TCONS_00022917-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022917-protein
Unique NameTCONS_00022917-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length944

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022917-protein ID=TCONS_00022917-protein|Name=TCONS_00022917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=944bp
MPKKDRLKISKLPKPLLPEKEVRDKHFKPTVDKQVTFKEYSQHFEHWTPW
QRKILFCQFTSQSTVSLLVSLSTIMEPVFHRDYQVSNTGTFTSSLIHNFS
TFEPLSEQSQPEKDEGGKKQNLETLSTASFLRKDNSVLFQGKRQSQRLSN
VSKIDFNKSFNRLDSLKSNTLVIEKSLHILDGRSSPKTRRTSSRVKSPFS
EIHIEELPLKDDQMIDHKHEEYKHKDSVSTIDFFAQRHGNKVATLGSFVR
TTKNYPMKPTAASMNYKHKQWYLPPIKRKQTLLKASKSALLKDFKDLSKE
VVMSYRKWTNAEQGDFILSLLEFCQPEEITYLGNCIQQRLREIGDINRLP
DKVLLNVFSYLDKKDLHSCSQTCKRWKYLAFHDTVWKEMCYQLAEQYNQH
GVLQYLENISVDFKWKNIYKDLENTVQQLVDATVLQPVNGAIVPSQNHGG
CIDAIVEEDEDEYIESPEPVRLGKGKSSRLAKVILGVDSKTRMSDLAEED
DEEAEDEEDNYDENMFTEYKHIHRHELSPTRSFGTFGSENSKEEVQKVFT
AAASGTEKRAVHKQSSTMNHVSSDTNFANELAFDVRSKLVQPINIRHESS
YNNTKRTPDENFMSISIQGVRSLKRVRKLQGHLEAVLAVQFDRKRVMSGS
MDRTIRLWDARSGRNFYKLKGHQGGVRCIQFDDEYIVTGSWDTTCIVWHI
SRFTLLHTINEHTGAVACLEMNKEFLITGSHDNSICIFERGTWKLLKRLI
GHKGPVSCMAFVSEEELITGSHDMRVILWNMDTGENLREFYLPKSPILTV
KICGNLIAAGCLDGTLNFWNKTTGCPEGRIKAHNGAVHAVCFIAKRFVTG
GGDNLVKEWDLSTCTCIRSLTGHKGPVLCLRASHKRIISGSSDGTIRIWD
MICVMQQIGGPYDDIRKIIIPSETINERQWKERKDVFQDFEDEV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012881XLOC_012881Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022917TCONS_00022917Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001810F-box_dom
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 494..514
NoneNo IPR availableGENE3D2.40.50.140coord: 610..654
e-value: 6.9E-9
score: 34.7
NoneNo IPR availableGENE3D2.80.10.50coord: 807..856
e-value: 7.0E-14
score: 51.1
coord: 857..936
e-value: 4.1E-16
score: 58.4
NoneNo IPR availableGENE3D1.10.10.670coord: 655..708
e-value: 6.1E-18
score: 64.0
NoneNo IPR availableGENE3D1.20.1280.50coord: 345..609
e-value: 3.0E-17
score: 62.4
NoneNo IPR availableCDDcd00200WD40coord: 626..900
e-value: 7.72215E-63
score: 213.736
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 847..861
score: 36.06
coord: 646..660
score: 39.64
coord: 887..901
score: 40.47
IPR001810F-box domainSMARTSM00256fbox_2coord: 349..389
e-value: 2.1E-9
score: 47.2
IPR001810F-box domainPFAMPF12937F-box-likecoord: 346..390
e-value: 3.2E-14
score: 52.5
IPR001810F-box domainPROSITEPS50181FBOXcoord: 343..389
score: 15.088
IPR001810F-box domainSUPERFAMILY81383F-box domaincoord: 343..424
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 823..860
e-value: 2.3E-4
score: 30.5
coord: 863..900
e-value: 4.3E-10
score: 49.5
coord: 662..699
e-value: 5.2E-6
score: 36.0
coord: 702..739
e-value: 0.0012
score: 28.1
coord: 742..780
e-value: 8.3E-7
score: 38.6
coord: 622..659
e-value: 4.6E-6
score: 36.2
coord: 783..820
e-value: 0.027
score: 23.6
IPR001680WD40 repeatPFAMPF00400WD40coord: 664..698
e-value: 1.0E-4
score: 22.9
coord: 865..900
e-value: 7.7E-7
score: 29.6
coord: 743..780
e-value: 0.0046
score: 17.7
coord: 625..659
e-value: 2.7E-4
score: 21.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 629..668
score: 13.783
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 870..901
score: 12.948
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 669..708
score: 11.043
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 830..869
score: 10.508
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 749..789
score: 12.413
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 709..806
e-value: 5.3E-25
score: 87.6
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 767..781
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 646..660
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 887..901
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 629..901
score: 52.651
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 615..901

Blast
BLAST of TCONS_00022917-protein vs. Swiss-Prot (Human)
Match: FBXW7 (F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.361e-38
Identity = 84/283 (29.68%), Postives = 153/283 (54.06%), Query Frame = 0
Query:  623 LKRVRKLQGHLEAVL-AVQFDRKRVMSGSMDRTIRLWDARSGRNFYKLKGHQGGVRCIQFDDEYIVTGSWDTTCIVWHISRFTLLHTINEHTGAVACLEMNKEFLITGSHDNSICIFERGTWKLLKRLIGHKGPVSCMAFVSEEELITGSHDMRVILWNMDTGENLREFYLPKSPILTVKICGNLIAAGCLDGTLNFWNKTTGCPEGRIKAHNGAVHAVCFIAKRFVTGGGDNLVKEWDLSTCTCIRSLTG---HKGPVLCLRASHKRIISGSSDGTIRIWDM 901
            LK  + L+GH + V+  +QF   R++SGS D T+++W A +G+    L GH GGV   Q  D  I++GS D T  VW+      +HT+  HT  V C+ ++++ +++GS D ++ +++  T + L  L+GH   V C+ +     +++G++D  V +W+ +T   L       + + +++  G  + +G LD ++  W+  TG     +  H      +       V+G  D+ VK WD+ T  C+++L G   H+  V CL+ +   +I+ S DGT+++WD+
Sbjct:  370 LKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 651          

HSP 2 Score: 120.553 bits (301), Expect = 7.232e-28
Identity = 65/202 (32.18%), Postives = 106/202 (52.48%), Query Frame = 0
Query:  626 VRKLQGHLEAVLAVQFDRKRVMSGSMDRTIRLWDARSGRNFYKLKGHQGGVRCIQFDDEYIVTGSWDTTCIVWHISRFTLLHTINEHTGAVACLEMNKEFLITGSHDNSICIFERGTWKLLKRLIGHKGPVSCMAFVSEEELITGSHDMRVILWNMDTGENLREFYLP---KSPILTVKICGNLIAAGCLDGTLNFWNKTTG 824
            +  L GH   V  +    KRV+SGS D T+R+WD  +G+  + L GH   VRC+Q+D   +V+G++D    VW     T LHT+  HT  V  L+ +   +++GS D SI +++  T   +  L GH+   S M    +  L++G+ D  V +W++ TG+ L+    P   +S +  ++   N +     DGT+  W+  TG
Sbjct:  454 IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL-KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG 654          

HSP 3 Score: 108.997 bits (271), Expect = 2.668e-24
Identity = 57/170 (33.53%), Postives = 99/170 (58.24%), Query Frame = 0
Query:  629 LQGHLEAVLAVQFDRKRVMSGSMDRTIRLWDARSGRNFYKLKGHQGGVRCIQFDDEYIVTGSWDTTCIVWHISRFTLLHTINEHTGAVACLEMNKEFLITGSHDNSICIFERGTWKLLKRLIG---HKGPVSCMAFVSEEELITGSHDMRVILWNMDTGENLREFYLPKS 795
            L GH+ AV  VQ+D +RV+SG+ D  +++WD  +    + L+GH   V  +QFD  ++V+GS DT+  VW +     +HT+  H    + +E+    L++G+ D+++ I++  T + L+ L G   H+  V+C+ F ++  +IT S D  V LW++ TGE +R     +S
Sbjct:  497 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 665          

HSP 4 Score: 94.3597 bits (233), Expect = 9.752e-20
Identity = 53/167 (31.74%), Postives = 90/167 (53.89%), Query Frame = 0
Query:  629 LQGHLEAVLAVQFDRKRVMSGSMDRTIRLWDARSGRNFYKLKGHQGGVRCIQFDDEYIVTGSWDTTCIVWHISRFTLLHTI---NEHTGAVACLEMNKEFLITGSHDNSICIFERGTWKLLKRLI----GHKGPVSCMAFVSEEELI------TGSHDMRVILWNMD 782
            LQGH   V ++QFD   V+SGS+D +IR+WD  +G   + L GHQ     ++  D  +V+G+ D+T  +W I     L T+   N+H  AV CL+ NK F+IT S D ++ +++  T + ++ L+    G  G V      S  +L+       G+ + ++++ + D
Sbjct:  537 LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 703          

HSP 5 Score: 87.8113 bits (216), Expect = 1.001e-17
Identity = 50/164 (30.49%), Postives = 82/164 (50.00%), Query Frame = 0
Query:  738 FERGTWKLLKRLIGHKGPV-SCMAFVSEEELITGSHDMRVILWNMDTGENLREFYLPKSPILTVKICGNLIAAGCLDGTLNFWNKTTGCPEGRIKAHNGAVHAVCFIAKRFVTGGGDNLVKEWDLSTCTCIRSLTGHKGPVLCLRASHKRIISGSSDGTIRIWD 900
            + RG  K  K L GH   V +C+ F     +++GS D  + +W+  TG+ LR        + + ++  N+I +G  D TL  WN  TG     +  H   V  +    KR V+G  D  ++ WD+ T  C+  L GH   V C++   +R++SG+ D  +++WD
Sbjct:  365 WRRGELKSPKVLKGHDDHVITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD 527          
The following BLAST results are available for this feature:
BLAST of TCONS_00022917-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBXW73.361e-3829.68F-box/WD repeat-containing protein 7 OS=Homo sapie... [more]
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