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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022983 ID=TCONS_00022983|Name=TCONS_00022983|organism=Clytia hemisphaerica|type=transcript|length=1330bpRun BLAST on NCBI transcript from alignment at sc0000437:176052..185934- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022983 ID=TCONS_00022983|Name=TCONS_00022983|organism=Clytia hemisphaerica|type=transcript|length=9883bp|location=Sequence derived from alignment at sc0000437:176052..185934- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00022983 vs. Swiss-Prot (Human)
Match: BHMT1 (Betaine--homocysteine S-methyltransferase 1 OS=Homo sapiens GN=BHMT PE=1 SV=2) HSP 1 Score: 337.035 bits (863), Expect = 3.964e-111 Identity = 160/351 (45.58%), Postives = 224/351 (63.82%), Query Frame = 3
Query: 129 KNILDRLNEGEVIIGDGGYTHELEQRGYVTSGLYTPEVVVEHPSAVKELHKEFALSGADVLQAFVFYGNDDKL-NNGRNESNLLNGEEINNAGCQLVSKVAKDHGCFVALPLVTTEAYSQKKGKELVQKEFLSQINIFKNYEVDLLISEFMSSVEEAEWAIEVMKTLNKPIASTLCIDQQGDQNGISLQECALRLAKAGADIIGVNCRYEPSVAVESIRIMKEACEKESLNVHYMTQPCGYRTADAPTLGMTNVPEAPLAMESRQISRWEAQKFAREAYEAGVRYIGGCCGFKAYHIRAMAEELSDITKKLPQNSRSKNA--ESLKHHRLTEFQKRANKDYWYNLAPKDGR 1172
K IL+RLN GE++IGDGG+ LE+RGYV +G +TPE VEHP AV++LH+EF +G++V+Q F FY ++DKL N G ++G+E+N A C + +VA + VA + T +Y K + V+K FL Q+ +F VD LI+E+ VEEA WA+E + KP+A+T+CI +GD +G+ ECA+RL KAGA IIGVNC ++P+++++++++MKE E L H M+QP Y T D G ++PE P +E R +RW+ QK+AREAY GVRYIGGCCGF+ YHIRA+AEEL+ LP S + L H + RA K+YW NL GR
Sbjct: 11 KGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAACDIARQVADEGDALVAGGVSQTPSYLSCKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASGKPVAATMCIGPEGDLHGVPPGECAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAARLKAHLMSQPLAYHTPDCNKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWVRARARKEYWENLRIASGR 361 The following BLAST results are available for this feature:
BLAST of TCONS_00022983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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