TCONS_00023006-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00023006-protein
Unique NameTCONS_00023006-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00023006-protein ID=TCONS_00023006-protein|Name=TCONS_00023006-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
DDGLIFSKTKEDHFEHIRKITELFAKYGLHINFRKSQFFKSEVIFLGHVV
NQNGIRAEKTKIEEIVNIKTPENLNELRSFLGMVAFFRKFIPDFSHYAAD
LFSLLKKGTRFQWTEKHATSFNEIKRLLSENVLLLHPDYTKPFILFTDAS
NVAVGFTLTQENEGTFCPVLYGGRSLSICEMNYCTTDKELLGLYYSVKKS
EFYITDQIVIVYTDHKPLTYLSTFRDIVNKRYRWIEYIENIGIIIRYIEG
KDNVIGDYISRNLKTDIKTEKRWRPSVNTVNITDFDKHSFIAQQRNDAEI
RAVFDHLEGEKVEVPLVYKRHLSKLRIVDGLLKYFKGGKSYVVVPLELRD
EIFERGHCQFAAGHFGVEK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012931XLOC_012931Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00023006TCONS_00023006Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.270coord: 1..54
e-value: 2.5E-14
score: 52.7
NoneNo IPR availableGENE3D3.30.70.270coord: 55..182
e-value: 5.2E-39
score: 132.6
NoneNo IPR availableCDDcd09274RNase_HI_RT_Ty3coord: 144..262
e-value: 6.72623E-34
score: 121.831
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 1..247
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 1..49
e-value: 4.0E-7
score: 29.7
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..50
score: 12.278

Blast
[Close]
BLAST of TCONS_00023006-protein vs. Swiss-Prot (Human)
Match: RTL1 (Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 9.542e-21
Identity = 58/191 (30.37%), Postives = 94/191 (49.21%), Query Frame = 0 
Query:    4 LIFSKTKEDHFEHIRKITELFAKYGLHINFRKSQFFKSEVIFLGHVVNQNGIRAEKTKIEEIVNIKTPENLNELRSFLGMVAFFRKFIPDFSHYAADLFSLLKKGTRFQWTEKHATSFNEIKRLLSENVLLLHPDYTKPFILFTDASNVAVGFTLTQENEGT---FCPVLYGGRSLSICEMNYCTTDKELL 191
            LI+S ++E+H  H+R++   F  + ++ +  KSQF +  V FLG VV   G++  K  +  I    TP +   LR+F+  V  +R F+  FS  A  L   L    +F W  +   +F  +KR   +  LL HP    PF L T  +  A+  +L Q ++ T    C   Y  R++S  E+ Y   + ++L
Sbjct:  736 LIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSYQFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFY-SRNISPIEVEYSQAEMKIL 925
The following BLAST results are available for this feature:
BLAST of TCONS_00023006-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RTL19.542e-2130.37Retrotransposon-like protein 1 OS=Homo sapiens GN=... [more]
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