|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022897 ID=TCONS_00022897|Name=TCONS_00022897|organism=Clytia hemisphaerica|type=transcript|length=2442bpRun BLAST on NCBI protein sequence of TCONS_00022897-protein >TCONS_00022897-protein ID=TCONS_00022897-protein|Name=TCONS_00022897-protein|organism=Clytia hemisphaerica|type=polypeptide|length=748bp MIPLFWKRQYTANTYEKQFYFPSKIINGFTSSTHDEYPIEGEMGVALPPFRun BLAST on NCBI transcript from alignment at sc0000436:158701..172298+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022897 ID=TCONS_00022897|Name=TCONS_00022897|organism=Clytia hemisphaerica|type=transcript|length=13598bp|location=Sequence derived from alignment at sc0000436:158701..172298+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000436:158701..172298+ >TCONS_00022897 ID=TCONS_00022897|Name=TCONS_00022897|organism=Clytia hemisphaerica|type=CDS|length=31458bp|location=Sequence derived from alignment at sc0000436:158701..172298+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022897 vs. Swiss-Prot (Human)
Match: DTL (Denticleless protein homolog OS=Homo sapiens GN=DTL PE=1 SV=3) HSP 1 Score: 332.798 bits (852), Expect = 2.983e-101 Identity = 166/378 (43.92%), Postives = 236/378 (62.43%), Query Frame = 3
Query: 147 NTYEKQFYFPSKIINGFTSSTHDEYPIEGEMGVALPPFVARFSESILSGNMLGVADEDGHVKLLDTR-KTKNNSLIKEWSAHSNAVFDMAWVQNESKMITASGDQTARLWDVEKAETTAIFRGHTCSLKSVAVAPHCKDMFVTGARDGKIMIWDARCNRKNGYNIPVKTISGGHVLPVKESNALTXXXXXXXXXXNSMFQADAKASVTSAIFLGSKTVISAGACDGVIKQWDLRKSYANIKGEPVPIHTVPFPGSGPRVHGYSSLVANSSMSRIYAVCANDVVYEYSTTNNATIPMATYKNHVVKSFYVKAALSPDDRFLLCGSTNGNAYIWQVNKPKEAPWLLKGHESEVTSVTWSPHQGDKIVTCSDDNTFRIWRM 1277
N + Q+ S ++ G+ S +DE+ GE GV +PPF FS + ++L VA+E+G V+L +T ++ KEW AH NAVFD+AWV E K++TA+GDQTA+ WDV+ E +GH CSLKSVA + K +F TG RDG IM+WD RCN+K+G+ V ISG H K++ + + + S+ D + SVT +F T++SAGA DG+IK WDLRK+Y + EP+ + +PGS R GYSSL+ +S+ S ++A C +D +Y ++ T T P+A + H +FYVK++LSPDD+FL+ GS++ AYIW+V+ P + P +L GH EVTSV W P KI TCSDDNT +IWR+
Sbjct: 17 NGWSSQYPLQS-LLTGYQCSGNDEHTSYGETGVPVPPFGCTFSSAPNMEHVLAVANEEGFVRLYNTESQSFRKKCFKEWMAHWNAVFDLAWVPGELKLVTAAGDQTAKFWDVKAGELIGTCKGHQCSLKSVAFSKFEKAVFCTGGRDGNIMVWDTRCNKKDGFYRQVNQISGAHNTSDKQTPSKPKKKQNSKGLAPSV---DFQQSVTVVLFQDENTLVSAGAVDGIIKVWDLRKNYTAYRQEPIASKSFLYPGSSTRKLGYSSLILDSTGSTLFANCTDDNIYMFNMTGLKTSPVAIFNGHQNSTFYVKSSLSPDDQFLVSGSSDEAAYIWKVSTPWQPPTVLLGHSQEVTSVCWCPSDFTKIATCSDDNTLKIWRL 390 The following BLAST results are available for this feature:
BLAST of TCONS_00022897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.