TCONS_00022951-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00022951-protein
Unique Name	TCONS_00022951-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	557

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00022951-protein ID=TCONS_00022951-protein|Name=TCONS_00022951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp
GNEFIQFIVWLTTAIRISKKMASMASRKNKAKKTPTQPEMYTGMMKSLKQ
KTKSQGSSSTADPPSTNYNRISNLIQNMLSERTKDLRTATVEYHTIPVTA
EDSRAKLIAEQATYNELHANIEMKLFEVDEDAPEVPEREDDFEVPLSDYS
RTGYFFEKAGIGFGQEETYRILLGLKSLAMECMFVHVRFWGKILGIKSNY
YIAETEFREGEGDAVQPETSEVYSEQVPQHYTQINIESDIEEPEEDEGLP
KPDWKEPEPVQAEEHHHGANRYVYFVCSKLGEPWVKLPHVTPTEIAQSRK
ITKLLTGNLEQPIESYPKFVGKEENYLRALIARISAGTQISPSGYYVFDD
EGNEEEDSEEVHDSYVVNIAFDGIPVRQLEKNYRQNWVHHAQYILPQGRC
SWWSPSNSFRDDFDEDEEFDDENMIPQETGPVLLTNLAGDKNASGNPAWS
ATLTSEYMPQHGICIMKSNQWPGAYAYSNGKQFDNVYIGWGQKYSADGHN
QPFPPASIEEYVKCADVIEEQDPSLEQEEEAKLMEELANNADTIVRANEA
PDDEDDD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012904	XLOC_012904	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00022951	TCONS_00022951	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006802	Radial_spoke

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006802	Radial spokehead-like protein	PFAM	PF04712	Radial_spoke	coord: 68..532 e-value: 5.7E-135 score: 450.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..69

Blast

[Close]

BLAST of TCONS_00022951-protein vs. Swiss-Prot (Human)
Match: RSH4A (Radial spoke head protein 4 homolog A OS=Homo sapiens GN=RSPH4A PE=1 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 1.741e-92
Identity = 210/519 (40.46%), Postives = 298/519 (57.42%), Query Frame = 0

Query:   34 TPTQPEMYTGMMKSLKQKTKSQGSSSTADPPSTNYNRISNLIQNMLSER-----------TKDLRTA--TVEYHTIPVTAEDSRAKLIAEQATYNELHANIEMKLFEVDEDAPEVPEREDDF-EVPLSDYSRTGYFFEKAGIGFGQEETYRILLGLKSLAMECMFVHVRFWGKILGIKSNYYIAETEFREGEGDAVQPETSEVYSEQVPQHYTQINIESDIEEPEEDEGLPKPDWKEPEPVQAEEHHHGANRYVYFVCSKLGEPWVKLPHVTPTEIAQSRKITKLLTGNLEQPIESYPKFVGKEENYLRALIARISAGTQISPSGYYVF-DDEGNEEEDSEEVHDSYVVNIAFDGIPVRQLEKNYRQNWVHHAQYILPQGRCSWW-SPSNSFRDDFDEDEEFDDENMIPQETGPVLLTNLAGDKNASGNPAWSATLTSEYMPQHGICIMKSNQWPGAYAYSNGKQFDNVYIGWGQKYSADGHNQPFPPASIEEYVKCADVIEEQDPSLEQEEEAKLMEE 536
             P   E+   M++   Q  K+    ++++     Y+ +SN++  +L+ER           ++D++ A  + ++  +    E      IAE+     L  ++E     VD+      E ED+  E  L +   + ++FE+AG+G G +ETYRI L LK L         RFWGKILG++ NY +AE EFREGE +    E                N ES+  E EEDE LPK  +K P+ +  EE   GAN+YVYFVC++ G PWVKLP V P +I  +RKI K  TG L+ PI SYP F G E NYLRA IARISAGT +SP G+Y F ++EG EEE++E   +S+  N  F+GI V  L ++   NWVHH Q+IL QGRC+W+ S   +  ++ +EDEE DD + I QE G  LLT ++ D      P W+  L+S  +PQ+ I +++SN WPGAYA+SNGK+F+N YIGWG KYS D +  P PP   +EY    ++ E  DPS+E+E+  +  +E
Sbjct:  196 APGGSEVAPSMLEITIQNAKAYLLKTSSNSGFNLYDHLSNMLTKILNERPENAVDIFENISQDVKMAHFSKKFDALQNENELLPTYEIAEKQKALFLQGHLEG----VDQ------ELEDEIAENALPNVMESAFYFEQAGVGLGTDETYRIFLALKQLTDTHPIQRCRFWGKILGLEMNYIVAEVEFREGEDEEEVEEEDVAEERD--------NGESEAHEDEEDE-LPKSFYKAPQAIPKEESRTGANKYVYFVCNEPGRPWVKLPPVIPAQIVIARKIKKFFTGRLDAPIISYPPFPGNESNYLRAQIARISAGTHVSPLGFYQFGEEEGEEEEEAEGGRNSFEENPDFEGIQVIDLVESL-SNWVHHVQHILSQGRCNWFNSIQKNEEEEEEEDEEKDDSDYIEQEVGLPLLTPISEDLEIQNIPPWTTRLSSNLIPQYAIAVLQSNLWPGAYAFSNGKKFENFYIGWGHKYSPDNYTPPVPPPVYQEYPSGPEITEMDDPSVEEEQAFRAAQE 694

The following BLAST results are available for this feature:

BLAST of TCONS_00022951-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00022951-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RSH4A	1.741e-92	40.46	Radial spoke head protein 4 homolog A OS=Homo sapi...	[more]

You are here

TCONS_00022951-protein (polypeptide) - C. hemisphaerica