TCONS_00022951 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022951
Unique NameTCONS_00022951
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1774

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022951 ID=TCONS_00022951|Name=TCONS_00022951|organism=Clytia hemisphaerica|type=transcript|length=1774bp
TGGAAACGAATTCATTCAATTCATCGTCTGGTTAACTACAGcaataagaa
tatcgaaaaaAATGGCATCAATGGCGAGTCGGAAAAACAAAGCAAAGAAG
ACTCCAACACAACCTGAAATGTATACGGGCATGATGAAGAgcttaaaaca
aaaaacaaaatcacaAGGTTCATCATCAACAGCAGATCCGCCGTCAACAA
ATTATAACAGAATTTCAAACTTGATTCAAAATATGTTATCTGAACGTACA
AAAGATCTTCGAACAGCAACAGTCGAATACCACACCATTCCCGTCACGGC
TGAAGATAGTCGAGCAAAATTGATTGCAGAACAAGCCACGTACAATGAAC
TTCATGCTAATATAGAAATGAAACTATTCGAGGTCGACGAGGACGCTCCG
GAAGTACCGGAACGGGAAGATGATTTTGAAGTTCCGTTGTCGGATTATTC
CCGCACCGgttatttttttgagaaagccGGTATCGGGTTCGGACAAGAAG
AAACGTATCGCATTTTGTTAGGTTTGAAGTCTCTTGCCATGGAGTGCATG
TTTGTTCATGTGCGATTTTGGGGAAAAATACTCGGTATCAAGTCTAACTA
TTATATTGCTGAAACAGAATTCAGAGAAgGTGAGGGCGATGCTGTACAAC
CAGAAACTAGTGAAGTTTATTCTGAACAAGTACCACAGCACTATACTCAA
ATAAACATTGAATCCGATATTGAGGAACCGGAAGAAGATGAGGGATTACC
AAAACCCGATTGGAAGGAACCGGAACCGGTGCAAGCAGAAGAACATCATC
ATGGTGCTAACCGTTATGTTTATTTCGTTTGCAGTAAATTAGGTGAACCA
TGGGTTAAACTACCACACGTTACACCAACCGAGATTGCCCAATCACGTAA
AATCACTAAATTACTGACCGGTAACCTAGAGCAACCAATTGAAAGTTATC
CAAAATTTgttggaaaagaagaaaattaccTGCGTGCATTAATAGCGCGT
ATCTCTGCTGGCACCCAAATCTCACCGAGCGGGTATTATGTATTTGATGA
CGAGGGAAACGAAGAGGAGGATTCAGAGGAAGTGCATGATTCATACGTTG
TCAACATTGCATTTGATGGTATCCCTGTTCGccaattggaaaaaaattat
cgACAGAATTGGGTTCACCACGCCCAATATATTTTACCACAAGGGCGGTG
CTCGTGGTGGTCGCCCTCCAACTCATTCcgtgatgattttgatgaagatg
agGAATTCGATGACGAAAATATGATCCCTCAGGAAACTGGCCCCGTCCTA
TTAACCAACCTAGCCGGCGATAAAAATGCCAGTGGCAATCCAGCATGGTC
CGCAACCCTTACGTCTGAATACATGCCACAACATGGTATCTGTATTATGA
AGTCCAACCAGTGGCCAGGTGCATATGCATATTCCAATGGTAAACAATTC
GATAATGTATACATTGGTTGgggacaaaaatattcagcCGATGGCCACAA
TCAACCTTTCCCACCAGCCTCCATTGAAGAATATGTGAAATGTGCAGACG
TAATTGAAGAACAAGATCCATCACTTGAACAAGAAGAAGAAGCAAAATTG
ATGGAAGAATTAGCCAATAATGCAGATACTATTGTTAGAGCCAATGAGGC
GCCAGATGATGAAGACGACGATTAAGtttaattgctttttttaaggaTCT
ATTGTATACAagtttcttctgtttttcaaatatcaatcttttttttaatg
aataataaacaaacaaatgacGAA
Run BLAST on NCBI

protein sequence of TCONS_00022951-protein

>TCONS_00022951-protein ID=TCONS_00022951-protein|Name=TCONS_00022951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp
GNEFIQFIVWLTTAIRISKKMASMASRKNKAKKTPTQPEMYTGMMKSLKQ
KTKSQGSSSTADPPSTNYNRISNLIQNMLSERTKDLRTATVEYHTIPVTA
EDSRAKLIAEQATYNELHANIEMKLFEVDEDAPEVPEREDDFEVPLSDYS
RTGYFFEKAGIGFGQEETYRILLGLKSLAMECMFVHVRFWGKILGIKSNY
YIAETEFREGEGDAVQPETSEVYSEQVPQHYTQINIESDIEEPEEDEGLP
KPDWKEPEPVQAEEHHHGANRYVYFVCSKLGEPWVKLPHVTPTEIAQSRK
ITKLLTGNLEQPIESYPKFVGKEENYLRALIARISAGTQISPSGYYVFDD
EGNEEEDSEEVHDSYVVNIAFDGIPVRQLEKNYRQNWVHHAQYILPQGRC
SWWSPSNSFRDDFDEDEEFDDENMIPQETGPVLLTNLAGDKNASGNPAWS
ATLTSEYMPQHGICIMKSNQWPGAYAYSNGKQFDNVYIGWGQKYSADGHN
QPFPPASIEEYVKCADVIEEQDPSLEQEEEAKLMEELANNADTIVRANEA
PDDEDDD
Run BLAST on NCBI

transcript from alignment at sc0000437:19151..23856-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022951 ID=TCONS_00022951|Name=TCONS_00022951|organism=Clytia hemisphaerica|type=transcript|length=4706bp|location=Sequence derived from alignment at sc0000437:19151..23856- (Clytia hemisphaerica)
TGGAAACGAATTCATTCAATTCATCGTCTGGTTAACTACAGCAATAAGAA
TATCGAAAAAAATGGCATCAATGGCGAGTCGGAAAAACAAAGCAAAGAAG
ACTCCAACACAACCTGAAATGTATACGGGCATGATGAAGAGCTTAAAACA
AAAAACAAAATCACAAGGTTCATCATCAACAGCAGATCCGCCGTCAACAA
ATTATAACAGAATTTCAAACTTGATTCAAAATATGTTATCTGAACGTACA
AAAGATCTTCGAACAGCAACAGTCGAATACCACACCATTCCCGTCACGGC
TGAAGATAGTCGAGCAAAATTGATTGCAGAACAAGCCACANTTCCCGTCA
CGGCTGAAGATAGTCGAGCAAAATCGATTGCAGAACAAGCCACGTACAAT
GAACTTCATGCTAATATAGAAATGAAACTATTCGAGGTCGACGAGGACGC
TCCGGAAGTACCGGAACGGGAAGATGATTTTGAAGTTCCGTTGTCGGATT
ATTCCCGCACCGGTTATTTTTTTGAGAAAGCCGGTATCGGGTTCGGACAA
GAAGAAACGTATCGCATTTTGTTAGGTTTGAAGTCTCTTGCCATGGAGTG
CATGTTTGTTCATGTGCGATTTTGGGGAAAAATACTCGGTATCAAGTCTA
ACTATTATATTGCTGAAACAGAATTCAGAGAAGGTAATTAATTTTCTTTT
GTTTTAAACTTTAATGTTTTTTGTAGGAGCATCGAAAATTTATGTGCTTA
GCTTGTTTAGTCTTTTTTAAAAGCCTAAAAATGTTCATGAAATCTTCAGT
TATCTCAAACTTCCTCTTTTTCGCAACAAATTATTTGGTCCCTTGCGATA
TTATGGATAATAAAACTCGAATAGAAAACCAGAGATGATTTTAAAATCCT
GTGCTATATCTCTTGCGATTAATATTTCCTTCAAGATTTTCTTCTGCATT
GACTAATATAGCAGAAAAACTGTCGGCTAAAGCAGGCTTGGCGGAAGCGG
GGAGACTGGGGAGACTTCAGCCTCCCCACTTTTATCCAAATAAGACTTTT
TCACAAAGTCCTAGCGAATTTTATCTCATTTTGAGACTTCAGCCTCCCCA
CTTTTATCCAAATAAGACTTTTTCACAAAGTCCTAGCGAATTTTATCTCA
TTTTGAGACTTCAGCCTCCTCACTTTTATGGTTGTTCCGCCGGGCCTGTA
AGCCAAAAAAGAAGTTTACCACGAGACTGAGAAATTCACATACTTACGTT
ACACGAAAAAAACAACAAGAAAAGTATTATCTGTTTTTACACCCCTGTGT
CACAGACCCGCTGGGACCCCAACCCCGCTGAAAAACTTTGTCCCTGTGAG
ACAGGGGTATCTGTATTTATATTTTCTCTATCTGCATCCGATAGGTGAGG
GCGATGCTGTACAACCAGAAACTAGTGAAGTTTATTCTGAACAAGTACCA
CAGCACTATACTCAAATAAACATCNCGATGCTGTACAACCAGAAACTAGT
GAAGTTTATTCTGAACAAGTACCACAACACTATACTCAAATAAACATTGA
ATCCGATATTGAGGAACCGGAAGAAGATGAGGGATTACCAAAACCCGATT
GGAAGGAACCGGAACCGGTGCAAGCAGAAGAACATCATCATGGTGCTAAC
CGTTATGTTTATTTCGTTTGCAGTAAATTAGGTATGTAGTTTAGATGTAG
GCTTCTGCTCATCCTCTTGCGAAAAAGGTTTTTCATAAGTTTCTATATAG
GAAGTATATATCTATTCATGATATGCACCATTGCAACGTCTTCGTTGGAC
CCCACAGCTGTATGGTTGAAAGTGACGTAATGATTGATTTTACGTCACTT
TCAACCAATCCGCTGTTGGGTCCGTGGAAGATATTGCAATGGTGCATATC
ATGAATAGCGTGGATCTATAGAGGTCTGCGATTCAGACTAGTTTAGACGA
TGCTAGCATTCTTTAGGAACAAGCGCAGGAAATATATATGTGCCGATATT
ACTTACAGCCAGCGCAGAGGTTTACAGGAAAAAATGGCGGTAGAGTATAG
AGCACTATAAACACCTCCGCCACTGCTTACTCCACTCCGGGCTAACCACC
GTTTTCAAATATATCCTGCCTACTAAATCATTACTTTTTAGTGATCGATA
AGGTAGTTTAGCATGTAGTTTACTCGTCCAGACCCAAATCATTTGTTTTG
TAATACATAGTGAGATTGTAGCTTGCTTTTGTCGTGAGTTAGGTATTTAA
GTAATTAGGATTTGGAGTATATTTAATTATTTTTCACCAGATCTACCATT
CTTTACATTTTTAGATTCTATTAAGATGTTACATTCTGCATTGTTATTAT
AAAAAACTTGTCCCTAGCCCCCACCCCACAAATATTTCTACTTCTCTTCT
AACAAAAACCTTTCTTAAAAAAAAAGAGGCCTATGTCTGCGAATGGAAAC
TACCCTGGGTATTCACACGCAATTATCAGTTTAGTTTCTGTCAAATGGAT
AGACAAACATTCATCTCAGAATTTAGGTAAAACGAATTTGATGAAAGCTG
GCTGATTCAAAAAGCCCAAACATCTCAAACTGAAATTTTAGTATAGTCTT
AACCGCAGACCTCTACAAGGCTACAAAACCACAGGCTGTATAGGGAGCTA
TTCTATAGGGTACTAAGGGACTATGAGGAGTACAAATCCGTTTGCAGATG
TCATCAGCCTACTTTTAGTAGATTTCCTCCATTTATGAATGATTCTGTTG
TAGTAATTAAGATTAAAAAAGTATCACGCTTTGAAGACAGACCTTGAAAA
GAGCTTTCCAATGAACCCAAACATGACCTTTTTGCTTTAGCCGAGAAATT
TGCATTTGAAGATGACGCACCGTAGTTTTGAATAAAACCTTAAATTTCAG
TTTCCCATAGTACTGAAAGAGTTAAGATAAAACCGCTCAAACTTTATTAT
TATTTTTTAACAACATAGGTGAACCATGGGTTAAACTACCACACGTTACA
CCAACCGAGATTGCCCAATCACGTAAAATCACTAAATTACTGACCGGTAA
CCTAGAGCAACCAATTGAAAGTTATCCAAAATTTGTTGGAAAAGAAGAAA
ATTACCTGCGTGCATTAATAGCGCGTATCTCTGCTGGCACCCAAATCTCA
CCGAGCGGGTATTATGTATTTGATGACGAGGGAAACGAAGAGGAGGATTC
AGAGGAAGTGCATGATTCATACGTTGTCAACATTGCATTTGATGGTATCC
CTGTTCGCCAATTGGAAAAAAATTATCGACAGAATTGGGTTCACCACGCC
CAATATATTTTACCACAAGGGCGGTGCTCGTGGTGGTCGCCCTCCAACTC
ATTCCGTGATGATTTTGATGAAGATGAGGTATATTTTTTTATATTCTTTC
TTCAACTTGGGCATAAACAAAAATTGCAAAATTCATCTAATAATCTAAAG
TCACAATCATTAATGTTTTGTACTTTACGAAGCAGAAGTGAGCACAATTA
TTTAATAAATGATGACTTTTGGGTGATTGGCATTGGCAATCTCGTACCAA
GGGCCTTTGCACCACTTTTTGATTTACTGATGAACGTGATATAACTTTTT
AGAATCATAAAAAAGTAAGCTAAAGGGATTGGGCTCGACTTTAAGAGTAA
AGAGACAAAAATGTCCTCTAGCTTGATATGTTAATCAAAACAACCTGTTC
CCAACGCACATGCAAGTGAAAGAGAAGTAGAAAAAGAAAAAACCTTTATA
GTCTGAATAGTAAAACACCCTCTTCTCACAGACCCGGTAGAATTTTTTCA
GTCAGTGGGGATAAAAATAACGGACTTAAACTCGATGGGGATCGATATTC
CCAATTTTTTATGGCCAAGAATTTCAATAATTTTGTTTTCCAAGTCAAAT
TCAGTAGGATGGGAAAAATTGTAAATATTTTGCAGTGAGGATTGGTTTAT
TTGATTATTTTCAGTGGGGACAAAAATTGGAGGATAATTTTCCACCGGGG
CGATATTATGGACAATTTTTCCAGTGGGTGTGTCAGAAGGGGTTGTTCTT
CGCGTGTCACATTGCAAGGGTGCATATAATGAATTGCCTGAAACCTATCC
GGTTCATTGTTTCCAATTAGCTTTGATTCGTCTCCTTGACATAACATGAT
AACAATACATCATTATATTTTAAAACTTTGACAGGAATTCGATGACGAAA
ATATGATCCCTCAGGAAACTGGCCCCGTCCTATTAACCAACCTAGCCGGC
GATAAAAATGCCAGTGGCAATCCAGCATGGTCCGCAACCCTTACGTCTGA
ATACATGCCACAACATGGTATCTGTATTATGAAGTCCAACCAGTGGCCAG
GTGCATATGCATATTCCAATGGTAAACAATTCGATAATGTATACATTGGT
TGGGGACAAAAATATTCAGCCGATGGCCACAATCAACCTTTCCCACCAGC
CTCCATTGAAGAATATGTGAAATGTGCAGACGTAATTGAAGAACAAGATC
CATCACTTGAACAAGAAGAAGAAGCAAAATTGATGGAAGAATTAGCCAAT
AATGCAGATACTATTGTTAGAGCCAATGAGGCGCCAGATGATGAAGACGA
CGATTAAGTTTAATTGCTTTTTTTAAGGATCTATTGTATACAAGTTTCTT
CTGTTTTTCAAATATCAATCTTTTTTTTAATGAATAATAAACAAACAAAT
GACGAA

Coding sequence (CDS) from alignment at sc0000437:19151..23856-

>TCONS_00022951 ID=TCONS_00022951|Name=TCONS_00022951|organism=Clytia hemisphaerica|type=CDS|length=10044bp|location=Sequence derived from alignment at sc0000437:19151..23856- (Clytia hemisphaerica)
GAATTCGATGACGAAAATATGATCCCTCAGGAAACTGGCCCCGTCCTATT
AACCAACCTAGCCGGCGATAAAAATGCCAGTGGCAATCCAGCATGGTCCG
CAACCCTTACGTCTGAATACATGCCACAACATGGTATCTGTATTATGAAG
TCCAACCAGTGGCCAGGTGCATATGCATATTCCAATGGTAAACAATTCGA
TAATGTATACATTGGTTGGGGACAAAAATATTCAGCCGATGGCCACAATC
AACCTTTCCCACCAGCCTCCATTGAAGAATATGTGAAATGTGCAGACGTA
ATTGAAGAACAAGATCCATCACTTGAACAAGAAGAAGAAGCAAAATTGAT
GGAAGAATTAGCCAATAATGCAGATACTATTGTTAGAGCCAATGAGGCGC
CAGATGATGAAGACGACGATTAAGTGAACCATGGGTTAAACTACCACACG
TTACACCAACCGAGATTGCCCAATCACGTAAAATCACTAAATTACTGACC
GGTAACCTAGAGCAACCAATTGAAAGTTATCCAAAATTTGTTGGAAAAGA
AGAAAATTACCTGCGTGCATTAATAGCGCGTATCTCTGCTGGCACCCAAA
TCTCACCGAGCGGGTATTATGTATTTGATGACGAGGGAAACGAAGAGGAG
GATTCAGAGGAAGTGCATGATTCATACGTTGTCAACATTGCATTTGATGG
TATCCCTGTTCGCCAATTGGAAAAAAATTATCGACAGAATTGGGTTCACC
ACGCCCAATATATTTTACCACAAGGGCGGTGCTCGTGGTGGTCGCCCTCC
AACTCATTCCGTGATGATTTTGATGAAGATGAGATTGAATCCGATATTGA
GGAACCGGAAGAAGATGAGGGATTACCAAAACCCGATTGGAAGGAACCGG
AACCGGTGCAAGCAGAAGAACATCATCATGGTGCTAACCGTTATGTTTAT
TTCGTTTGCAGTAAATTAGGTGAGGGCGATGCTGTACAACCAGAAACTAG
TGAAGTTTATTCTGAACAAGTACCACAGCACTATACTCAAATAAACGTAC
AATGAACTTCATGCTAATATAGAAATGAAACTATTCGAGGTCGACGAGGA
CGCTCCGGAAGTACCGGAACGGGAAGATGATTTTGAAGTTCCGTTGTCGG
ATTATTCCCGCACCGGTTATTTTTTTGAGAAAGCCGGTATCGGGTTCGGA
CAAGAAGAAACGTATCGCATTTTGTTAGGTTTGAAGTCTCTTGCCATGGA
GTGCATGTTTGTTCATGTGCGATTTTGGGGAAAAATACTCGGTATCAAGT
CTAACTATTATATTGCTGAAACAGAATTCAGAGAAGGGAAACGAATTCAT
TCAATTCATCGTCTGGTTAACTACAGCAATAAGAATATCGAAAAAAATGG
CATCAATGGCGAGTCGGAAAAACAAAGCAAAGAAGACTCCAACACAACCT
GAAATGTATACGGGCATGATGAAGAGCTTAAAACAAAAAACAAAATCACA
AGGTTCATCATCAACAGCAGATCCGCCGTCAACAAATTATAACAGAATTT
CAAACTTGATTCAAAATATGTTATCTGAACGTACAAAAGATCTTCGAACA
GCAACAGTCGAATACCACACCATTCCCGTCACGGCTGAAGATAGTCGAGC
AAAATTGATTGCAGAACAAGCCACGAATTCGATGACGAAAATATGATCCC
TCAGGAAACTGGCCCCGTCCTATTAACCAACCTAGCCGGCGATAAAAATG
CCAGTGGCAATCCAGCATGGTCCGCAACCCTTACGTCTGAATACATGCCA
CAACATGGTATCTGTATTATGAAGTCCAACCAGTGGCCAGGTGCATATGC
ATATTCCAATGGTAAACAATTCGATAATGTATACATTGGTTGGGGACAAA
AATATTCAGCCGATGGCCACAATCAACCTTTCCCACCAGCCTCCATTGAA
GAATATGTGAAATGTGCAGACGTAATTGAAGAACAAGATCCATCACTTGA
ACAAGAAGAAGAAGCAAAATTGATGGAAGAATTAGCCAATAATGCAGATA
CTATTGTTAGAGCCAATGAGGCGCCAGATGATGAAGACGACGATTAAGTG
AACCATGGGTTAAACTACCACACGTTACACCAACCGAGATTGCCCAATCA
CGTAAAATCACTAAATTACTGACCGGTAACCTAGAGCAACCAATTGAAAG
TTATCCAAAATTTGTTGGAAAAGAAGAAAATTACCTGCGTGCATTAATAG
CGCGTATCTCTGCTGGCACCCAAATCTCACCGAGCGGGTATTATGTATTT
GATGACGAGGGAAACGAAGAGGAGGATTCAGAGGAAGTGCATGATTCATA
CGTTGTCAACATTGCATTTGATGGTATCCCTGTTCGCCAATTGGAAAAAA
ATTATCGACAGAATTGGGTTCACCACGCCCAATATATTTTACCACAAGGG
CGGTGCTCGTGGTGGTCGCCCTCCAACTCATTCCGTGATGATTTTGATGA
AGATGAGATTGAATCCGATATTGAGGAACCGGAAGAAGATGAGGGATTAC
CAAAACCCGATTGGAAGGAACCGGAACCGGTGCAAGCAGAAGAACATCAT
CATGGTGCTAACCGTTATGTTTATTTCGTTTGCAGTAAATTAGGTGAGGG
CGATGCTGTACAACCAGAAACTAGTGAAGTTTATTCTGAACAAGTACCAC
AGCACTATACTCAAATAAACGTACAATGAACTTCATGCTAATATAGAAAT
GAAACTATTCGAGGTCGACGAGGACGCTCCGGAAGTACCGGAACGGGAAG
ATGATTTTGAAGTTCCGTTGTCGGATTATTCCCGCACCGGTTATTTTTTT
GAGAAAGCCGGTATCGGGTTCGGACAAGAAGAAACGTATCGCATTTTGTT
AGGTTTGAAGTCTCTTGCCATGGAGTGCATGTTTGTTCATGTGCGATTTT
GGGGAAAAATACTCGGTATCAAGTCTAACTATTATATTGCTGAAACAGAA
TTCAGAGAAGGGAAACGAATTCATTCAATTCATCGTCTGGTTAACTACAG
CAATAAGAATATCGAAAAAAATGGCATCAATGGCGAGTCGGAAAAACAAA
GCAAAGAAGACTCCAACACAACCTGAAATGTATACGGGCATGATGAAGAG
CTTAAAACAAAAAACAAAATCACAAGGTTCATCATCAACAGCAGATCCGC
CGTCAACAAATTATAACAGAATTTCAAACTTGATTCAAAATATGTTATCT
GAACGTACAAAAGATCTTCGAACAGCAACAGTCGAATACCACACCATTCC
CGTCACGGCTGAAGATAGTCGAGCAAAATTGATTGCAGAACAAGCCACGA
ATTCGATGACGAAAATATGATCCCTCAGGAAACTGGCCCCGTCCTATTAA
CCAACCTAGCCGGCGATAAAAATGCCAGTGGCAATCCAGCATGGTCCGCA
ACCCTTACGTCTGAATACATGCCACAACATGGTATCTGTATTATGAAGTC
CAACCAGTGGCCAGGTGCATATGCATATTCCAATGGTAAACAATTCGATA
ATGTATACATTGGTTGGGGACAAAAATATTCAGCCGATGGCCACAATCAA
CCTTTCCCACCAGCCTCCATTGAAGAATATGTGAAATGTGCAGACGTAAT
TGAAGAACAAGATCCATCACTTGAACAAGAAGAAGAAGCAAAATTGATGG
AAGAATTAGCCAATAATGCAGATACTATTGTTAGAGCCAATGAGGCGCCA
GATGATGAAGACGACGATTAAGTGAACCATGGGTTAAACTACCACACGTT
ACACCAACCGAGATTGCCCAATCACGTAAAATCACTAAATTACTGACCGG
TAACCTAGAGCAACCAATTGAAAGTTATCCAAAATTTGTTGGAAAAGAAG
AAAATTACCTGCGTGCATTAATAGCGCGTATCTCTGCTGGCACCCAAATC
TCACCGAGCGGGTATTATGTATTTGATGACGAGGGAAACGAAGAGGAGGA
TTCAGAGGAAGTGCATGATTCATACGTTGTCAACATTGCATTTGATGGTA
TCCCTGTTCGCCAATTGGAAAAAAATTATCGACAGAATTGGGTTCACCAC
GCCCAATATATTTTACCACAAGGGCGGTGCTCGTGGTGGTCGCCCTCCAA
CTCATTCCGTGATGATTTTGATGAAGATGAGATTGAATCCGATATTGAGG
AACCGGAAGAAGATGAGGGATTACCAAAACCCGATTGGAAGGAACCGGAA
CCGGTGCAAGCAGAAGAACATCATCATGGTGCTAACCGTTATGTTTATTT
CGTTTGCAGTAAATTAGGTGAGGGCGATGCTGTACAACCAGAAACTAGTG
AAGTTTATTCTGAACAAGTACCACAGCACTATACTCAAATAAACGTACAA
TGAACTTCATGCTAATATAGAAATGAAACTATTCGAGGTCGACGAGGACG
CTCCGGAAGTACCGGAACGGGAAGATGATTTTGAAGTTCCGTTGTCGGAT
TATTCCCGCACCGGTTATTTTTTTGAGAAAGCCGGTATCGGGTTCGGACA
AGAAGAAACGTATCGCATTTTGTTAGGTTTGAAGTCTCTTGCCATGGAGT
GCATGTTTGTTCATGTGCGATTTTGGGGAAAAATACTCGGTATCAAGTCT
AACTATTATATTGCTGAAACAGAATTCAGAGAAGGGAAACGAATTCATTC
AATTCATCGTCTGGTTAACTACAGCAATAAGAATATCGAAAAAAATGGCA
TCAATGGCGAGTCGGAAAAACAAAGCAAAGAAGACTCCAACACAACCTGA
AATGTATACGGGCATGATGAAGAGCTTAAAACAAAAAACAAAATCACAAG
GTTCATCATCAACAGCAGATCCGCCGTCAACAAATTATAACAGAATTTCA
AACTTGATTCAAAATATGTTATCTGAACGTACAAAAGATCTTCGAACAGC
AACAGTCGAATACCACACCATTCCCGTCACGGCTGAAGATAGTCGAGCAA
AATTGATTGCAGAACAAGCCACGAATTCGATGACGAAAATATGATCCCTC
AGGAAACTGGCCCCGTCCTATTAACCAACCTAGCCGGCGATAAAAATGCC
AGTGGCAATCCAGCATGGTCCGCAACCCTTACGTCTGAATACATGCCACA
ACATGGTATCTGTATTATGAAGTCCAACCAGTGGCCAGGTGCATATGCAT
ATTCCAATGGTAAACAATTCGATAATGTATACATTGGTTGGGGACAAAAA
TATTCAGCCGATGGCCACAATCAACCTTTCCCACCAGCCTCCATTGAAGA
ATATGTGAAATGTGCAGACGTAATTGAAGAACAAGATCCATCACTTGAAC
AAGAAGAAGAAGCAAAATTGATGGAAGAATTAGCCAATAATGCAGATACT
ATTGTTAGAGCCAATGAGGCGCCAGATGATGAAGACGACGATTAAGTGAA
CCATGGGTTAAACTACCACACGTTACACCAACCGAGATTGCCCAATCACG
TAAAATCACTAAATTACTGACCGGTAACCTAGAGCAACCAATTGAAAGTT
ATCCAAAATTTGTTGGAAAAGAAGAAAATTACCTGCGTGCATTAATAGCG
CGTATCTCTGCTGGCACCCAAATCTCACCGAGCGGGTATTATGTATTTGA
TGACGAGGGAAACGAAGAGGAGGATTCAGAGGAAGTGCATGATTCATACG
TTGTCAACATTGCATTTGATGGTATCCCTGTTCGCCAATTGGAAAAAAAT
TATCGACAGAATTGGGTTCACCACGCCCAATATATTTTACCACAAGGGCG
GTGCTCGTGGTGGTCGCCCTCCAACTCATTCCGTGATGATTTTGATGAAG
ATGAGATTGAATCCGATATTGAGGAACCGGAAGAAGATGAGGGATTACCA
AAACCCGATTGGAAGGAACCGGAACCGGTGCAAGCAGAAGAACATCATCA
TGGTGCTAACCGTTATGTTTATTTCGTTTGCAGTAAATTAGGTGAGGGCG
ATGCTGTACAACCAGAAACTAGTGAAGTTTATTCTGAACAAGTACCACAG
CACTATACTCAAATAAACGTACAATGAACTTCATGCTAATATAGAAATGA
AACTATTCGAGGTCGACGAGGACGCTCCGGAAGTACCGGAACGGGAAGAT
GATTTTGAAGTTCCGTTGTCGGATTATTCCCGCACCGGTTATTTTTTTGA
GAAAGCCGGTATCGGGTTCGGACAAGAAGAAACGTATCGCATTTTGTTAG
GTTTGAAGTCTCTTGCCATGGAGTGCATGTTTGTTCATGTGCGATTTTGG
GGAAAAATACTCGGTATCAAGTCTAACTATTATATTGCTGAAACAGAATT
CAGAGAAGGGAAACGAATTCATTCAATTCATCGTCTGGTTAACTACAGCA
ATAAGAATATCGAAAAAAATGGCATCAATGGCGAGTCGGAAAAACAAAGC
AAAGAAGACTCCAACACAACCTGAAATGTATACGGGCATGATGAAGAGCT
TAAAACAAAAAACAAAATCACAAGGTTCATCATCAACAGCAGATCCGCCG
TCAACAAATTATAACAGAATTTCAAACTTGATTCAAAATATGTTATCTGA
ACGTACAAAAGATCTTCGAACAGCAACAGTCGAATACCACACCATTCCCG
TCACGGCTGAAGATAGTCGAGCAAAATTGATTGCAGAACAAGCCACGAAT
TCGATGACGAAAATATGATCCCTCAGGAAACTGGCCCCGTCCTATTAACC
AACCTAGCCGGCGATAAAAATGCCAGTGGCAATCCAGCATGGTCCGCAAC
CCTTACGTCTGAATACATGCCACAACATGGTATCTGTATTATGAAGTCCA
ACCAGTGGCCAGGTGCATATGCATATTCCAATGGTAAACAATTCGATAAT
GTATACATTGGTTGGGGACAAAAATATTCAGCCGATGGCCACAATCAACC
TTTCCCACCAGCCTCCATTGAAGAATATGTGAAATGTGCAGACGTAATTG
AAGAACAAGATCCATCACTTGAACAAGAAGAAGAAGCAAAATTGATGGAA
GAATTAGCCAATAATGCAGATACTATTGTTAGAGCCAATGAGGCGCCAGA
TGATGAAGACGACGATTAAGTGAACCATGGGTTAAACTACCACACGTTAC
ACCAACCGAGATTGCCCAATCACGTAAAATCACTAAATTACTGACCGGTA
ACCTAGAGCAACCAATTGAAAGTTATCCAAAATTTGTTGGAAAAGAAGAA
AATTACCTGCGTGCATTAATAGCGCGTATCTCTGCTGGCACCCAAATCTC
ACCGAGCGGGTATTATGTATTTGATGACGAGGGAAACGAAGAGGAGGATT
CAGAGGAAGTGCATGATTCATACGTTGTCAACATTGCATTTGATGGTATC
CCTGTTCGCCAATTGGAAAAAAATTATCGACAGAATTGGGTTCACCACGC
CCAATATATTTTACCACAAGGGCGGTGCTCGTGGTGGTCGCCCTCCAACT
CATTCCGTGATGATTTTGATGAAGATGAGATTGAATCCGATATTGAGGAA
CCGGAAGAAGATGAGGGATTACCAAAACCCGATTGGAAGGAACCGGAACC
GGTGCAAGCAGAAGAACATCATCATGGTGCTAACCGTTATGTTTATTTCG
TTTGCAGTAAATTAGGTGAGGGCGATGCTGTACAACCAGAAACTAGTGAA
GTTTATTCTGAACAAGTACCACAGCACTATACTCAAATAAACGTACAATG
AACTTCATGCTAATATAGAAATGAAACTATTCGAGGTCGACGAGGACGCT
CCGGAAGTACCGGAACGGGAAGATGATTTTGAAGTTCCGTTGTCGGATTA
TTCCCGCACCGGTTATTTTTTTGAGAAAGCCGGTATCGGGTTCGGACAAG
AAGAAACGTATCGCATTTTGTTAGGTTTGAAGTCTCTTGCCATGGAGTGC
ATGTTTGTTCATGTGCGATTTTGGGGAAAAATACTCGGTATCAAGTCTAA
CTATTATATTGCTGAAACAGAATTCAGAGAAGGGAAACGAATTCATTCAA
TTCATCGTCTGGTTAACTACAGCAATAAGAATATCGAAAAAAATGGCATC
AATGGCGAGTCGGAAAAACAAAGCAAAGAAGACTCCAACACAACCTGAAA
TGTATACGGGCATGATGAAGAGCTTAAAACAAAAAACAAAATCACAAGGT
TCATCATCAACAGCAGATCCGCCGTCAACAAATTATAACAGAATTTCAAA
CTTGATTCAAAATATGTTATCTGAACGTACAAAAGATCTTCGAACAGCAA
CAGTCGAATACCACACCATTCCCGTCACGGCTGAAGATAGTCGAGCAAAA
TTGATTGCAGAACAAGCCACGAATTCGATGACGAAAATATGATCCCTCAG
GAAACTGGCCCCGTCCTATTAACCAACCTAGCCGGCGATAAAAATGCCAG
TGGCAATCCAGCATGGTCCGCAACCCTTACGTCTGAATACATGCCACAAC
ATGGTATCTGTATTATGAAGTCCAACCAGTGGCCAGGTGCATATGCATAT
TCCAATGGTAAACAATTCGATAATGTATACATTGGTTGGGGACAAAAATA
TTCAGCCGATGGCCACAATCAACCTTTCCCACCAGCCTCCATTGAAGAAT
ATGTGAAATGTGCAGACGTAATTGAAGAACAAGATCCATCACTTGAACAA
GAAGAAGAAGCAAAATTGATGGAAGAATTAGCCAATAATGCAGATACTAT
TGTTAGAGCCAATGAGGCGCCAGATGATGAAGACGACGATTAAGTGAACC
ATGGGTTAAACTACCACACGTTACACCAACCGAGATTGCCCAATCACGTA
AAATCACTAAATTACTGACCGGTAACCTAGAGCAACCAATTGAAAGTTAT
CCAAAATTTGTTGGAAAAGAAGAAAATTACCTGCGTGCATTAATAGCGCG
TATCTCTGCTGGCACCCAAATCTCACCGAGCGGGTATTATGTATTTGATG
ACGAGGGAAACGAAGAGGAGGATTCAGAGGAAGTGCATGATTCATACGTT
GTCAACATTGCATTTGATGGTATCCCTGTTCGCCAATTGGAAAAAAATTA
TCGACAGAATTGGGTTCACCACGCCCAATATATTTTACCACAAGGGCGGT
GCTCGTGGTGGTCGCCCTCCAACTCATTCCGTGATGATTTTGATGAAGAT
GAGATTGAATCCGATATTGAGGAACCGGAAGAAGATGAGGGATTACCAAA
ACCCGATTGGAAGGAACCGGAACCGGTGCAAGCAGAAGAACATCATCATG
GTGCTAACCGTTATGTTTATTTCGTTTGCAGTAAATTAGGTGAGGGCGAT
GCTGTACAACCAGAAACTAGTGAAGTTTATTCTGAACAAGTACCACAGCA
CTATACTCAAATAAACGTACAATGAACTTCATGCTAATATAGAAATGAAA
CTATTCGAGGTCGACGAGGACGCTCCGGAAGTACCGGAACGGGAAGATGA
TTTTGAAGTTCCGTTGTCGGATTATTCCCGCACCGGTTATTTTTTTGAGA
AAGCCGGTATCGGGTTCGGACAAGAAGAAACGTATCGCATTTTGTTAGGT
TTGAAGTCTCTTGCCATGGAGTGCATGTTTGTTCATGTGCGATTTTGGGG
AAAAATACTCGGTATCAAGTCTAACTATTATATTGCTGAAACAGAATTCA
GAGAAGGGAAACGAATTCATTCAATTCATCGTCTGGTTAACTACAGCAAT
AAGAATATCGAAAAAAATGGCATCAATGGCGAGTCGGAAAAACAAAGCAA
AGAAGACTCCAACACAACCTGAAATGTATACGGGCATGATGAAGAGCTTA
AAACAAAAAACAAAATCACAAGGTTCATCATCAACAGCAGATCCGCCGTC
AACAAATTATAACAGAATTTCAAACTTGATTCAAAATATGTTATCTGAAC
GTACAAAAGATCTTCGAACAGCAACAGTCGAATACCACACCATTCCCGTC
ACGGCTGAAGATAGTCGAGCAAAATTGATTGCAGAACAAGCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012904XLOC_012904Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022951-proteinTCONS_00022951-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022951-exon-sc0000437-1575043694:23518..23856TCONS_00022951-exon-sc0000437-1575043694:23518..23856Clytia hemisphaericaexon
TCONS_00022951-exon-sc0000437-1575043694:23174..23463TCONS_00022951-exon-sc0000437-1575043694:23174..23463Clytia hemisphaericaexon
TCONS_00022951-exon-sc0000437-1575043694:22386..22462TCONS_00022951-exon-sc0000437-1575043694:22386..22462Clytia hemisphaericaexon
TCONS_00022951-exon-sc0000437-1575043694:22176..22311TCONS_00022951-exon-sc0000437-1575043694:22176..22311Clytia hemisphaericaexon
TCONS_00022951-exon-sc0000437-1575043694:20479..20888TCONS_00022951-exon-sc0000437-1575043694:20479..20888Clytia hemisphaericaexon
TCONS_00022951-exon-sc0000437-1575043694:19151..19672TCONS_00022951-exon-sc0000437-1575043694:19151..19672Clytia hemisphaericaexon
TCONS_00022951-exon-sc0000437-1510915933:23518..23856TCONS_00022951-exon-sc0000437-1510915933:23518..23856Clytia hemisphaericaexon
TCONS_00022951-exon-sc0000437-1510915933:23174..23463TCONS_00022951-exon-sc0000437-1510915933:23174..23463Clytia hemisphaericaexon
TCONS_00022951-exon-sc0000437-1510915933:22386..22462TCONS_00022951-exon-sc0000437-1510915933:22386..22462Clytia hemisphaericaexon
TCONS_00022951-exon-sc0000437-1510915933:22176..22311TCONS_00022951-exon-sc0000437-1510915933:22176..22311Clytia hemisphaericaexon
TCONS_00022951-exon-sc0000437-1510915933:20479..20888TCONS_00022951-exon-sc0000437-1510915933:20479..20888Clytia hemisphaericaexon
TCONS_00022951-exon-sc0000437-1510915933:19151..19672TCONS_00022951-exon-sc0000437-1510915933:19151..19672Clytia hemisphaericaexon
TCONS_00022951-exon-sc0000437-1491911889:23518..23856TCONS_00022951-exon-sc0000437-1491911889:23518..23856Clytia hemisphaericaexon
TCONS_00022951-exon-sc0000437-1491911889:23174..23463TCONS_00022951-exon-sc0000437-1491911889:23174..23463Clytia hemisphaericaexon
TCONS_00022951-exon-sc0000437-1491911889:22386..22462TCONS_00022951-exon-sc0000437-1491911889:22386..22462Clytia hemisphaericaexon
TCONS_00022951-exon-sc0000437-1491911889:22176..22311TCONS_00022951-exon-sc0000437-1491911889:22176..22311Clytia hemisphaericaexon
TCONS_00022951-exon-sc0000437-1491911889:20479..20888TCONS_00022951-exon-sc0000437-1491911889:20479..20888Clytia hemisphaericaexon
TCONS_00022951-exon-sc0000437-1491911889:19151..19672TCONS_00022951-exon-sc0000437-1491911889:19151..19672Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000437supercontigsc0000437:19151..23856 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.54152	1.21585	1.23204	1.53181	0.305711	0.169104	0.262307	0.845847	0.401166	0.473246	0.0459345	0.150978	0.180921	0.140916	0.30894	0.276283	0.255268	0.191871	0.457865	0.453906	0.2411	0.256582	0.415878	0.448986	1.09526	1.91155	0.373012	0.0995222	0.150968	0.128177
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006802Radial_spoke
Blast
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BLAST of TCONS_00022951 vs. Swiss-Prot (Human)
Match: RSH6A (Radial spoke head protein 6 homolog A OS=Homo sapiens GN=RSPH6A PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 3.249e-79
Identity = 166/380 (43.68%), Postives = 230/380 (60.53%), Query Frame = 2 
Query:  431 VPLSDYSRTGYFFEKAGIGFGQEETYRILLGLKSLAMECMFVHVRFWGKILGIKSNYYIAETEFREGEGDAVQPETSEVYSEQVPQHYTQXXXXXXXXXXXXXXXXXXXXWKEPEPVQAEEHHHGANRYVYFVCSKLGEPWVKLPHVTPTEIAQSRKITKLLTGNLEQPIESYPKFVGKEENYLRALIARISAGTQISPSGYYVFX-XXXXXXXXXXXXXXSYVVNIAFDGIPVRQLEKNYRQNWVHHAQYILPQGRCSWWSPSNSFRXXXXXXXXXXXXNMIP----QETGPVLLTNLAGDKNASGNPAWSATLTSEYMPQHGICIMKSNQWPGAYAYSNGKQFDNVYIGWGQKYSADGHNQPFPPASIEEYVKCADVI 1555
             P+ +   T ++FE+AG+G   +E++RI L +K L  +      RFWGKILGIK +Y +AE EFREGE +A + E  E+              E + +E +  + +PK  WK P  +  EE   GAN+Y+YFVC++ G PW +LPHVTP +I  +RKI K  TG L+ P+ SYP F G E NYLRA IARISA TQ+SP G+Y F  +EG+EEE+     DSY  N  F+GIPV +L  +   NWVHH Q+ILPQGRC+W +P     ++ D  EE +  +  P    QE GP LLT L+ D        W+  L+    PQ+ + +++SN WPGAYAY++GK+F+N+YIGWG KYS +  N   P    +EY    +++
Sbjct:  299 TPVPNIMETAFYFEQAGVGLSSDESFRIFLAMKQLVEQQPIHTCRFWGKILGIKRSYLVAEVEFREGEEEAEEEEVEEMTEGGEVME-AHGEEEGEEDEEKAVDIVPKSVWKPPPVIPKEESRSGANKYLYFVCNEPGLPWTRLPHVTPAQIVNARKIKKFFTGYLDTPVVSYPPFPGNEANYLRAQIARISAATQVSPLGFYQFSEEEGDEEEEGGAGRDSYEENPDFEGIPVLELVDSMA-NWVHHTQHILPQGRCTWVNPLQKTEEEEDLGEEEEKADEGPEEVEQEVGPPLLTPLSEDAEIMHLAPWTTRLSCSLCPQYSVAVVRSNLWPGAYAYASGKKFENIYIGWGHKYSPESFNPALPAPIQQEYPSGPEIM 676
The following BLAST results are available for this feature:
BLAST of TCONS_00022951 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSH6A3.249e-7943.68Radial spoke head protein 6 homolog A OS=Homo sapi... [more]
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