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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00022893-protein ID=TCONS_00022893-protein|Name=TCONS_00022893-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
MQSANVLGYTTTAGSAGGIQQEGPGRAPNAGEINVPAPRSFVQPLIVDET
KQYMEGLVPDDDDDGQDDDGCDKKGSKKTRGRVKIKMEFIQNKLRRYTTF
SKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSESG
KALIQTCLNSPDPSPAQQLTHSDNGILPDSAAVTVLGSSRTVVGNEDPEI
AYTTRDEDMKASQASSPPIGTINYVNQSGQSYPMTAYIAPTVSNQTTILA
PSVNNNQSGTTVQLQAPTVAAATQNNQPQIISGQLQLHRIHPQNILLTGS
SPVLQSNHVILNNSSTTQPVVLDASQNNSATRHTTSNQDVIALVNPDASS
RLQMVYSPSGSAVIYTPQGTNLKRANTTNISNADVVALQHTPVIQTSAMN
QDGGNG Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0046983 | protein dimerization activity |
| GO:0000982 | transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding |
| GO:0000987 | core promoter proximal region sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0045944 | positive regulation of transcription from RNA polymerase II promoter |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0045944 |
positive regulation of transcription from RNA polymerase II promoter |
| molecular_function |
GO:0000987 |
core promoter proximal region sequence-specific DNA binding |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0046983 |
protein dimerization activity |
| molecular_function |
GO:0000982 |
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002100 | Transcription factor, MADS-box | PRINTS | PR00404 | MADSDOMAIN | coord: 102..117
score: 67.76
coord: 117..138
score: 30.98
coord: 82..102
score: 43.89 |
| IPR002100 | Transcription factor, MADS-box | SMART | SM00432 | madsneu2 | coord: 80..139
e-value: 1.7E-28
score: 110.6 |
| IPR002100 | Transcription factor, MADS-box | GENE3D | 3.40.1810.10 | | coord: 92..164
e-value: 5.0E-23
score: 80.6 |
| IPR002100 | Transcription factor, MADS-box | PFAM | PF00319 | SRF-TF | coord: 89..136
e-value: 4.3E-20
score: 70.8 |
| IPR002100 | Transcription factor, MADS-box | PROSITE | PS00350 | MADS_BOX_1 | coord: 82..136 |
| IPR002100 | Transcription factor, MADS-box | PROSITE | PS50066 | MADS_BOX_2 | coord: 80..140
score: 23.507 |
| IPR002100 | Transcription factor, MADS-box | SUPERFAMILY | 55455 | SRF-like | coord: 80..159 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..35 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 56..79 |
| IPR033897 | MADS SRF-like | CDD | cd00266 | MADS_SRF_like | coord: 81..162
e-value: 1.59603E-28
score: 105.805 |
Blast
BLAST of TCONS_00022893-protein vs. Swiss-Prot (Human)
Match: SRF (Serum response factor OS=Homo sapiens GN=SRF PE=1 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 1.115e-51 Identity = 85/92 (92.39%), Postives = 87/92 (94.57%), Query Frame = 0
Query: 74 KGSKKTRGRVKIKMEFIQNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSESGKALIQTCLNSPDPSP 165
K KKTRGRVKIKMEFI NKLRRYTTFSKRKTGIMKKAYELSTLTGTQV+LLVASETGHVYTFATRKLQPMITSE+GKALIQTCLNSPD P
Sbjct: 135 KPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCLNSPDSPP 226
The following BLAST results are available for this feature:
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