACCACAT
TTGTATCATGTTCCTGTTCCTGTCCCATTTTTTTCACCTGTAACTTTACC
TTTTTATCCACTTTACAGATTTTAATTGTATATCTTTAATTTGTTCTTTG
CTGTTGTTTTGCTTGCTTTAAGAGATAAAATCGTGTTTTTCTTTCCAATT
CGTGTCTTTGTAAGATTAAGAAATAAATTGAATTTGTCCTTGTATTAGTG
TCCTTGCTAAAAGATAATTGAATTTTGTCCTTTTGTCCTTTGAGTGAATA
AAAGTCTGATTGTCCTCAttcatttgtttttcaaaattactattttcttt
cTCCAGATCTTTTAATTCAATCTAGTTTTGATCATTTTACGATTGCCTTC
GATCccaattttctcagttttttgCCTCGTGTTTTCTCTAATGCCTGCCT
TGCATCATTTTCTGCCAATTCAACTTAAAAGGCATcatctttgtaaaata
tttcaatcatAATTATCATTCTAAAAAgacttttagattttgaaataata
ttatatttccattatatatttaattatttattttaaagatatttgaaatt
attttattttataacaagttgaaaataatttattgtTTT
Run BLAST on NCBI

protein sequence of TCONS_00023068-protein

>TCONS_00023068-protein ID=TCONS_00023068-protein|Name=TCONS_00023068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
KRQNKILMEKMEKENSELKEQINALKTTINNENQTPKDNEKKDITMKDND
EKDKKPKNSKKKYQKYRKYRHKSKTTAKQQSKFIPNLQLQPPNLPLQPPN
LPLQPQPQTLFYPQPHLYHVPVPVPFFSPVTLPFYPLYRF
Run BLAST on NCBI

transcript from alignment at sc0000439:54149..55087

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023068 ID=TCONS_00023068|Name=TCONS_00023068|organism=Clytia hemisphaerica|type=transcript|length=939bp|location=Sequence derived from alignment at sc0000439:54149..55087 (Clytia hemisphaerica)
AAAacaataaattattttcaacttgttataaaataaaataatttcaaata
tctttaaaataaataattaaatatataatggaaatataatattatttcaa
aatctaaaagtcTTTTTAGAATGATAATTatgattgaaatattttacaaa
gatgATGCCTTTTAAGTTGAATTGGCAGAAAATGATGCAAGGCAGGCATT
AGAGAAAACACGAGGcaaaaaactgagaaaattggGATCGAAGGCAATCG
TAAAATGATCAAAACTAGATTGAATTAAAAGATCTGGAgaaagaaaatag
taattttgaaaaacaaatgaaTGAGGACAATCAGACTTTTATTCACTCAA
AGGACAAAAGGACAAAATTCAATTATCTTTTAGCAAGGACACTAATACAA
GGACAAATTCAATTTATTTCTTAATCTTACAAAGACACGAATTGGAAAGA
AAAACACGATTTTATCTCTTAAAGCAAGCAAAACAACAGCAAAGAACAAA
TTAAAGATATACAATTAAAATCTGTAAAGTGGATAAAAAGGTAAAGTTAC
AGGTGAAAAAAATGGGACAGGAACAGGAACATGATACAAATGTGGTTGAG
GGTAAAAAAGTGTTTGTGGTTGTGGTTGCAATGGAAGGTTGGGTGGTTGC
AATGGAAGGTTGGGTGGTTGCAATTGAAGGTTGGGAATAAATTTGCTTTG
CTGCTTTGCTGTTGTTTTACTTTTATGTCTATACTTGCggtatttttggt
attttttctttGAGTTCTTTGGTTTTTTGTCCTTTTCGTCATTGTCCTTC
ATTGTAATGTCCTTTTTCTCGTTGTCCTTTGGTGTTTGGTTTTCATTGTT
TATTGTCGTTTTCAGAGCGTTGATTTGCTCTTTTAATTCACTATTTTCTT
TCTCCATTTTTTCcattaaaatcttattttgtctTTTAC

Coding sequence (CDS) from alignment at sc0000439:54149..55087

>TCONS_00023068 ID=TCONS_00023068|Name=TCONS_00023068|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at sc0000439:54149..55087 (Clytia hemisphaerica)
TTAAAATCTGTAAAGTGGATAAAAAGGTAAAGTTACAGGTGAAAAAAATG
GGACAGGAACAGGAACATGATACAAATGTGGTTGAGGGTAAAAAAGTGTT
TGTGGTTGTGGTTGCAATGGAAGGTTGGGTGGTTGCAATGGAAGGTTGGG
TGGTTGCAATTGAAGGTTGGGAATAAATTTGCTTTGCTGCTTTGCTGTTG
TTTTACTTTTATGTCTATACTTGCggtatttttggtattttttctttGAG
TTCTTTGGTTTTTTGTCCTTTTCGTCATTGTCCTTCATTGTAATGTCCTT
TTTCTCGTTGTCCTTTGGTGTTTGGTTTTCATTGTTTATTGTCGTTTTCA
GAGCGTTGATTTGCTCTTTTAATTCACTATTTTCTTTCTCCATTTTTTCc
attaaaatcttattttgtctTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012955XLOC_012955Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023068-proteinTCONS_00023068-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023068-exon-sc0000439-1491911889:54149..55087TCONS_00023068-exon-sc0000439-1491911889:54149..55087Clytia hemisphaericaexon
TCONS_00023068-exon-sc0000439-1510915933:54149..55087TCONS_00023068-exon-sc0000439-1510915933:54149..55087Clytia hemisphaericaexon
TCONS_00023068-exon-sc0000439-1575043694:54149..55087TCONS_00023068-exon-sc0000439-1575043694:54149..55087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000439supercontigsc0000439:54149..55087 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.247485	0.179805	0.0695594	0.0652846	1.31619	1.14357	2.19117	1.35247	1.85958	1.58004	1.35762	1.07525	0.750017	0.874574	0.674502	0.58536	0.652343	0.60561	3.07318	1.36887	1.74471	1.69168	0.69121	0.593654	1.36891	1.30393	2.27387	2.90592	0.749192	0.294331
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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