TCONS_00022897-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022897-protein
Unique NameTCONS_00022897-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length748

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022897-protein ID=TCONS_00022897-protein|Name=TCONS_00022897-protein|organism=Clytia hemisphaerica|type=polypeptide|length=748bp
MIPLFWKRQYTANTYEKQFYFPSKIINGFTSSTHDEYPIEGEMGVALPPF
VARFSESILSGNMLGVADEDGHVKLLDTRKTKNNSLIKEWSAHSNAVFDM
AWVQNESKMITASGDQTARLWDVEKAETTAIFRGHTCSLKSVAVAPHCKD
MFVTGARDGKIMIWDARCNRKNGYNIPVKTISGGHVLPVKESNALTGSGK
KRRSRRNSMFQADAKASVTSAIFLGSKTVISAGACDGVIKQWDLRKSYAN
IKGEPVPIHTVPFPGSGPRVHGYSSLVANSSMSRIYAVCANDVVYEYSTT
NNATIPMATYKNHVVKSFYVKAALSPDDRFLLCGSTNGNAYIWQVNKPKE
APWLLKGHESEVTSVTWSPHQGDKIVTCSDDNTFRIWRMFQKDYMEKTDI
SGVCERWKDEVLNEENAEEPTYEVISNKPRLPYLCPAIRVTTNRKVLAKW
DLQSINVKPPPSTRATPVCKTPDASSGSAVSKRTPSASISTSTTPMSIDS
ATSSTNRPQTLNLKSQNRTSPAQRSLQPTTPKSSRSFMETWLKSPLNSKE
SPVTIGANSGNKLKPISEETETEKLDIVKKGECSSDMNKEPCSVERTEVD
KVSKDSSDIVTREPAKQDTPPNKGIERKTGSERVVKRRLINKYAKNRTTP
QRATRSNTPKSENIRTLMLSGKKRKRKSEDGENTSMKCSKSLKLDGCKEN
INEETKNLNNNNNDDVMENLNDVIEIIDPKEVLSENNQTKDLLDIAED
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012874XLOC_012874Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022897TCONS_00022897Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 694..714
NoneNo IPR availableGENE3D2.80.10.50coord: 23..123
e-value: 1.8E-14
score: 53.1
NoneNo IPR availableGENE3D2.40.50.140coord: 124..173
e-value: 7.7E-12
score: 44.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 456..569
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 583..687
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 109..123
score: 34.88
coord: 230..244
score: 31.7
coord: 152..166
score: 30.51
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 203..243
e-value: 6.3
score: 11.9
coord: 83..122
e-value: 1.5E-7
score: 41.1
coord: 303..344
e-value: 3.6
score: 13.5
coord: 125..165
e-value: 6.5E-6
score: 35.6
coord: 348..388
e-value: 1.2E-7
score: 41.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 129..165
e-value: 0.0028
score: 18.4
coord: 355..387
e-value: 1.1E-4
score: 22.9
coord: 307..343
e-value: 0.23
score: 12.3
coord: 86..122
e-value: 0.016
score: 16.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 355..397
score: 14.318
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 90..131
score: 13.616
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 132..165
score: 12.179
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 336..571
e-value: 1.8E-15
score: 56.1
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 196..335
e-value: 4.7E-11
score: 41.7
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 109..123
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 90..397
score: 23.677
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 201..392
coord: 55..169

Blast
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BLAST of TCONS_00022897-protein vs. Swiss-Prot (Human)
Match: DTL (Denticleless protein homolog OS=Homo sapiens GN=DTL PE=1 SV=3)

HSP 1 Score: 338.191 bits (866), Expect = 3.040e-105
Identity = 167/378 (44.18%), Postives = 238/378 (62.96%), Query Frame = 0 
Query:   13 NTYEKQFYFPSKIINGFTSSTHDEYPIEGEMGVALPPFVARFSESILSGNMLGVADEDGHVKLLDTR-KTKNNSLIKEWSAHSNAVFDMAWVQNESKMITASGDQTARLWDVEKAETTAIFRGHTCSLKSVAVAPHCKDMFVTGARDGKIMIWDARCNRKNGYNIPVKTISGGHVLPVKESNALTGSGKKRRSRRNSMFQADAKASVTSAIFLGSKTVISAGACDGVIKQWDLRKSYANIKGEPVPIHTVPFPGSGPRVHGYSSLVANSSMSRIYAVCANDVVYEYSTTNNATIPMATYKNHVVKSFYVKAALSPDDRFLLCGSTNGNAYIWQVNKPKEAPWLLKGHESEVTSVTWSPHQGDKIVTCSDDNTFRIWRM 389
            N +  Q+   S ++ G+  S +DE+   GE GV +PPF   FS +    ++L VA+E+G V+L +T  ++      KEW AH NAVFD+AWV  E K++TA+GDQTA+ WDV+  E     +GH CSLKSVA +   K +F TG RDG IM+WD RCN+K+G+   V  ISG H    K++ +     KK+++ +      D + SVT  +F    T++SAGA DG+IK WDLRK+Y   + EP+   +  +PGS  R  GYSSL+ +S+ S ++A C +D +Y ++ T   T P+A +  H   +FYVK++LSPDD+FL+ GS++  AYIW+V+ P + P +L GH  EVTSV W P    KI TCSDDNT +IWR+
Sbjct:   17 NGWSSQYPLQS-LLTGYQCSGNDEHTSYGETGVPVPPFGCTFSSAPNMEHVLAVANEEGFVRLYNTESQSFRKKCFKEWMAHWNAVFDLAWVPGELKLVTAAGDQTAKFWDVKAGELIGTCKGHQCSLKSVAFSKFEKAVFCTGGRDGNIMVWDTRCNKKDGFYRQVNQISGAHNTSDKQTPS---KPKKKQNSKGLAPSVDFQQSVTVVLFQDENTLVSAGAVDGIIKVWDLRKNYTAYRQEPIASKSFLYPGSSTRKLGYSSLILDSTGSTLFANCTDDNIYMFNMTGLKTSPVAIFNGHQNSTFYVKSSLSPDDQFLVSGSSDEAAYIWKVSTPWQPPTVLLGHSQEVTSVCWCPSDFTKIATCSDDNTLKIWRL 390
The following BLAST results are available for this feature:
BLAST of TCONS_00022897-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DTL3.040e-10544.18Denticleless protein homolog OS=Homo sapiens GN=DT... [more]
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