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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022917 ID=TCONS_00022917|Name=TCONS_00022917|organism=Clytia hemisphaerica|type=transcript|length=3202bpRun BLAST on NCBI protein sequence of TCONS_00022917-protein >TCONS_00022917-protein ID=TCONS_00022917-protein|Name=TCONS_00022917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=944bp MPKKDRLKISKLPKPLLPEKEVRDKHFKPTVDKQVTFKEYSQHFEHWTPWRun BLAST on NCBI transcript from alignment at sc0000436:111879..147469- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022917 ID=TCONS_00022917|Name=TCONS_00022917|organism=Clytia hemisphaerica|type=transcript|length=35591bp|location=Sequence derived from alignment at sc0000436:111879..147469- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000436:111879..147469- >TCONS_00022917 ID=TCONS_00022917|Name=TCONS_00022917|organism=Clytia hemisphaerica|type=CDS|length=42525bp|location=Sequence derived from alignment at sc0000436:111879..147469- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022917 vs. Swiss-Prot (Human)
Match: FBXW7 (F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 2.194e-37 Identity = 84/283 (29.68%), Postives = 153/283 (54.06%), Query Frame = 2
Query: 1943 LKRVRKLQGHLEAVLA-VQFDRKRVMSGSMDRTIRLWDARSGRNFYKLKGHQGGVRCIQFDDEYIVTGSWDTTCIVWHISRFTLLHTINEHTGAVACLEMNKEFLITGSHDNSICIFERGTWKLLKRLIGHKGPVSCMAFVSEEELITGSHDMRVILWNMDTGENLREFYLPKSPILTVKICGNLIAAGCLDGTLNFWNKTTGCPEGRIKAHNGAVHAVCFIAKRFVTGGGDNLVKEWDLSTCTCIRSLTG---HKGPVLCLRASHKRIISGSSDGTIRIWDM 2779
LK + L+GH + V+ +QF R++SGS D T+++W A +G+ L GH GGV Q D I++GS D T VW+ +HT+ HT V C+ ++++ +++GS D ++ +++ T + L L+GH V C+ + +++G++D V +W+ +T L + + +++ G + +G LD ++ W+ TG + H + V+G D+ VK WD+ T C+++L G H+ V CL+ + +I+ S DGT+++WD+
Sbjct: 370 LKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 651 HSP 2 Score: 118.627 bits (296), Expect = 3.354e-27 Identity = 65/202 (32.18%), Postives = 106/202 (52.48%), Query Frame = 2
Query: 1952 VRKLQGHLEAVLAVQFDRKRVMSGSMDRTIRLWDARSGRNFYKLKGHQGGVRCIQFDDEYIVTGSWDTTCIVWHISRFTLLHTINEHTGAVACLEMNKEFLITGSHDNSICIFERGTWKLLKRLIGHKGPVSCMAFVSEEELITGSHDMRVILWNMDTGENLREFYLP---KSPILTVKICGNLIAAGCLDGTLNFWNKTTG 2548
+ L GH V + KRV+SGS D T+R+WD +G+ + L GH VRC+Q+D +V+G++D VW T LHT+ HT V L+ + +++GS D SI +++ T + L GH+ S M + L++G+ D V +W++ TG+ L+ P +S + ++ N + DGT+ W+ TG
Sbjct: 454 IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL-KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG 654 HSP 3 Score: 107.842 bits (268), Expect = 8.972e-24 Identity = 56/165 (33.94%), Postives = 97/165 (58.79%), Query Frame = 2
Query: 1961 LQGHLEAVLAVQFDRKRVMSGSMDRTIRLWDARSGRNFYKLKGHQGGVRCIQFDDEYIVTGSWDTTCIVWHISRFTLLHTINEHTGAVACLEMNKEFLITGSHDNSICIFERGTWKLLKRLIG---HKGPVSCMAFVSEEELITGSHDMRVILWNMDTGENLREF 2446
L GH+ AV VQ+D +RV+SG+ D +++WD + + L+GH V +QFD ++V+GS DT+ VW + +HT+ H + +E+ L++G+ D+++ I++ T + L+ L G H+ V+C+ F ++ +IT S D V LW++ TGE +R
Sbjct: 497 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLKTGEFIRNL 660 HSP 4 Score: 93.5893 bits (231), Expect = 2.162e-19 Identity = 46/125 (36.80%), Postives = 74/125 (59.20%), Query Frame = 2
Query: 1961 LQGHLEAVLAVQFDRKRVMSGSMDRTIRLWDARSGRNFYKLKGHQGGVRCIQFDDEYIVTGSWDTTCIVWHISRFTLLHTI---NEHTGAVACLEMNKEFLITGSHDNSICIFERGTWKLLKRLI 2326
LQGH V ++QFD V+SGS+D +IR+WD +G + L GHQ ++ D +V+G+ D+T +W I L T+ N+H AV CL+ NK F+IT S D ++ +++ T + ++ L+
Sbjct: 537 LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 661 HSP 5 Score: 86.6557 bits (213), Expect = 3.873e-17 Identity = 50/164 (30.49%), Postives = 82/164 (50.00%), Query Frame = 2
Query: 2288 FERGTWKLLKRLIGHKGPV-SCMAFVSEEELITGSHDMRVILWNMDTGENLREFYLPKSPILTVKICGNLIAAGCLDGTLNFWNKTTGCPEGRIKAHNGAVHAVCFIAKRFVTGGGDNLVKEWDLSTCTCIRSLTGHKGPVLCLRASHKRIISGSSDGTIRIWD 2776
+ RG K K L GH V +C+ F +++GS D + +W+ TG+ LR + + ++ N+I +G D TL WN TG + H V + KR V+G D ++ WD+ T C+ L GH V C++ +R++SG+ D +++WD
Sbjct: 365 WRRGELKSPKVLKGHDDHVITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD 527 The following BLAST results are available for this feature:
BLAST of TCONS_00022917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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