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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022893 ID=TCONS_00022893|Name=TCONS_00022893|organism=Clytia hemisphaerica|type=transcript|length=2243bp
TTTTTCCGTTGCTGCTACTATTTAAAGTAATATGCGACTTGTTTTTGACT
CTATGGTGGAGAAAAATCACCATATAGATACATCCGAGCACTCCTTCCGA
AAGCAATTTCTAAGAACAATCGATTCGTGACGTCAAACATTCTATTGTTT
CCACCACACCTTTAAGGAAAGGAGCGAACCATATAACTCTATTGCCATac
catatttaaaaaattcgtTTGTCAGTCTTTATATGGAAAAAGAGCAAGAC
AGAGAAGATGCAAAGTGCGAACGTGTTAGGATACACAACAACAGCAGGTT
CTGCTGGAGGAATTCAGCAAGAAGGTCCAGGTAGAGCTCCAAATGCAGGG
GAAATCAATGTACCTGCTCCAAGGTCCTTTGTCCAGCCCCTCATCGTCGA
TGAGACAAAGCAATATATGGAGGGGCTCGTCCCAGACGATGACGATGATG
GACAGGATGACGATGGGTGTGATAAAAAGGGGTCCAAGAAAACAAGAGGA
AGGGTGAAAATCAAGATGGAATTCATTCAAAACAAGCTTAGAAGATACAC
CACCTTCAGCAAAAGGAAGACAGGCATCATGAAAAAAgCTTATGAATTGA
GTACTTTAACTGGAACACAAGTTATGCTTTTGGTCGCTTCAGAGACTGGC
CATGTCTACACATTCGCAACAAGGAAATTACAACCCATGATTACATCAGA
AAGTGGAAAAGCACTAATCCAAACATGTCTGAATTCTCCAGATCCTTCCC
CCGCTCAACAGTTGACACATTCAGATAATGGAATACTCCCTGACTCAGCA
GCAGTTACTGTCTTAGGAAGTTCTCGCACAGTTGTAGGGAATGAAGATCC
TGAGATTGCGTACACTACACGAGATGAAGACATGAAGGCATCACAAGCAA
GTTCTCCGCCGATCGGCACCATCAATTACGTCAATCAATCTGGACAATCT
TACCCTATGACCGCTTACATTGCTCCGACCGTCTCCAACCAAACAACCAT
TCTGGCTCCAAGTGTGAACAACAACCAAAGTGGCACCACTGTTCAACTGC
AAGCTCCTACTGTTGCCGCCGCTACCCAAAATAACCAACCTCAGATCATC
TCAGGACAATTACAATTACATCGGATCCACCCACAAAACATTCTGCTCAC
CGGAAGTTCGCCCGTCTTGCAATCCAACCACGTCATTCTGAATAATTCGT
CCACCACTCAACCAGTCGTTCTTGATGCTTCGCAAAATAACTCCGCAACT
CGCCACACAACCTCCAATCAAGATGTCATTGCTCTCGTTAACCCAGACGC
TTCGTCTCGTTTACAGATGGTTTACAGCCCGAGTGGAAGTGCGGTCATAT
ACACACCGCAAGGGACAAACTTAAAAAGGGCAAACACTACTAATATATCG
AATGCAGATGTAGTTGCGTTACAGCATACACCAGTTATACAGACTTCAGC
CATGAACCAAGATGGCGGTAATGGTTGAGCTTTCTCTTTTCATGGTGTCT
TTAGTATGTCTTCGGTTATTTCTTCAGAGAATTCCCAAAAAGCAGATCGG
ACTTGAGCGTTGAATTACTGTAGAGTCATCATATAACTCTAACATATTCG
AAGTTTTCTCACAACAAGCGCCTAAGACATAAGCCCCAAACAAATTATTC
GCTTTCTCTCAGGTGTTTGAGGCTCAACTGTTATATGTTGCAGATCTAGA
ATATTGGGTCTTCCGTGAAGAAAAAAAGCAAGGCTATACTGTAGGTGTCA
TGAATAGCTGAAATCAGTGTGTGAatattgtaaaatgtaaaaaaaacttt
tttgattggtTTTTGAAGTGAAATTTTTGTGCATGAGATGGCTGATTGTT
GTTATTAAAATGTCGAAATAATGTAAATTCGGTAATAGAGTCTGGTTTAC
TCAATTATCGACATCATTGATTTGGGTTTTGGTATGATGGTTTTGTTTTA
GTTCAAGTTTGTATATAAATAGCTCTCTAccgagtttgtttttttttgta
taatttcAGCTACATTTTCTTCATGTAGATTTAGGATGGTTAAAAGTGTT
CTAATTTTTAGCTTTCTTTATAACTTTTAGTTGattctttcaaacaaaat
tttggataattaATGCCAATGAATTTtctaatgatttttctttttcaatt
tatctTTGTACATagttatttttttaagttttattcaACATGATTTATAT
TTTGGTTCAAAAACCCTAAAGACAGAAAAGTACGTAAACAGAG Run BLAST on NCBI protein sequence of TCONS_00022893-protein >TCONS_00022893-protein ID=TCONS_00022893-protein|Name=TCONS_00022893-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
MQSANVLGYTTTAGSAGGIQQEGPGRAPNAGEINVPAPRSFVQPLIVDET
KQYMEGLVPDDDDDGQDDDGCDKKGSKKTRGRVKIKMEFIQNKLRRYTTF
SKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSESG
KALIQTCLNSPDPSPAQQLTHSDNGILPDSAAVTVLGSSRTVVGNEDPEI
AYTTRDEDMKASQASSPPIGTINYVNQSGQSYPMTAYIAPTVSNQTTILA
PSVNNNQSGTTVQLQAPTVAAATQNNQPQIISGQLQLHRIHPQNILLTGS
SPVLQSNHVILNNSSTTQPVVLDASQNNSATRHTTSNQDVIALVNPDASS
RLQMVYSPSGSAVIYTPQGTNLKRANTTNISNADVVALQHTPVIQTSAMN
QDGGNG Run BLAST on NCBI transcript from alignment at sc0000436:26545..36098+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022893 ID=TCONS_00022893|Name=TCONS_00022893|organism=Clytia hemisphaerica|type=transcript|length=9554bp|location=Sequence derived from alignment at sc0000436:26545..36098+ (Clytia hemisphaerica)
TTTTTCCGTTGCTGCTACTATTTAAAGTAATATGCGACTTGTTTTTGACT
CTATGGTGGAGAAAAATCACCATATAGATACATCCGAGCACTCCTTCCGA
AAGCAATTTCTAAGAACAATCGATTCGTGACGTCAAACATTCTATTGTTT
CCACCACACCTTTAAGGAAAGGAGCGAACCATATAACTCTATTGCCATac
catatttaaaaaattcgtTTGTCAGTCTTTATATGGAAAAAGAGCAAGAC
AGAGAAGATGCAAAGTGCGAACGTGTTAGGATACACAACAACAGCAGGTT
CTGCTGGAGGAATTCAGCAAGAAGGTCCAGGTAGAGCTCCAAATGCAGGG
GAAATCAATGTACCTGCTCCAAGGTCCTTTGTCCAGCCCCTCATCGTCGA
TGAGACAAAGCAATATATGGAGGGGCTCGTCCCAGACGATGACGATGATG
GACAGGATGACGATGGGTGTGATAAAAAGGGGTCCAAGAAAACAAGAGGA
AGGGTGAAAATCAAGATGGAATTCATTCAAAACAAGCTTAGAAGATACAC
CACCTTCAGCAAAAGGAAGACAGGCATCATGAAAAAAGTAAGCTTTTTTA
ATTACATAGCGCTATCTTACATTATAAGATCTATTAGCACTTTTTTACTT
CAAGCAGTTCTCGACCCTGCCAACACACCAGACATTTTGAACACTGGGGG
GCACGCTAAGTCTGGTGTGGTGTGGGATGAGGATATTTTTTAACACAGAC
AGGACAATCTCTACGTCCGGTGTGTGTGCATAATATTGAAACACGAATAA
TACTACTTTTGGGCACCGGACAAAACACCTGACTGTCCGGTGCATTGGCA
GGGTCGTAACAGTTtcagtcagttacatcaatatgccttcttacctgtct
ttaaaaatataaataaaagtaatcacggaaaaggacgcgaaaaaaaaaag
acataagtgtgagaacagagtaatcaaactcattagaaaaagtaccatta
gaagtcataaaaaatcaacctgaataaatgcaatcgaaattccagagaac
ttcataattcccaaaacaacattacattactatgtcaaactcccatcaca
taaaattttacaattacgtcagagtagactatgctcgccaccgaagaggt
ttatttgaaaagggtaattatattttattgttcgcttcttttttaaagat
tcgccgggctggaaaagtatgaatttctttgtacatattttacctatcCC
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNaactcgatgttacaatccaattattgaaagtttgtctcggcctttt
tataatgagcgagacatacgttctctgattacgcaattttcatattgata
tttttgaggcattttgatgtaactgtcagttCATTTTGGCTACCTCATTG
GTTATTATATTTCGCgcaattcacaaaattttttggaGGAAACATTTTTC
GCCTGTACTAAATTTCGTGATTGCCAGTTTCTGgaaatttttgcgtggat
tagattaggaccctgccgacgcaccggactgtccgatgtatttgtccggt
ggcaaaaagtatcctttcgctacaccggacgcaataagtccggtgtcagt
ccgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtggacgccggacattta
tgaaacaaaaaattaagaaacaccggacgcaccggactggtcatgtccgg
tgttttgattgtccggtggaaataAATATCCTTCTCCAACACCGGACATA
CGaattccttaagtccggtgtagagattgtccggtggtaaaaagaattct
cattttacaccggactttcgcgtgtccggtgttcgttaagtccggtgcgt
cggcagggtcctattagatttcgcgattcactgagttgggcattttcaaa
aagtgggaataaagaaagaaaatgactgatttcCCAGTGTGGAAGCTATG
TAAAGTACACGCCAAATTGTTATTTGATTAAAGTGAGGTGCACACCAAAA
GAAGTTTGGCTTGCGGtaggacatgttcataaaacaTAGGGCgaaagttt
gtttatttgtttaagTTCTCTTTCGCTTTTTGTAGTACTATTTACAGTGA
ATAAAAACCTGAGAgtgaaaagagctcataaaTGGGAGCTTTCTACGCCA
CTCATCAgtataaaatcctttaaaaatattacaggaaacttttaaaatat
tacggaacgttttcgtaataataATAAACTAAAGGAATGACTGCCTCTGG
GGCAGAATAACGTTTACACGCACAAATGAAAAGTCTAAAGCagcaataat
aaaataaaataaaatttaagataaaGTAGCTCAAGTTATATAACAAACCA
AATAAAGCATATACACAATCGATAATCAATGTTTTACTGTGTTCTATATA
TAGCCTATCTTTAAGGTGACTACAGAGGGAATGCGAAGATAATTCGGCAA
TGTTGTGACAATCAAGTTGATGCCACACTAGAGGGGCGTGGTACATGACC
GGGCAATCAGCTTTATTAGAGTGAATAACAAAGACGCTGTTTTTGTCATT
ACGGTTGGCTGGGTTGTCGATGTCATATGGACGAGGATGGCAAGTGAATA
GATCGATTAATGATTtggttaaatcttttttttttaatttatgtaCAAGT
TTACAAGCTTCAAGTTTAAATAAACTGTTTATGTTTAGTGGTTTGTATTC
GACATTCAAAATAGAATTGTTTTCAACCTTGTTGTTAATGAAGGCATGAG
ATTTAGCCATGATTTTGTTAATTTGTTAATTTGTTAATTTGGTTCAGCCC
AGGGGTTTCTGGGCTTCCCCATGAAGTTATGCAGTATTAcacattgggct
attccaaaaaaaatttatacaggggtattgacgaacttttttcactaacc
cccctggaaattttgaataacaagTTATCCCTTGGAAATTAGGGGGTAGA
CCCCTCTGGAAAGTGAAATCTTGTGAAAAAGGGGCTGGAAAACAACTATT
GATGTCAGTTTATAAAGAAagaaccccctggaaaccttcaataaccccct
tggaaaatctgaaaaaggaacaaaaaccccttggaaaacCAAGGCTcaga
accccctggaaaagttcgtcaatacccctgtatggtttaaaaatggaata
gcccattgaaaaatggcttttttacatttttatcaataacttGGTAAGTA
TTGCAGTAATCTTGCTGAAAATAGGTGAAAATGACGATAATGATGTAACA
AAAAGTACtgcatcaaaaaatttcaaaaatatactcctcaaacaaggaaa
atgataaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAACCTGGACAGTTACAAAATATCATCTATTTACAATTGAAAAACCAA
AGTCTTTTGTCTTGAAAAGAATGAGAGATAAATcagtaacaaattaaaaa
tctatGGTGCAAAGTGTAACATTTCGCCCTAtgttttatgaacatgtccg
CTAAGGCGGGCGAAATTGCAGGGGGGTAAGCCTAAAGGTTACTTAAAATT
TGTAGAAAAAGAGCTTGAATTGCTGGTACTTCGAAGAAAGAAATGTTTAA
AGTTAAATGAATCATGAACATAGGCCATATTTTAGGAATTAATGGGATTA
GGGATTAGTGAATTAAAAGCGCTTTATATTCTATTTACACTCTACGTTGT
TGTATGAGTATGACGGTCAAAGTGGGTGCGTTTAAACTTGGCATAATGAA
ATTGGGTGTTAGAATGGCAGTGCTCCTCTCgtcttgaaaagctttgactt
ATGCCAATATCTTACTTTATATCCAATCCTCACACCAATACGCCAAAAGT
AATACTGCctcacgccgaatatattcggcaTGCTGTTCACTAATTCCAGC
CTggctgattttgcttgaaacgcaacgtattgggtgtaaacaaggacact
tgtatagcgtagctggactaagcacaaatttattttctttgaaccatGTG
TGTCGTCGTAATAATAGATATTGTCTTTCTTTGACCAATAAGAGGTCGTT
CCTCatgttttttcaaccaatcaggaatactttttgataaaagtacTTAA
CAATGAAAAACCATCGTCAGACAGATGGATTTTGCACAGAAATTTTGTTG
CTAaagatattttatgaaattcctTTGACATGATTgcaataacaaaaaaa
caacaatcgaacaatTACTTTATAATGAGTTTTATCACACCtttcaggcc
atattttagaaaggcagaaAAATGGCCTGCCTTTATACAATTTTCTTTCT
CGTGAATGATGTTTAGATTTTGCTTTTAGCAGCTGTAGTATGATGTATTC
CGTTCCTTGTTCGACATCTTGCTATAGCCATTATGAGTTTAGGCTATTTT
TTActcattctttttctttgttacaccttgaaataagttacgtaatttat
aATTTAACCTTTTCGAAGGACccttttttaaggtttttggcttataaatt
gatcaaacttatattttatttttaaaatcttcattcaaGATAATGTCAAA
TATAAAATCTTGCAAAAAAGTCCCTTATGAAAACTAAACTTTGCAACAac
taattatttcaattaatttgaaaaaaaatattctcaaccgcTGACCGGGG
TTTGCGGATTCGCTCCGACAGACATGTGTTAAAAAGAGAAGGAGAAATAG
CTGTTGTACTTAGTCCAGcttcgctatacaagtgtccttggtgtaaacat
accaaaaatagcaacaaaACTACTGACAAATAGTAACTAAGTGTTTTCGC
GTGTATTTGATTTTGCTATTttaaatttcgcaaaatttgGCCTAAAAGAT
TGCGAAATGAAGTACCCGCAAAATTTTGTACTATACAAAATATAAAACCA
ATAAGGTATCACTTTTTGCTCAATAGCTTTAGAATTGAATGCTCAACACC
TAGCTAGTAGGGTAACAGAACCTGTACACAGGCATTCAAGAAATGATTCA
TTGGAACAAATcatgaaaacatttgaaaatcaggaaatttgcACATAATT
GGTGTAAAAAGATATAGGCAACCATCAATAATATGTTCTGTTTTGGTTGC
CCGACCGACTCACCTTAAAAGCATAAATCCCGAGTCAGCTCAGTTGCAAT
AATAAAGCCTGCTTTACATCACCATTCGCTttaagtttttgtttacttca
cccacattgagtcccatttgagattttttccgtCTGACACCCTCATTGAA
ATTATCAAGTTGACATTCACTGACGTGGTAAAGGCAGTAGTCCCCTTAAA
GTCGGGCCATAAGTCGCCATAAGTCGGGTCCAATTTTTAGGGTCAACGCA
TTTcactggatttattttagcaaatTTAAAAAGGGATTCTATTTGTTGCC
AACTGGATTATTTGGGATTTactaaatttaaaaatccaCCAACATTTGCT
ACCGACCCACTAGATTTTGAGATGTTTTGTGACCCGAACAGAACATATTA
TTGATATACGCCATATGTATGTTTTCGCACATGATAGCGCAGATTCATCA
TTCACCCAatcaaaaagaatttctcagtctacgcaagttttttcaatctC
CACAGTTTTTAATCTCCACATGTCAagcatttttttcaatattcgcgaat
tcacaaaatcaaaaagaccTAAGTACATTGAGGAAGAAGTTAAAGTTTTG
ATGATTCTAAGCTTCTGAGTCACATCCAAGACTTCTAAGGATTCTTGTGC
AAATGCAACAAAAACGTCTCATTGGAACACATTTGTTTCAGTTATTAACT
TGCGTTATATTCGCTTTACTTCAACAAAAAACGAGGACATTAATTTACTG
TCAAAGAAACTGTTTTTGTGATTTATGATCCAGCCTTTTAGATCTAGGAA
ATGGGAGGAATTTTcaccaaacatcaaaattcagcTAAGCCAATTTTTGG
GTGCCCTGACCTGCCCTGACATTAAAATGACTTTCATAGTTCTACcctcc
aaattttttttctttttcattaggCTTATGAATTGAGTACTTTAACTGGA
ACACAAGTTATGCTTTTGGTCGCTTCAGAGACTGGCCATGTCTACACATT
CGCAACAAGGAAATTACAACCCATGATTACATCAGAAAGTGGAAAAGCAC
TAATCCAAACATGTCTGAATTCTCCAGATCCTTCCCCCGCTCAACAGTTG
ACACATTCAGATAATGGAATACTCCCTGACTCAGCAGCAGTTACTGTCTT
AGGAAGTTCTCGCACAGTTGTAGGGAATGAAGATCCTGAGATTGCGTACA
CTACACGAGATGAAGACATGAAGGTATTTGCATATATTTGTTTCTATGGT
TTATTCAAGTGTTAAGAAAATGTGTTTTACTTGTACAGTAGACTCTTAcc
tattcgaacttctataattcgaaccaattcccagtccccgtcaaggagaa
aacctcttaaaatactttctaaaattcgaatctctctgttattcgaacaa
tCAATATTCCCCGTTAGAATTCGAACTAGAGAGAGTCAACAATTACAGTA
ATTATTCATTGGTTGGAATGATTTGGACACATTGGCTTATTTCGATTCTC
ACTCTTTTGTAACCACACAGACTTTTTGGGCCATACTGATCACCAATACT
TTAAGATCGAAATTAATACCACCATAAGTACATaataagcaaacaaaatt
ttctaTACAATTTgattgacgtcatcaaaaccacAGTAGGAAGTTGAAAC
AGGAACAACTCGTTAATGTAATTTGTAATCATCTTTcctaaaaaggaaaa
atgagAATTTCTTTCGGTTTGATGTTTCCATATAGTTAATCATCAGACCA
GGAAgtagttcaaaatattttctcctCCACTACTGTTCCATGTTACTTGT
TACAATGAGTACTCGAAGTTTCATAACCTCATTCCCAATTAATAGTGAAA
AGTATAGCCCTTACACAGGGACCTTCAAATCCTGACAACCTTAAATACAT
GATCAATTTAGCATTCAAAACACTTGCTAAAAATTCGCTACACAgccaaa
aagctttaaaaatccaataattttttgtgaaattttggtTCGAAGAACCT
TAGAAATGAGAGAAATTCAGCTATTTTTACATTCTTTTTATCTTGGTCAG
GCATCACAAGCAAGTTCTCCGCCGATCGGCACCATCAATTACGTCAATCA
ATCTGGACAATCTTACCCTATGACCGCTTACATTGCTCCGACCGTCTCCA
ACCAAACAACCATTCTGGCTCCAAGTGTGAACAACAACCAAAGTGGCACC
ACTGTTCAACTGCAAGCTCCTACTGTTGCCGCCGCTACCCAAAATAACCA
ACCTCAGGTAAAATGACTGTAATTGGTTTGCTTGAACTGGAACATTCTTT
GAGATTTTGCTTCCAATATTTTTCCATATATTTTTATTCACGATTACTAT
TACCCAATATTACAATAGTCTCAACTCTACCAGCGACCTTAAATGTTCTG
AAAAGTGTAGGAGCCTCGGGAACCCTTACCCtaattttcgatatccgatC
TTATAACCGAACTGAAAAGAACGAAATAGGGAATAAGAATTAGCGGCAAC
TATTAATAGTACTAGGCTTCTTGTAACTAACTCATTGTCACGCTGACACT
TTCAGATCATCTCAGGACAATTACAATTACATCGGATCCACCCACAAAAC
ATTCTGCTCACCGGAAGTTCGCCCGTCTTGCAATCCAACCACGTCATTCT
GAATAATTCGTCCACCACTCAACCAGTCGTTCTTGATGCTTCGCAAAATA
ACTCCGCAACTCGCCACACAACCTCCAATCAAGATGTCATTGCTCTCGTT
AACCCAGACGCTTCGTCTCGTTTACAGATGGTTTACAGCCCGAGTGGAAG
TGCGGTCATATACACACCGCAAGGGACAAACTTAAAAAGGGCAAACACTA
CTAATATATCGAATGCAGATGTAGTTGCGTTACAGCATACACCAGTTATA
CAGACTTCAGCCATGAACCAAGATGGCGGTAATGGTTGAGCTTTCTCTTT
TCATGGTGTCTTTAGTATGTCTTCGGTTATTTCTTCAGAGAATTCCCAAA
AAGCAGATCGGACTTGAGCGTTGAATTACTGTAGAGTCATCATATAACTC
TAACATATTCGAAGTTTTCTCACAACAAGCGCCTAAGACATAAGCCCCAA
ACAAATTATTCGCTTTCTCTCAGGTGTTTGAGGCTCAACTGTTATATGTT
GCAGATCTAGAATATTGGGTCTTCCGTGAAGAAAAAAAGCAAGGCTATAC
TGTAGGTGTCATGAATAGCTGAAATCAGTGTGTGAatattgtaaaatgta
aaaaaaacttttttgattggtTTTTGAAGTGAAATTTTTGTGCATGAGAT
GGCTGATTGTTGTTATTAAAATGTCGAAATAATGTAAATTCGGTAATAGA
GTCTGGTTTACTCAATTATCGACATCATTGATTTGGGTTTTGGTATGATG
GTTTTGTTTTAGTTCAAGTTTGTATATAAATAGCTCTCTAccgagtttgt
ttttttttgtataatttcAGCTACATTTTCTTCATGTAGATTTAGGATGG
TTAAAAGTGTTCTAATTTTTAGCTTTCTTTATAACTTTTAGTTGattctt
tcaaacaaaattttggataattaATGCCAATGAATTTtctaatgattttt
ctttttcaatttatctTTGTACATagttatttttttaagttttattcaAC
ATGATTTATATTTTGGTTCAAAAACCCTAAAGACAGAAAAGTACGTAAAC
AGAG Coding sequence (CDS) from alignment at sc0000436:26545..36098+ >TCONS_00022893 ID=TCONS_00022893|Name=TCONS_00022893|organism=Clytia hemisphaerica|type=CDS|length=4884bp|location=Sequence derived from alignment at sc0000436:26545..36098+ (Clytia hemisphaerica)
ATGCAAAGTGCGAACGTGTTAGGATACACAACAACAGCAGGTTCTGCTGG
AGGAATTCAGCAAGAAGGTCCAGGTAGAGCTCCAAATGCAGGGGAAATCA
ATGTACCTGCTCCAAGGTCCTTTGTCCAGCCCCTCATCGTCGATGAGACA
AAGCAATATATGGAGGGGCTCGTCCCAGACGATGACGATGATGGACAGGA
TGACGATGGGTGTGATAAAAAGGGGTCCAAGAAAACAAGAGGAAGGGTGA
AAATCAAGATGGAATTCATTCAAAACAAGCTTAGAAGATACACCACCTTC
AGCAAAAGGAAGACAGGCATCATGAAAAAAgCTTATGAATTGAGTACTTT
AACTGGAACACAAGTTATGCTTTTGGTCGCTTCAGAGACTGGCCATGTCT
ACACATTCGCAACAAGGAAATTACAACCCATGATTACATCAGAAAGTGGA
AAAGCACTAATCCAAACATGTCTGAATTCTCCAGATCCTTCCCCCGCTCA
ACAGTTGACACATTCAGATAATGGAATACTCCCTGACTCAGCAGCAGTTA
CTGTCTTAGGAAGTTCTCGCACAGTTGTAGGGAATGAAGATCCTGAGATT
GCGTACACTACACGAGATGAAGACATGAAGGCATCACAAGCAAGTTCTCC
GCCGATCGGCACCATCAATTACGTCAATCAATCTGGACAATCTTACCCTA
TGACCGCTTACATTGCTCCGACCGTCTCCAACCAAACAACCATTCTGGCT
CCAAGTGTGAACAACAACCAAAGTGGCACCACTGTTCAACTGCAAGCTCC
TACTGTTGCCGCCGCTACCCAAAATAACCAACCTCAGATCATCTCAGGAC
AATTACAATTACATCGGATCCACCCACAAAACATTCTGCTCACCGGAAGT
TCGCCCGTCTTGCAATCCAACCACGTCATTCTGAATAATTCGTCCACCAC
TCAACCAGTCGTTCTTGATGCTTCGCAAAATAACTCCGCAACTCGCCACA
CAACCTCCAATCAAGATGTCATTGCTCTCGTTAACCCAGACGCTTCGTCT
CGTTTACAGATGGTTTACAGCCCGAGTGGAAGTGCGGTCATATACACACC
GCAAGGGACAAACTTAAAAAGGGCAAACACTACTAATATATCGAATGCAG
ATGTAGTTGCGTTACAGCATACACCAGTTATACAGACTTCAGCCATGAAC
CAAGATGGCGGTAATGGTTGAATGCAAAGTGCGAACGTGTTAGGATACAC
AACAACAGCAGGTTCTGCTGGAGGAATTCAGCAAGAAGGTCCAGGTAGAG
CTCCAAATGCAGGGGAAATCAATGTACCTGCTCCAAGGTCCTTTGTCCAG
CCCCTCATCGTCGATGAGACAAAGCAATATATGGAGGGGCTCGTCCCAGA
CGATGACGATGATGGACAGGATGACGATGGGTGTGATAAAAAGGGGTCCA
AGAAAACAAGAGGAAGGGTGAAAATCAAGATGGAATTCATTCAAAACAAG
CTTAGAAGATACACCACCTTCAGCAAAAGGAAGACAGGCATCATGAAAAA
AgCTTATGAATTGAGTACTTTAACTGGAACACAAGTTATGCTTTTGGTCG
CTTCAGAGACTGGCCATGTCTACACATTCGCAACAAGGAAATTACAACCC
ATGATTACATCAGAAAGTGGAAAAGCACTAATCCAAACATGTCTGAATTC
TCCAGATCCTTCCCCCGCTCAACAGTTGACACATTCAGATAATGGAATAC
TCCCTGACTCAGCAGCAGTTACTGTCTTAGGAAGTTCTCGCACAGTTGTA
GGGAATGAAGATCCTGAGATTGCGTACACTACACGAGATGAAGACATGAA
GGCATCACAAGCAAGTTCTCCGCCGATCGGCACCATCAATTACGTCAATC
AATCTGGACAATCTTACCCTATGACCGCTTACATTGCTCCGACCGTCTCC
AACCAAACAACCATTCTGGCTCCAAGTGTGAACAACAACCAAAGTGGCAC
CACTGTTCAACTGCAAGCTCCTACTGTTGCCGCCGCTACCCAAAATAACC
AACCTCAGATCATCTCAGGACAATTACAATTACATCGGATCCACCCACAA
AACATTCTGCTCACCGGAAGTTCGCCCGTCTTGCAATCCAACCACGTCAT
TCTGAATAATTCGTCCACCACTCAACCAGTCGTTCTTGATGCTTCGCAAA
ATAACTCCGCAACTCGCCACACAACCTCCAATCAAGATGTCATTGCTCTC
GTTAACCCAGACGCTTCGTCTCGTTTACAGATGGTTTACAGCCCGAGTGG
AAGTGCGGTCATATACACACCGCAAGGGACAAACTTAAAAAGGGCAAACA
CTACTAATATATCGAATGCAGATGTAGTTGCGTTACAGCATACACCAGTT
ATACAGACTTCAGCCATGAACCAAGATGGCGGTAATGGTTGAATGCAAAG
TGCGAACGTGTTAGGATACACAACAACAGCAGGTTCTGCTGGAGGAATTC
AGCAAGAAGGTCCAGGTAGAGCTCCAAATGCAGGGGAAATCAATGTACCT
GCTCCAAGGTCCTTTGTCCAGCCCCTCATCGTCGATGAGACAAAGCAATA
TATGGAGGGGCTCGTCCCAGACGATGACGATGATGGACAGGATGACGATG
GGTGTGATAAAAAGGGGTCCAAGAAAACAAGAGGAAGGGTGAAAATCAAG
ATGGAATTCATTCAAAACAAGCTTAGAAGATACACCACCTTCAGCAAAAG
GAAGACAGGCATCATGAAAAAAgCTTATGAATTGAGTACTTTAACTGGAA
CACAAGTTATGCTTTTGGTCGCTTCAGAGACTGGCCATGTCTACACATTC
GCAACAAGGAAATTACAACCCATGATTACATCAGAAAGTGGAAAAGCACT
AATCCAAACATGTCTGAATTCTCCAGATCCTTCCCCCGCTCAACAGTTGA
CACATTCAGATAATGGAATACTCCCTGACTCAGCAGCAGTTACTGTCTTA
GGAAGTTCTCGCACAGTTGTAGGGAATGAAGATCCTGAGATTGCGTACAC
TACACGAGATGAAGACATGAAGGCATCACAAGCAAGTTCTCCGCCGATCG
GCACCATCAATTACGTCAATCAATCTGGACAATCTTACCCTATGACCGCT
TACATTGCTCCGACCGTCTCCAACCAAACAACCATTCTGGCTCCAAGTGT
GAACAACAACCAAAGTGGCACCACTGTTCAACTGCAAGCTCCTACTGTTG
CCGCCGCTACCCAAAATAACCAACCTCAGATCATCTCAGGACAATTACAA
TTACATCGGATCCACCCACAAAACATTCTGCTCACCGGAAGTTCGCCCGT
CTTGCAATCCAACCACGTCATTCTGAATAATTCGTCCACCACTCAACCAG
TCGTTCTTGATGCTTCGCAAAATAACTCCGCAACTCGCCACACAACCTCC
AATCAAGATGTCATTGCTCTCGTTAACCCAGACGCTTCGTCTCGTTTACA
GATGGTTTACAGCCCGAGTGGAAGTGCGGTCATATACACACCGCAAGGGA
CAAACTTAAAAAGGGCAAACACTACTAATATATCGAATGCAGATGTAGTT
GCGTTACAGCATACACCAGTTATACAGACTTCAGCCATGAACCAAGATGG
CGGTAATGGTTGAATGCAAAGTGCGAACGTGTTAGGATACACAACAACAG
CAGGTTCTGCTGGAGGAATTCAGCAAGAAGGTCCAGGTAGAGCTCCAAAT
GCAGGGGAAATCAATGTACCTGCTCCAAGGTCCTTTGTCCAGCCCCTCAT
CGTCGATGAGACAAAGCAATATATGGAGGGGCTCGTCCCAGACGATGACG
ATGATGGACAGGATGACGATGGGTGTGATAAAAAGGGGTCCAAGAAAACA
AGAGGAAGGGTGAAAATCAAGATGGAATTCATTCAAAACAAGCTTAGAAG
ATACACCACCTTCAGCAAAAGGAAGACAGGCATCATGAAAAAAgCTTATG
AATTGAGTACTTTAACTGGAACACAAGTTATGCTTTTGGTCGCTTCAGAG
ACTGGCCATGTCTACACATTCGCAACAAGGAAATTACAACCCATGATTAC
ATCAGAAAGTGGAAAAGCACTAATCCAAACATGTCTGAATTCTCCAGATC
CTTCCCCCGCTCAACAGTTGACACATTCAGATAATGGAATACTCCCTGAC
TCAGCAGCAGTTACTGTCTTAGGAAGTTCTCGCACAGTTGTAGGGAATGA
AGATCCTGAGATTGCGTACACTACACGAGATGAAGACATGAAGGCATCAC
AAGCAAGTTCTCCGCCGATCGGCACCATCAATTACGTCAATCAATCTGGA
CAATCTTACCCTATGACCGCTTACATTGCTCCGACCGTCTCCAACCAAAC
AACCATTCTGGCTCCAAGTGTGAACAACAACCAAAGTGGCACCACTGTTC
AACTGCAAGCTCCTACTGTTGCCGCCGCTACCCAAAATAACCAACCTCAG
ATCATCTCAGGACAATTACAATTACATCGGATCCACCCACAAAACATTCT
GCTCACCGGAAGTTCGCCCGTCTTGCAATCCAACCACGTCATTCTGAATA
ATTCGTCCACCACTCAACCAGTCGTTCTTGATGCTTCGCAAAATAACTCC
GCAACTCGCCACACAACCTCCAATCAAGATGTCATTGCTCTCGTTAACCC
AGACGCTTCGTCTCGTTTACAGATGGTTTACAGCCCGAGTGGAAGTGCGG
TCATATACACACCGCAAGGGACAAACTTAAAAAGGGCAAACACTACTAAT
ATATCGAATGCAGATGTAGTTGCGTTACAGCATACACCAGTTATACAGAC
TTCAGCCATGAACCAAGATGGCGGTAATGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022893-exon-sc0000436-1491911889:26545..27131 | TCONS_00022893-exon-sc0000436-1491911889:26545..27131 | Clytia hemisphaerica | exon |
| TCONS_00022893-exon-sc0000436-1510915933:26545..27131 | TCONS_00022893-exon-sc0000436-1510915933:26545..27131 | Clytia hemisphaerica | exon |
| TCONS_00022893-exon-sc0000436-1575043694:26545..27131 | TCONS_00022893-exon-sc0000436-1575043694:26545..27131 | Clytia hemisphaerica | exon |
| TCONS_00022893-exon-sc0000436-1491911889:33318..33617 | TCONS_00022893-exon-sc0000436-1491911889:33318..33617 | Clytia hemisphaerica | exon |
| TCONS_00022893-exon-sc0000436-1510915933:33318..33617 | TCONS_00022893-exon-sc0000436-1510915933:33318..33617 | Clytia hemisphaerica | exon |
| TCONS_00022893-exon-sc0000436-1575043694:33318..33617 | TCONS_00022893-exon-sc0000436-1575043694:33318..33617 | Clytia hemisphaerica | exon |
| TCONS_00022893-exon-sc0000436-1491911889:34445..34651 | TCONS_00022893-exon-sc0000436-1491911889:34445..34651 | Clytia hemisphaerica | exon |
| TCONS_00022893-exon-sc0000436-1510915933:34445..34651 | TCONS_00022893-exon-sc0000436-1510915933:34445..34651 | Clytia hemisphaerica | exon |
| TCONS_00022893-exon-sc0000436-1575043694:34445..34651 | TCONS_00022893-exon-sc0000436-1575043694:34445..34651 | Clytia hemisphaerica | exon |
| TCONS_00022893-exon-sc0000436-1491911889:34950..36098 | TCONS_00022893-exon-sc0000436-1491911889:34950..36098 | Clytia hemisphaerica | exon |
| TCONS_00022893-exon-sc0000436-1510915933:34950..36098 | TCONS_00022893-exon-sc0000436-1510915933:34950..36098 | Clytia hemisphaerica | exon |
| TCONS_00022893-exon-sc0000436-1575043694:34950..36098 | TCONS_00022893-exon-sc0000436-1575043694:34950..36098 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000436 | supercontig | sc0000436:26545..36098 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0046983 | protein dimerization activity |
| GO:0000982 | transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding |
| GO:0000987 | core promoter proximal region sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0045944 | positive regulation of transcription from RNA polymerase II promoter |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0045944 |
positive regulation of transcription from RNA polymerase II promoter |
| molecular_function |
GO:0000987 |
core promoter proximal region sequence-specific DNA binding |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0046983 |
protein dimerization activity |
| molecular_function |
GO:0000982 |
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding |
Blast
BLAST of TCONS_00022893 vs. Swiss-Prot (Human)
Match: SRF (Serum response factor OS=Homo sapiens GN=SRF PE=1 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 3.417e-47 Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = 3
Query: 492 TRGRVKIKMEFIQNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSESGKALIQTCLNSPDPSP 752
TRGRVKIKMEFI NKLRRYTTFSKRKTGIMKKAYELSTLTGTQV+LLVASETGHVYTFATRKLQPMITSE+GKALIQTCLNSPD P
Sbjct: 140 TRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLNSPDSPP 226
The following BLAST results are available for this feature:
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