TCONS_00023036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023036
Unique NameTCONS_00023036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1632

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023036 ID=TCONS_00023036|Name=TCONS_00023036|organism=Clytia hemisphaerica|type=transcript|length=1632bp
tagtGATCGTTATGCACGCCTTGATAGACCTCCACCCAGAGGTGGCTTTC
GTGGTAGAGGCCGTGGGCGTGGGGATTATGGTGGCCGTGGTGGTTATGGT
GGCCGAGGGGGTTATGGTGGCCGAGGAGACTATGGTGGCCGAGGTGACTA
TGGTGGCCGAGGAGACTATGGTGGCCGAGGTGGAGGAAGAGGAAGAGGTG
ACTACGGCCGTGACACCTACCAGAGGGATCCTTACGCCAGAGACCCGTAT
CTTCCGAGGGACCCTTATGCAAGAGATCCATACCCGAGAGACCAACACAG
AGATTCTTATGGAAGGGACCCTTACTCAAAAAGTGGATACAGGGAACGCA
GCCCGCCAAGAACATATGATTATTCAAGAGCACCTGCATCTGACCCATAT
GCTGCTGAAAGAAGACGTTTAGCTTACGGGGACTCCACCCCTTCTAGTAG
CTCCGCTCCGTATGCTACTCAAAGTAAACGGGCTGATCCTTATGCTAGTG
GTCAAAGCCAACGAAGTGACCCCTATGCCAGCCAGCGAAGTGACCCCTCT
GCTAGCCAGAGAGGTGATCCCTATGCTAGCCAAAGAAGTGATCCCTATGC
TAGCCAAAGAAGTGACCCCTATTCAAAGGAACGATCTGCTCCCTACGCCA
GCCAAACGACTGACCCTTATGCTACAAGCAGACCAGTACAAAGTCAGCAA
GTTGCTTCTGCGCCGTACGCCACACAAAGTCAAGCATCGACTGCAACTTA
CGCTACGCAAAGTTACGCTGCCACTCCATCTTATGCTACACCTGCACGTA
CCGCATCCTATTCCTCTTATCCAGCTCAGACCCAATCAAGCTCCGCATAT
GCAACTCAAAGTTATGCAAGCTCCTCATATGCCACTCAAAGTTATGCAAG
CTCTTCATATGCAACTCAAAGTTATGCAAGCTCTTATCCTGCTCAAAGTC
AATCGAGTGCCGCGCCTTACGCCACTCAAAGCCAAAACGGTGGAGCTCGT
TATGCAACTCAAAGTTATGCTCAATATGCAGCAGACTCACCGACAAAGAG
TTTGCCTTATCAGCAATCCACTAGTGTTTCTTCTGCTTCCTATGGCACCT
CAGCTTCAGCATACAGTGCACAACCTGCGGCTGCTACTCCTGGCTCTGCA
TCAGCTGGCTACAGTTACAGTTACCGCTAGATACCAGGTCGAATGCGTGA
TTCAAATCCAAGCTCTTACGAAGGAAAATCGAGTCGTGTCGAGTCGTGTC
GTATGTCGTATGTCGGGTATTATCGGAAATTTATCGCGGAATATCAAGGC
TTTACTTACGTTCGACgggaaaaagacaaaaaataacaacagATAGTACA
AATAAATTAAGGACGACggactttcttttttatttcgaacTCGACGTATC
GTTTTATCGCTTTTTTTACTCGCGTATCACTTTTCGTGGTGCATATATGT
GATTTATTACTGAAATACTTTTTACCTCTTATATGAAAATCATGTTCTAA
TTGTTATGTGTCTACGTagatgtcccaaaaaaagcggaaatatttttata
aaaagtcgAAACTCATTATCTAAAATGAGCtaaataattgaaataagagT
ACAATTCTttgttcaatcaatagatattcaat
Run BLAST on NCBI

transcript from alignment at sc0000439:133345..136568+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023036 ID=TCONS_00023036|Name=TCONS_00023036|organism=Clytia hemisphaerica|type=transcript|length=3224bp|location=Sequence derived from alignment at sc0000439:133345..136568+ (Clytia hemisphaerica)
tagtGATCGTTATGCACGCCTTGATAGACCTCCACCCAGAGGTGGCTTTC
GTGGTAGAGGCCGTGGGCGTGGGGATTATGGTGGCCGTGGTGGTTATGGT
GGCCGAGGGGGTTATGGTGGCCGAGGTGACTATGGTCGTGATCGATATAC
ATAAGTTGACGGAGACTATGGTGGCCGAGGGGGTTATGGTGGCCGAGGTG
ACTATGGTCGTGATCGATATACATAAGTTGACGGAGACTATGGTGGCCGA
GGGGGTTATGGTGGCCGAGGTGACTATGGTCGTGATCGATATACATAAGT
TGACGGAGACTATGGTGGCCGAGGTGACTATGGTGGCCGAGGAGACTATG
GTGGCCGAGGTGGAGGAAGAGGAAGAGGTGACTACAGCCGTGACACCTAC
CAGAGGGATCCTTACGCCAGAGACCCGTATCTTCCGAGGGACCCTTATGC
AAGAGATCCATACCCGAGAGACCAACACAGAGATTCTTATGGAAGGGACC
CTTACTCAAAAAGTGGATACAGGGAACGCAGCCCGCCAAGAACATATGAT
TATTCAAGGTATACCTCCCATCCCCATAAAAAACGTTAGGAAAAGTTACA
CCTATGCAGAAACCATGAGATGGCTGCAAATATACCACTTTTTTATATAT
CTTTTTGAAGGGGGTACAAATACTACGCAGGGCTGAATAATAGTTCAGTT
GACTTGTATTATTCAATGTTAATACTATGAAACCATTGCCTGTACTGAGA
GTATTATTCTTCCTTATAGAGCACCTGCATCTGACCCATATGCTGCTGAA
AGAAGACGTTTAGCTTACGGGGACTCCACCCCTTCTAGTAGCTCTGCTCC
GTATGCTACTCAAAGTAAACGGGCTGATCCTTATGCTAGTGGTCAAAGCC
AACGAAGTGACCCCTATGCCAGCCAGCGAAGTGACCCCTCTGCTAGCCAG
AGAGGTGATCCCTATGCTAGCCAAAGAAGTGATCCCTATGCTAGCCAAAG
AAGTGACCCCTATTCAAAGGAACGATCTGCTCCCTACGCCAGCCAAACGA
CTGACCCTTATGCTACAAGCAGACCAGTACAAAGTCAGCAAGTTGCTTCT
GCGCCGTACGCCACACAAAGTNGGTGGTTATGGTGGCCGAGGAGACTATG
GTGGCCGAGGTGACTATGGTGGCCGAGGAGACTATGGTGGCCGAGGTGGA
GGAAGAGGAAGAGGTGACTACGGCCGTGACACCTACCAGAGGGATCCTTA
CGCCAGAGACCCGTATCTTCCGAGGGACCCTTATGCAAGAGATCCATACC
CGAGAGACCAACACAGAGATTCTTATGGAAGGGACCCTTACTCAAAAAGT
GGATACAGGGAACGCAGCCCGCCAAGAACATATGATTATTCAAGGTATAC
CTCCCATCCCCATAAAAAACGTTAGGAAAAGTTACACCTATGCAGAAACC
ATGAGATGGCTGCAAATATACCACTTTTTTATATATCTTTTTGAAGGGGG
TACAAATACTACGCAGGGCTGAATAATAGTTCAGTTGACTTGTATTATTC
AATGTTAATACTATGAAACCATTGCCTGTACTGAGAGTATTATTCTTCCT
TATAGAGCACCTGCATCTGACCCATATGCTGCTGAAAGAAGACGTTTAGC
TTACGGGGACTCCACCCCTTCTAGTAGCTCCGCTCCGTATGCTACTCAAA
GTAAACGGGCTGATCCTTATGCTAGTGGTCAAAGCCAACGAAGTGACCCC
TATGCCAGCCAGCGAAGTGACCCCTCTGCTAGCCAGAGAGGTGATCCCTA
TGCTAGCCAAAGAAGTGATCCCTATGCTAGCCAAAGAAGTGACCCCTATT
CAAAGGAACGATCTGCTCCCTACGCCAGCCAAACGACTGACCCTTATGCT
ACAAGCAGACCAGTACAAAGTCAGCAAGTTGCTTCTGCGCCGTACGCCAC
ACAAAGTCAAGCATCGACTGCAACTTACGCTACGCAAAGTTACGCTGCCA
CTCCATCTTATGCTACACCTGCACGTACCGCATCCTATTCCTCTTATCCA
GCTCAGACCCAATCAAGCTCCGCATATGCAACTCAAAGTTATGCAAGCTC
CTCATATGCCACTCAAAGTTATGCAAGCTCTTCATATGCAACTCAAAGTT
ATGCAAGCTCTTATCCTGCTCAAAGTCAATCGAGTGCCGCGCCTTACGCC
ACTCAAAGCCAAAACGGTGGAGCTCGTTATGCAACTCAAAGTTATGCTCA
ATATGCAGCAGACTCACCGACAAAGAGTTTGCCTTATCAGCAATCCACTA
GTGTTTCTTCTGCTTCCTATGGCACCTCAGCTTCAGCATACAGTGCACAA
CCTGCGGCTGCTACTCCTGGCTCTGCATCAGCTGGCTACAGTTACAGTTA
CCGCTAGATACCAGGTTTGATCCTTTCTAAATTGTTTTCACAACTTTTTT
TTATCGTCACAATTTTGTTGCTATACGTTTTATTTCTTCTACAGTTTGAA
GTTTTCGCTTTTTTGTTTTGTccgagaaaaagtgaaaattgttCCACTTT
TTTAGTAGTTGAATGAGAATGGGATATCCAGAACctctaattcatgatat
gcaccactggagagtcttctgagaagttatttaaaattttccacccaata
cgtcacttaaacaatagaatttttgaaaattcttggaagcCTCTTAAGTG
GTGTATATCCATGAATTAAATGTACTTTTTCAATGAGAAAGGGAGATCGA
TTCACTGAGGTTTTCAATCGTTTCTTTAGGTCGAATGCGTGATTCAAATC
CAAGCTCTTACGAAGGAAAATCGAGTCGTGTCGAGTCGTGTCGTATGTCG
TATGTCGGGTATTATCGGAAATTTATCGCGGAATATCAAGGCTTTACTTA
CGTTCGACgggaaaaagacaaaaaataacaacagATAGTACAAATAAATT
AAGGACGACggactttcttttttatttcgaacTCGACGTATCGTTTTATC
GCTTTTTTTACTCGCGTATCACTTTTCGTGGTGCATATATGTGATTTATT
ACTGAAATACTTTTTACCTCTTATATGAAAATCATGTTCTAATTGTTATG
TGTCTACGTagatgtcccaaaaaaagcggaaatatttttataaaaagtcg
AAACTCATTATCTAAAATGAGCtaaataattgaaataagagTACAATTCT
ttgttcaatcaatagatattcaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012945XLOC_012945Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023036-exon-sc0000439-1491911889:133345..133469TCONS_00023036-exon-sc0000439-1491911889:133345..133469Clytia hemisphaericaexon
TCONS_00023036-exon-sc0000439-1510915933:133345..133469TCONS_00023036-exon-sc0000439-1510915933:133345..133469Clytia hemisphaericaexon
TCONS_00023036-exon-sc0000439-1575043694:133345..133469TCONS_00023036-exon-sc0000439-1575043694:133345..133469Clytia hemisphaericaexon
TCONS_00023036-exon-sc0000439-1491911889:134486..134738TCONS_00023036-exon-sc0000439-1491911889:134486..134738Clytia hemisphaericaexon
TCONS_00023036-exon-sc0000439-1510915933:134486..134738TCONS_00023036-exon-sc0000439-1510915933:134486..134738Clytia hemisphaericaexon
TCONS_00023036-exon-sc0000439-1575043694:134486..134738TCONS_00023036-exon-sc0000439-1575043694:134486..134738Clytia hemisphaericaexon
TCONS_00023036-exon-sc0000439-1491911889:134950..135758TCONS_00023036-exon-sc0000439-1491911889:134950..135758Clytia hemisphaericaexon
TCONS_00023036-exon-sc0000439-1510915933:134950..135758TCONS_00023036-exon-sc0000439-1510915933:134950..135758Clytia hemisphaericaexon
TCONS_00023036-exon-sc0000439-1575043694:134950..135758TCONS_00023036-exon-sc0000439-1575043694:134950..135758Clytia hemisphaericaexon
TCONS_00023036-exon-sc0000439-1491911889:136124..136568TCONS_00023036-exon-sc0000439-1491911889:136124..136568Clytia hemisphaericaexon
TCONS_00023036-exon-sc0000439-1510915933:136124..136568TCONS_00023036-exon-sc0000439-1510915933:136124..136568Clytia hemisphaericaexon
TCONS_00023036-exon-sc0000439-1575043694:136124..136568TCONS_00023036-exon-sc0000439-1575043694:136124..136568Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000439supercontigsc0000439:133345..136568 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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