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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023006 ID=TCONS_00023006|Name=TCONS_00023006|organism=Clytia hemisphaerica|type=transcript|length=1110bp
GTCTTTTCAACCCCAAAATGTCCGGCTGCAAACTGACAATGACCTCTTTC
AAAAATCTCATCTCTCAATTCTAACGGAACAACAACATATGATTTCCCTC
CTTTAAAATACTTCAACAAGCCGTCAACAATTCTCAATTTACTCAAATGA
CGTTTATAAACCAATGGAACCTCAACTTTTTCTCCCTCAAGATGATCAAA
AACGGCACGAATCTCGGCGTCGTTACGTTGCTGGGCAATGAATGAATGTT
TATCAAAGTCAGTAATATTTACAGTATTTACAGATGGTCTCCAACGTTTT
TCAGTTTTAATGTCTGTTTTTAAATTTCTGCTGATATAATCACCTATGAC
GTTGTCTTTTCCTTCAATGTAACGAATAATAATTCCTATGTTCTCAATAT
ATTCTATCCAGCGGTATCTTTTATTTACAATATCACGAAACGTGGATAGA
TAGGTCAGCGGTTTATGGTCGGTATAAACAATAACAATTTGATCTGTTAT
GTAAAATTCGCTCTTTTTAACTGAATAATAGAGCCCCAAAAGTTCTTTGT
CGGTAGTACAATAGTTCATTTCACAAATAGATAAAGAACGACCTCCGTAT
aaaactggacaaaaggttCCTTCGTTCTCTTGTGTCAGGGTAAACCCCAC
AGCCACATTTGAAGCATCTGTAAACAAAATGAATGGCTTTGTATAATCTG
GGTGGAgcaaaagaacattttcagatAAAAGTCTTTTGATCTCATTGAAA
CTTGTAGCGTGTTTTTCTGTCCATTGAAAACGAGTTCCTTTTTTCAATAG
TGAAAATAAATCTGCAGCATAATGGGAAAAATCTGGAATGAATTTCCTGA
AGAAAGCAACCATCCCCAGAAAAGAACGTAGTTCATTTAAATTTTCCGGT
GTTTTGATGTTCACAATTTcctcaatttttgttttctcaGCACGAATTCC
GTTCTGGTTAACTACATGTCCCAAAAATATCACttcacttttaaaaaatt
gactttttcgaaagtttatgTGTAAACCGTACTTTGCAAATAATTCAGTA
ATCTTTCGAATATGCTCAAAGTGATCTTCTTTCGTTTTTGAAAAGATCAA
GCCATCGTCG Run BLAST on NCBI protein sequence of TCONS_00023006-protein >TCONS_00023006-protein ID=TCONS_00023006-protein|Name=TCONS_00023006-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
DDGLIFSKTKEDHFEHIRKITELFAKYGLHINFRKSQFFKSEVIFLGHVV
NQNGIRAEKTKIEEIVNIKTPENLNELRSFLGMVAFFRKFIPDFSHYAAD
LFSLLKKGTRFQWTEKHATSFNEIKRLLSENVLLLHPDYTKPFILFTDAS
NVAVGFTLTQENEGTFCPVLYGGRSLSICEMNYCTTDKELLGLYYSVKKS
EFYITDQIVIVYTDHKPLTYLSTFRDIVNKRYRWIEYIENIGIIIRYIEG
KDNVIGDYISRNLKTDIKTEKRWRPSVNTVNITDFDKHSFIAQQRNDAEI
RAVFDHLEGEKVEVPLVYKRHLSKLRIVDGLLKYFKGGKSYVVVPLELRD
EIFERGHCQFAAGHFGVEK Run BLAST on NCBI transcript from alignment at sc0000438:77988..79097 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023006 ID=TCONS_00023006|Name=TCONS_00023006|organism=Clytia hemisphaerica|type=transcript|length=1110bp|location=Sequence derived from alignment at sc0000438:77988..79097 (Clytia hemisphaerica)
CGACGATGGCTTGATCTTTTCAAAAACGAAAGAAGATCACTTTGAGCATA
TTCGAAAGATTACTGAATTATTTGCAAAGTACGGTTTACAcataaacttt
cgaaaaagtcaattttttaaaagtgaaGTGATATTTTTGGGACATGTAGT
TAACCAGAACGGAATTCGTGCtgagaaaacaaaaattgaggAAATTGTGA
ACATCAAAACACCGGAAAATTTAAATGAACTACGTTCTTTTCTGGGGATG
GTTGCTTTCTTCAGGAAATTCATTCCAGATTTTTCCCATTATGCTGCAGA
TTTATTTTCACTATTGAAAAAAGGAACTCGTTTTCAATGGACAGAAAAAC
ACGCTACAAGTTTCAATGAGATCAAAAGACTTTTatctgaaaatgttctt
ttgcTCCACCCAGATTATACAAAGCCATTCATTTTGTTTACAGATGCTTC
AAATGTGGCTGTGGGGTTTACCCTGACACAAGAGAACGAAGGaacctttt
gtccagttttATACGGAGGTCGTTCTTTATCTATTTGTGAAATGAACTAT
TGTACTACCGACAAAGAACTTTTGGGGCTCTATTATTCAGTTAAAAAGAG
CGAATTTTACATAACAGATCAAATTGTTATTGTTTATACCGACCATAAAC
CGCTGACCTATCTATCCACGTTTCGTGATATTGTAAATAAAAGATACCGC
TGGATAGAATATATTGAGAACATAGGAATTATTATTCGTTACATTGAAGG
AAAAGACAACGTCATAGGTGATTATATCAGCAGAAATTTAAAAACAGACA
TTAAAACTGAAAAACGTTGGAGACCATCTGTAAATACTGTAAATATTACT
GACTTTGATAAACATTCATTCATTGCCCAGCAACGTAACGACGCCGAGAT
TCGTGCCGTTTTTGATCATCTTGAGGGAGAAAAAGTTGAGGTTCCATTGG
TTTATAAACGTCATTTGAGTAAATTGAGAATTGTTGACGGCTTGTTGAAG
TATTTTAAAGGAGGGAAATCATATGTTGTTGTTCCGTTAGAATTGAGAGA
TGAGATTTTTGAAAGAGGTCATTGTCAGTTTGCAGCCGGACATTTTGGGG
TTGAAAAGAC Coding sequence (CDS) from alignment at sc0000438:77988..79097 >TCONS_00023006 ID=TCONS_00023006|Name=TCONS_00023006|organism=Clytia hemisphaerica|type=CDS|length=1107bp|location=Sequence derived from alignment at sc0000438:77988..79097 (Clytia hemisphaerica)
GACGATGGCTTGATCTTTTCAAAAACGAAAGAAGATCACTTTGAGCATAT
TCGAAAGATTACTGAATTATTTGCAAAGTACGGTTTACAcataaactttc
gaaaaagtcaattttttaaaagtgaaGTGATATTTTTGGGACATGTAGTT
AACCAGAACGGAATTCGTGCtgagaaaacaaaaattgaggAAATTGTGAA
CATCAAAACACCGGAAAATTTAAATGAACTACGTTCTTTTCTGGGGATGG
TTGCTTTCTTCAGGAAATTCATTCCAGATTTTTCCCATTATGCTGCAGAT
TTATTTTCACTATTGAAAAAAGGAACTCGTTTTCAATGGACAGAAAAACA
CGCTACAAGTTTCAATGAGATCAAAAGACTTTTatctgaaaatgttcttt
tgcTCCACCCAGATTATACAAAGCCATTCATTTTGTTTACAGATGCTTCA
AATGTGGCTGTGGGGTTTACCCTGACACAAGAGAACGAAGGaaccttttg
tccagttttATACGGAGGTCGTTCTTTATCTATTTGTGAAATGAACTATT
GTACTACCGACAAAGAACTTTTGGGGCTCTATTATTCAGTTAAAAAGAGC
GAATTTTACATAACAGATCAAATTGTTATTGTTTATACCGACCATAAACC
GCTGACCTATCTATCCACGTTTCGTGATATTGTAAATAAAAGATACCGCT
GGATAGAATATATTGAGAACATAGGAATTATTATTCGTTACATTGAAGGA
AAAGACAACGTCATAGGTGATTATATCAGCAGAAATTTAAAAACAGACAT
TAAAACTGAAAAACGTTGGAGACCATCTGTAAATACTGTAAATATTACTG
ACTTTGATAAACATTCATTCATTGCCCAGCAACGTAACGACGCCGAGATT
CGTGCCGTTTTTGATCATCTTGAGGGAGAAAAAGTTGAGGTTCCATTGGT
TTATAAACGTCATTTGAGTAAATTGAGAATTGTTGACGGCTTGTTGAAGT
ATTTTAAAGGAGGGAAATCATATGTTGTTGTTCCGTTAGAATTGAGAGAT
GAGATTTTTGAAAGAGGTCATTGTCAGTTTGCAGCCGGACATTTTGGGGT
TGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023006-exon-sc0000438-1491911889:77988..79097 | TCONS_00023006-exon-sc0000438-1491911889:77988..79097 | Clytia hemisphaerica | exon |
| TCONS_00023006-exon-sc0000438-1510915933:77988..79097 | TCONS_00023006-exon-sc0000438-1510915933:77988..79097 | Clytia hemisphaerica | exon |
| TCONS_00023006-exon-sc0000438-1575043694:77988..79097 | TCONS_00023006-exon-sc0000438-1575043694:77988..79097 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000438 | supercontig | sc0000438:77988..79097 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
BLAST of TCONS_00023006 vs. Swiss-Prot (Human)
Match: RTL1 (Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3) HSP 1 Score: 93.5893 bits (231), Expect = 1.325e-20 Identity = 58/191 (30.37%), Postives = 94/191 (49.21%), Query Frame = -2
Query: 537 LIFSKTKEDHFEHIRKITELFAKYGLHINFRKSQFFKSEVIFLGHVVNQNGIRAEKTKIEEIVNIKTPENLNELRSFLGMVAFFRKFIPDFSHYAADLFSLLKKGTRFQWTEKHATSFNEIKRLLSENVLLLHPDYTKPFILFTDASNVAVGFTLTQENEGT---FCPVLYGGRSLSICEMNYCTTDKELL 1100
LI+S ++E+H H+R++ F + ++ + KSQF + V FLG VV G++ K + I TP + LR+F+ V +R F+ FS A L L +F W + +F +KR + LL HP PF L T + A+ +L Q ++ T C Y R++S E+ Y + ++L
Sbjct: 736 LIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSYQFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFY-SRNISPIEVEYSQAEMKIL 925
The following BLAST results are available for this feature:
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