TCONS_00022892 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022892
Unique NameTCONS_00022892
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length989

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022892 ID=TCONS_00022892|Name=TCONS_00022892|organism=Clytia hemisphaerica|type=transcript|length=989bp
ATATTTTCAGGCTAGTTTTGTCGCCGAAACGGATTGTAGCGTGTGCACTT
TCCAGCTGATTTGTTTTGTGGCTGACAAAAGGACGCGTTGCACCAAAAGT
TCCTAAAGATGTCTTTTGAAGTCCTTTGCTTCATCCTAGCTCTTCTCATT
TCAATTGGTCTAATTTTCATGGTGATATGGAACgtGATTGCATTTGATGA
CTTGCGCACAGACTACAAAAATCCAATAGACTTATGTAATTCTTTAAACC
CGTTGGTGTTGCCAGAGTATGGAATTCACGCCTTTCTTTGTGTCATGTTC
TTGTTTGGTGGATTTTGGGTCATGTTTTTGTTGAATCTTCCGTTATTGGC
GTACCACGTACATAGGTACATGACGAGACCAGTGATGAGTAACGTGGGTG
TTTATGATCCTACTCAAGTCATGAATTCATCCGAATTGAATCGTTGTCAA
CGCGAGGGATGGGTCAAATTGGCCTTTTTCCTCATCTCCTTCTTCATCTA
TTTGTACCGcaTGTTATATGCTCTACTTTCGTAACGGATTCTCGTATGCT
GCAAAACCAGTTCCATCGAAACATGAAGAAAACATTTCGACCAACGTGAC
AGTCAACTAATACTTATATTTATGAAGAGGATTCAGACTTTCTCACCTCC
AGGTTACCTAAGGGAGGTCAACCATGTAATAATATTAGTTAGGTTTATTG
TgtaatattgaatttttttattgtttagttTTTCCtctatttcctttttt
ttcctaaataaaatttcttcttgtCAAAGACAGcgaatttttaacaaaaa
tattttgatgttgaCATTTTTGATCAAGTTAGGTCCCCCCCCTACCTCAA
ATGAGATCATAATAGCGGCTTGAAATTTATGGACAACAATGACTAAATAC
TTTTAATACAATTTATTCAAACTTGATGGACGTATAAAAACTTAGTGCTT
GCTGGTTGGCTCATATAATTTACAGCAATttaaaaaggc
Run BLAST on NCBI

protein sequence of TCONS_00022892-protein

>TCONS_00022892-protein ID=TCONS_00022892-protein|Name=TCONS_00022892-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MSFEVLCFILALLISIGLIFMVIWNVIAFDDLRTDYKNPIDLCNSLNPLV
LPEYGIHAFLCVMFLFGGFWVMFLLNLPLLAYHVHRYMTRPVMSNVGVYD
PTQVMNSSELNRCQREGWVKLAFFLISFFIYLYRMLYALLS
Run BLAST on NCBI

transcript from alignment at sc0000436:8978..25450+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022892 ID=TCONS_00022892|Name=TCONS_00022892|organism=Clytia hemisphaerica|type=transcript|length=16473bp|location=Sequence derived from alignment at sc0000436:8978..25450+ (Clytia hemisphaerica)
ATATTTTCAGGCTAGTTTTGTCGCCGAAACGGATTGTAGCGTGTGCACTT
TCCAGCTGATTTGTTTTGTGGCTGACAAAAGGACGCGTTGCACCAAAAGT
TCCTAAAGATGTCTTTTGAAGTCCTTTGCTTCATCCTAGCTCTTCTCATT
TCAATTGGTCTAATTTTCATGGTGATATGGAACGTAAGTATCTTTATTCT
TATTTATCTTTCTTAAAGTCTTTAGAAAAGTTTCCCCTACTTTGCAATTA
ATGCTTGACAGTTTTAGTGTCAGTCAGGATTAACCGCCtaaataggaaca
aatttttcgatttcacaaatATTCCTATCTAGGATATAGGTACTTATCTA
GGAATAATTTATATTCTAAGCtaggaacattttctttcttctccaaattt
ttcctttcaaaacaaagtcgCATGTTCAAGTTATGACTaatccaggcgta
gttaatcgatataatcgataatcttgagtaatcgataaataatcgataag
taatcgatggattagatatcgattaaccgatagaatcgNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNTCAATACTGCATTGATGAATCTTTCTG
AAATTTGGAACACAGTTAGAAAATAcctaaatgaaaacatagatgaTAAT
TGATACATGcgactttttttagttttaatgtaaaataaaaatttcttaaa
tattcttatcttagaataaaaaatattcctAGATAAGTACCTATATCCTA
GATAGGAATATTTGTGAAttcgaaaaatttgttcctatttaGGCGGTTAA
TCCTGACTGAGTGTGCGGAAGTACAGCAGTAGGGTGGTCAGAGGAAATTT
CAAACTTACTTGCAGAATACCAAACCAAGtttaatggaaagccataacca
tcagaagaaaaatgaggggtcatttaccttccaattctttaaagttccaa
agatattccattttgaagttcaatttttcaggCATTTCCGTGCACGCATA
GCCagccattttgtaccttcattatggcaccaaaagcgaaagtgttttat
gaaaaattccgcGCGGGAGGTTTggtgcgagttttattttccgtagatgt
agttgaaacgggggtaattacaccataatcttccccttagcgcttgccac
cggaaacagcttgattcttacttttttcacatttggaaagaaatttaaac
attgttctttctaaaaaattcacgttcgataaaaaaatttgattttttca
atgaaaaaaacgcaatttaagtacataatttgacttcctgaaaaatatac
gttgctccaaccaacgaacgtggtacgtctcaaaagctaaactattGCGG
GGAACAATGCAAAAAATTCCAGGTCGATAGCTGTTtcgggtggctagcgc
tttggattttagaaccccCGGATAAAAAGTTTTGCCGTGCCGCaaacaag
aagtttgaaaaaactcactcacgagtactcattttcaaattttgaaggaa
aatgaagacatgatgtgctgattttttctgcaaaagaaagctgaataaat
tctctacaCTTTGAAACAAATACTTATGTTAAAAGAGGTTTCCTTCTTTG
AGGTatgtaagcttgaatattttttttcgaaaatctatgttttgttactg
ccgcaTGTGTAAGGCCCGACCTTCCTAACAGCAGTATAGTCAGTCAgtac
ctttagccaaattaggaatatttttcttacttttactagtattcctaatt
aggaagaaaaaaattcttaattagGAATATGAAGCAAATACCTAGATTTT
CTcctccaaaaatagaaaaaatcgcactttaaaaaaaagtatatacTTCA
TCATAAGATTCTTACCATTCCATTTAGGTGGGAAAAAAAGATTGAGCTCT
TGACTTGCTCGGGGGACCGAGCTATAATCCCTAGAAAAAACTTCACTTCT
CCCGGTATAAAATTGACATTTATTTATAAAacactttctgtttttcttcg
tCATAATAAAAACGGCCGTTCGTTTAATTCctaatttggaattatttttt
tggggCGTTAATAATTCCACCATccgcaaaagaaatttttcaattttttg
cacagttatCATATTTGGTATATATACCAAATCTATTGGTCATACTTGCA
ATTTGCGAATGTAGCTCGTTTCAGagatattttaaaacttttaaatattt
cttcctaattaggaatttttttcttcctaattaggaatactagtaaaagt
aagaaaaatgttcctaatttggctaaaggtGCTGACTGATGGTCattcta
aacttaaactcctatatcaggattagaaactaggctagtcttacctcttt
tatcttttcttttacaacaatacaatgctgataagttgacacaacacatg
tgcacatgtacattgacaagtaatccctgagagaagtttttagaaCATTA
TAgtaatctgcaacaaaaacgaaagtggtctcttctgcTGATTGCTTCTC
AGCGCTCCTTTCCAGATGTTTATAAAATCTCCACCAATGAGGCtgccgca
tttcaaacggcccttctttttggcacctgtggcctttcagtgccttgcac
gacgggcggctgtaaaatcccacccttcatatatttgtttcaatccgtga
tccttaggcttaggttttttctcatcttctactgaagaaagcgggaattt
gatgcgagagctTGATTGTCAACAGactgccgtaaaaaatcatggaataa
aagaagaacttaaaatcttaaatattttcattttgaagaataggtgcaaa
aaagtgaaatatagaaaagtttcatttttcattgcattattcgaaatggg
ggatttggaaaattttctatgTTTAACTATGGGCGAGCACCCCGTTGCTA
agatgttggcttgaaatcgaaaatgaaaccactcaaaacgaaagtaaaat
cggcccgtactcgaaatcccgtaatcttgatatacgagtttaagtctata
ctgataGTAGAACTTTTTATCTGATCAAAATCAGGTTTTATTAGCCTCGC
tcggaatccaagctcataattttagaaaaaacaaaaaatacttcacctca
caaaattttaaaactatgtatatatgtataaaagttgcgaagcgatatCA
AGGCCAGGTCACTCGCGATTAGCAAATTGCAATGCAAAGCAAACAAAAAG
ATAGAAAGTATTGAATCCACCCACAACAGGTCCCAAGATCTCAAGGCTGC
AACCATGGGTTGTCATGAAACTTTCACAAGCAAACCTTTATTGGTTAAGG
TAGGGCAGCCAAAGGTAAAAAGGGAGGTCAGACGAAATttctaaatcatt
ttcaaaatgtcaaaccaagtttaatgaaaagcccttatcctcagaaaaaa
aatgaagggtCACTTATCTTTCAACCTTTAGTAGTTTTttagatattcca
ttttgaagttccattttttttaaagatttctgtACAAAAACCTCCTGCCA
TCTTGTAACATCTCCACGACACTGAAGttcctcgatattccaggattaga
aaaagctatacctgttatcttttttctttaaagaatcaacaagccatcaa
catcgataaattacacacattttcctcagaaacttttaaaattatctgtc
attatgactttcttgaagccgttccgaaattaaccaatcaggtTAGGTAt
tggaattcctatgggagttcttttccgagatttgtaaaatagctaagtca
gcaaaaaaacttttcccgggggtttgaggaatcaacagaactgttatcgt
ttgttttttatttaaccatatatatttaaatttgcgctcgaAAATACTTA
AGTAAATAAGTTAaacgtagtggtctaaagaaacgactattcttttttag
aatcaaccttatATACCCTATATAACcctatatttataaaaactagattg
ctgacgtgtgaaaAGGAATGTCAGCGTgaatgatccttttgtttcgataa
taacatcaaagcgggaactaattttcccttcgtttctttctttccttttt
ctttctcataacttcGAGCTTTCCCTCAGACTCTCCCatgcgtggttagc
tcaagtggTTAGGGCATCTGTCTCGTAAGCATGAGTTTCTGAGTTCGATC
CCTTCCTCCGggtgtcaattttttcaattcttcaaatttcttattttaat
tctctttctattaaaatgaaggtcaatcaaacaagtaactagcatatact
acctccgctctctgtgtaaggtttagataagctatgatagcatcacttaa
taagaacttttttaagttttttttttcttcaatctttttcttttaccaca
agcgattattcaaggctgaTACATTGAAGAACGGGTATAGGCGTTTGCGC
CTGCGTTTGGtgactgacagtttcagtttcagtttcactactttcacttt
cactctcattttcagccagcgagtgagcgagcatgataattgatttccgg
gtcaaaatgtttgacacttgatccaatcgtttgGTTATCTTTCTTGTGTG
GTCgtcatttgaatttcagtattcagtgcttataaaatacggttgttata
aGGGTATCAGAGGGAGCAGATCATAGATTCAAATTGAAcgcgtaattact
aatagcaattaacattacataacgcgtcgatatctcttcactcNNNNNNN
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TTCCACatgtcagcaatctagtttttatatttataaaaactagattgtaa
ggttgattctaaaaaagaatagtcgtttctttagaccactacgttgttaa
taatattcaatatactctTTGTAtggtagattcgctggattttggtattt
gggattcggtattcgggattcaaaaTCAGGATTCGAAAAACGTCAATAAA
AATTTACTGACTAATGCTATAAGGATtaagaatttggaaaaaaaatccaa
aaaagggcGTGGTCAATTTGTtacttagggaaattccctatttcgATATT
CAGCAATTTTCCAACAGTGGAACTTTGAAATGCTCTCCAGGCTTGGGAAA
TTGCTCAATTcagcggcggatctgagggggttcaaatggttcagctgaac
accccaacccttttagtaaataaaaaatacaaagaaaggaattcaagtga
aatctagttttctgatcggaactgatttttcttctcGTTTATCTCtatta
ttttaccaggggttgTATGCGACGTGCGCTTCCATGGTGTGCACGACAGA
CTTAcctttttccgcactaaaaaatctttaggttatgtgtgtacggcgta
gctagctttcccgcgctgtaaagaaaatcttttttatgattttttttgcg
gGATTACATATCTAGCTGTTTCTGTGCTaggaaaatctttaattttgaac
ctggttcagaaaatgcatccagtgaaatggcaaatttgaggtggttcaag
gaaatttctcgaaaatacgaGACCGAACCTGGTTTTGAGCGTGAAAGATT
tcctacaaaaataactttcagtcgcatgtcgtcgccggcaaaatattgaa
atgatttgaagggtaGCCATTCGTACGGCANNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTCTTGTGCT
TAATTTTAGGgggtcatttttgcaattttttggtaaaaatcacccaatta
gcattttgtaatgacctccaatttatgaaattttcctgataaagtgccaa
aaccttcattttccttttttttgggNTTGTTTTTTTAGggggaaaatcac
cccaaaatcagttaataatgaccccccattttatgaattttctctgagag
tactgcccctgcatcttccaccccctacaaGTAAGCATAAGAGAGTACGA
TTGAATGCAGAATTTATCAAATGATATATacaaactttttactttgaatg
taaaaaatacTCTTTTATGAGATTCATCTAATTTCTGAACGAGAGCTAGA
ATTTCTTGAGTCTATTTGCACATAAATACATTAGACAGTATCAGTGCTCA
TGGTGTACTccactttttggcaatcttttatttttccatcttaagaatat
tgtattcccttgtatgtattatataaacaatctcctttattttttaactt
gatcacttttttcaaaatattattcatttctggttttataatgtaTATAA
ACATACttaacatgaaaagtttttgcttgattgtcagccaattaattcGC
TACAAAGAATTCCCATGAAAAATGGTTGCAAGAATAAATTATCTAAAATt
ttttactatgttttaaatgaaactgaagtgtgtaaagtatttaatattac
acattgtcttattttttcttcaaacttttcttcaaaaccatttatttgct
cttttatccatggctttctcaaaaacactttctgcaagaaccatgaatat
ataaaagaatatacacAAACAAGCAGTTTTGAGCATGATCTGGGTGTCTG
TTTCATCAAAATAGAAgctcaaaccaaagaaatataagaaatataatact
cttatatttctttgctcAAACTACTTTTCCGTTTTATGAATGTGTTGTGt
gataagattgaaaagaagaaactagatgtgcgcaattgcagttagggaat
ttcccaatggATATtatgaatatcaccacaaacgatTGTTACACGTTCAG
CCTCTGGCTGTTCAAGCCGGGtcaaaattttatccggacaatcaaatcaa
cggcgcatcatggcttcgctattggcaagtttagaaaaaaaTAAATTTAT
AAGAACTTGAAAATATTCACTTCTAAATGTTTATCTCCTTTAGCTCCAAT
TTTGAACTTGTTAGTCGAGGATGAGTGGGTGGGGGGTGGGGATGGTtttt
taggcaagaaagtgcatgtgtaatcatttagaagagctaaacttccagct
ggtttatttatttgttaagattatttttcatactcgctctgcaatagaat
tatttctttgctttctgatctgttctgattagtagtttgcgggcaacgtt
ctaacacaactaactcaacaagctcatctttcacatcttttaatctctta
agcgggagcttccagcgcagctggtttattatatGAGCAAAATAGTGCAT
GACatcaaaaatttcacaaaacagGGGTTTACTTTTGATTAGCATTGACA
GCTAAAATACAGCCAAATATTTGAGAGGGCCTGATATGTTTTGGGGGGGC
TGGAATTTCAATGGTAAGGCTGGGGGCTGACTATTTCttctaattatttt
tctttatatcacTACATTTTTTATCCAAAAACCTTTCATTTTACAGTCTG
TTGATTCTGTTTGTTTTCCCTTGTCTATTATCTTGAATTAACCATGTAGT
AATATAACCAATATATTTTATGTTGGAAATATCTCTAATTGCCTCTATTT
CTCCTCCAAAGCCACTCCAAAAACCGTTAAAATTTTGAGAATGAcaaaag
aaatagaaatgtgattttcctaaaaacaatattaaatcaacaaatatttt
atactAGGTTTAGGACTGGGGGCtgcttaaaaaaacttttgaaaaaaact
gacttttttccatgtcaaaatttcaaaaaatcatcaatcgGGGGTTAACC
CGTTATCGGAAGTCATTTCCGGGTTTAAATCccaatttggctttgaaaac
aGAAGCTGATATCATGTGAGGGGCAGGAACTTGTTGAACAAAAATGGGTT
ATCAAATCGATCGAACCACAATTCAATAATCAAACTTGATCAAACACTCA
CAATTCTTTGAAACATCTGATTCcataatcgaactttaatcgtttgaTGG
AGTACTGTAGTTCGATTGTTCCATTGTTTCGAAAAGTTTGATTGATCAAG
TCTGTATATGGCGCAGTATTCGGCATACTGTGCACCATTTCCACTATggt
ctactgattgcttcccgaCCCTCCTTTGCagactgtttatcaaatttcca
ccaatgagattgccaCATTTCatacggcccttctttttggtgtttatggc
ctctcagtgccttacACGACGGGCAGCTCCAGAATCCGcctcttttattt
gtttcaatccgtgatcctaagGCGTAAGCTTGTTCTAATCTTCAAACTTC
TGAAGAAAGCGTGATTTTGATGTGAAaattagattgtcaacaaagtgctg
taaaaaaatcattgaataaaagaagaactttaaaaatcttaaatattttc
attttgaagagtttgtgcaaaaaagtgaaacattgaaaagtttcaatttt
tatttgtttaatcAAAATTTACTATGTCTGGCTTTTTtacacaaacccct
gtaactatggacgagcaccctgttgctattttactgaagattgccatcct
gTATGGCATGAAATTATGAGTATGAAATTATAACTTTACTCATTCCCTGA
ATTAAAGTGGACAAGGCAAGCCTGCAAAGAAAAGAGTTTCAATCAATAAT
TCGATTTTAGATGTCTATCCTTATAGGTCTTACTGGAAAAAAGcagcatt
ttttatttgaattttctttattttcaggtGATTGCATTTGATGACTTGCG
CACAGACTACAAAAATCCAATAGACTTATGTAATTCTTTAAACCCGGTAG
GTatcaatcaaaaaaagattattaatCTTTTCCTTCAAATGATAAAAGAT
CATACTATTTTCGGCctttttttaagtttcaaaaTTATTGTTACAGCATT
AACTTTCACCTGGACTAGATTGTGCGAATTGAGAATATGAAATTTTTGCT
CGGATTATATTTCGCAAATCATCCTCTTTTCCACCTGAAAACTCAAACAA
AatctccgataagatctattattTCTCATTCTTAGTTGGTGTTGCCAGAG
TATGGAATTCACGCCTTTCTTTGTGTCATGTTCTTGTTTGGTGGATTTTG
GGTCATGTTTTTGTTGAATCTTCCGTTATTGGCGTACCACGTACATAGGT
AAGTCTGCAAATCACTCTTTTATCCGGGGTTTAATTTTTATGACAGACAG
TCCCTCTACCGTAAATCAGTACTGACAGATTTCAAAAACAGTATTTCATT
GCATTTCGAGTTTTTCTTTATTCGAGTTTCGAAGCAGCAGATGAAAGTAT
TACTACTTTGAAGTAAATCATTTTCCATCATTGCTCCTGTTTCTAGATTG
AAAATAACAATCAATGAATCAGTTTTCTGCTTCTGCTATTTTCACCCTTT
CTcctcttttttggacctacctccgggtaccccggtggaggtcctatgaa
ttaaccgttgtccgtccgtccgtctgtccgtccgttcgttcgttcgttcg
tccgctcgtctgttaccagcttttctcgagattggctcattagttttttc
tgatttttagcacaaagatgcgtatttttaacaatgcccaaaacatggcc
aaaatttccggccgaaaatgccggagatcgccgtttttctgggttttcat
tggactttttccttataattggttgtttttccattcaaaaacattattat
tagcaatgcccaccatcaagcatgtttcaattttcaataaaattgatttt
tgaagccggaactatttataaatcgccggaacaacctattttcgccggaa
aggcAGTatctcttgaatttctcgagctgcactttatatttttttatgaa
attttgcacactgatgcaaaatgacaatacctaaaatgtgacggagcctg
attttcgaaaaacattttttccggccgaaaataccggaaatattccggaa
aaccggtttattgactttttctcgaattttcatcatcagtttttttgcag
aaagatgcgtattcgcaatgctcaaaacatggcagagttcgatttttgag
aaaaacatttttccggttgaagatgccggaaatcgccgtttttgcagatt
ttcattggatttttttccttatatttctatgtttttcacacaaaaacatt
aaacataacaatgctcaccatcaacattgatttttgcgaccagaactttc
tatttattttttccctacaacccttccctctccccctatcaacaatcaat
gatgaatttattgcgttatgcattttcgctaaacactatattttctgact
gatttttttcatttttctcctcgtcctcgcattgctatctaactttcatc
atcaggtaggtctatTCGGCATTTAGCTTGTTACACAAAGAGGTAATTAT
TTTCTCTTATCTTTTCTCTCGTTCTCTTAGGTACATGACGAGACCAGTGA
TGAGTAACGTGGGTGTTTATGATCCTACTCAAGTCATGAATTCATCCGAA
TTGAATCGTTGTCAACGCGAGGGATGGGTCAAATTGGCCTTTTTCCTCAT
CTCCTTCTTCATCTATTTGTACCGGTATGTTCTTCACCCTGTTTTTTCGC
CTTGTGTTCATCAtcactgttttgttttgtttcttaaGTTTCCTTCAATG
CACgggttaaattgttttttgatttattcttactttttagAGACTTGACT
TTCAGACAAACacgagaaatgatcaatttgattaaaattacatttctgcc
tcGAGGGTATTTTTAGGGTATTCtaacgatttggccaatttttaccctga
tattcttaaagaagatattcttaaaaaaaagtgtgtagaGCATAATTTTA
TGGACCCACTAACTTTACTGAACAATGAGATCTATAAACTAATCAACCAA
TCTAATTTTCGACAAACCCGTGCACCTATTATAGGCCATGAACAAATAGA
CCATGGAACACATGTAATTTGCTACACTCGAAAATAGtattagtctagca
agctagacgactaattcatacatagtagaaataaagcaaaaagtaataaa
gggaacaattttagtcgtctagaaacctttgtgcactaattccaaacaaa
agaaaagtgtcaatatttgcaattataattttttcctgctcaaaataatt
cttgagaaaaaagaatatgtgtggacttgtgtattgaaagtttttcattt
gagttgattttgttttgagagtttgttattgcttgataaattgttttttc
gctacgcaagtttctgcgtagctagcggggtatctataaggctggaacac
cggattcatCCAGtggtttatacaaactaaattctgtattattattatta
gtattacacgcattataaacgactccagtgggaaatttgttcgttttttt
aaggtcgctcgatttttttagtcaaagcatttgttatacattttcggaaa
gctaaggggtagggaatcaaaataacttgggtgccaattttttttcggac
actttggtgtgattttcggacaaatacgacggtctcaagcaaaaatcata
gggtgaaaaattaatgaaaattttggcTTGAGAATATGAGTATATaagta
tatttttggaaaggtctcaaaaaattaagattagtgatatattgcgagta
taggtgatttctttacctaactcgagatattaatccttaaaaacgtgttt
ttcagtgtttttcagccagaaacagctgttttgtccagtttttgcgcttt
cggaagctcaatatcttgagttatgtactgaaatcacctatactcgcaat
atgtcattaatcttaattttttgagagctttccaaaaatatacaacaggt
ctccgttttctcaagctaaaattttcattaatttttcaccctatgctttg
actaaaaaattcgagcgattttacaaatttccccctactaaatgtcaaaa
agttgatttgacgttcaaatgtcaaaagtttcttttgatattcaatgaaa
agaaaaaaataatcgtCTAATTTTACGCTAAACCAGCTTGAAGAAcgaga
aaattgattttctgcATAATATGTCTGAGCATATTGGAAGTTTTTATCTA
AATGGcaataaggcgagaccaatttgattagttgtttatTCAGAAAATCC
GAAAatcgaaatgaaaataaaattgattttggtaataaatttttattttc
attgctttacagactgccaaattttcaaaattttgttgtttttccaaggt
tttgagaattttatgttcaatttttcattttatccatgaattcgaccttt
ttatgtctttttattttctattttacatttttgccaagatgtagtagttt
ttgctgcattttttaggagattttataggtttaattctacttttattttt
atttttttgccgGCCGTCCGACCGAActtcttttttgggtagcttggccc
gtaaaacaacaaattaaattggcctcgcctaagAGATTTCATTTAAAGCA
AGCGAACTTTTCTGCTTCTTttacatttgatattttactttttcagtTTA
CTTTTTTGTTCTATTTTCCACTTGCAGGGATGAGAATGTTACAATACTTT
TTCATCAATAGTCTGATGGTATCCTTCTTCCATCTTTTTCCTTCACTGAT
actgtgtttacaatgaaaagttaatgctttgttttatttttagcaTGTTA
TATGCTCTACTTTCGTAACGGATTCTCGTATGCTGCAAAACCAGTTCCAT
CGAAACATGAAGAAAACATTTCGACCAACGTGACAGTCAACTAATACTTA
TATTTATGAAGAGGATTCAGACTTTCTCACCTCCAGGTTACCTAAGGGAG
GTCAACCATGTAATAATATTAGTTAGGTTTATTGTgtaatattgaatttt
tttattgtttagttTTTCCtctatttccttttttttcctaaataaaattt
cttcttgtCAAAGACAGcgaatttttaacaaaaatattttgatgttgaCA
TTTTTGATCAAGTTAGGTCCCCCCCCTACCTCAAATGAGATCATAATAGC
GGCTTGAAATTTATGGACAACAATGACTAAATACTTTTAATACAATTTAT
TCAAACTTGATGGACGTATAAAAACTTAGTGCTTGCTGGTTGGCTCATAT
AATTTACAGCAATttaaaaaggc

Coding sequence (CDS) from alignment at sc0000436:8978..25450+

>TCONS_00022892 ID=TCONS_00022892|Name=TCONS_00022892|organism=Clytia hemisphaerica|type=CDS|length=2130bp|location=Sequence derived from alignment at sc0000436:8978..25450+ (Clytia hemisphaerica)
ATGTCTTTTGAAGTCCTTTGCTTCATCCTAGCTCTTCTCATTTCAATTGG
TCTAATTTTCATGGTGATATGGAACgtGATTGCATTTGATGACTTGCGCA
CAGACTACAAAAATCCAATAGACTTATGTAATTCTTTAAACCCGTTGGTG
TTGCCAGAGTATGGAATTCACGCCTTTCTTTGTGTCATGTTCTTGTTTGG
TGGATTTTGGGTCATGTTTTTGTTGAATCTTCCGTTATTGGCGTACCACG
TACATAGGTACATGACGAGACCAGTGATGAGTAACGTGGGTGTTTATGAT
CCTACTCAAGTCATGAATTCATCCGAATTGAATCGTTGTCAACGCGAGGG
ATGGGTCAAATTGGCCTTTTTCCTCATCTCCTTCTTCATCTATTTGTACC
GcaTGTTATATGCTCTACTTTCGTAAATGTCTTTTGAAGTCCTTTGCTTC
ATCCTAGCTCTTCTCATTTCAATTGGTCTAATTTTCATGGTGATATGGAA
CgtGATTGCATTTGATGACTTGCGCACAGACTACAAAAATCCAATAGACT
TATGTAATTCTTTAAACCCGTTGGTGTTGCCAGAGTATGGAATTCACGCC
TTTCTTTGTGTCATGTTCTTGTTTGGTGGATTTTGGGTCATGTTTTTGTT
GAATCTTCCGTTATTGGCGTACCACGTACATAGGTACATGACGAGACCAG
TGATGAGTAACGTGGGTGTTTATGATCCTACTCAAGTCATGAATTCATCC
GAATTGAATCGTTGTCAACGCGAGGGATGGGTCAAATTGGCCTTTTTCCT
CATCTCCTTCTTCATCTATTTGTACCGcaTGTTATATGCTCTACTTTCGT
AAATGTCTTTTGAAGTCCTTTGCTTCATCCTAGCTCTTCTCATTTCAATT
GGTCTAATTTTCATGGTGATATGGAACgtGATTGCATTTGATGACTTGCG
CACAGACTACAAAAATCCAATAGACTTATGTAATTCTTTAAACCCGTTGG
TGTTGCCAGAGTATGGAATTCACGCCTTTCTTTGTGTCATGTTCTTGTTT
GGTGGATTTTGGGTCATGTTTTTGTTGAATCTTCCGTTATTGGCGTACCA
CGTACATAGGTACATGACGAGACCAGTGATGAGTAACGTGGGTGTTTATG
ATCCTACTCAAGTCATGAATTCATCCGAATTGAATCGTTGTCAACGCGAG
GGATGGGTCAAATTGGCCTTTTTCCTCATCTCCTTCTTCATCTATTTGTA
CCGcaTGTTATATGCTCTACTTTCGTAAATGTCTTTTGAAGTCCTTTGCT
TCATCCTAGCTCTTCTCATTTCAATTGGTCTAATTTTCATGGTGATATGG
AACgtGATTGCATTTGATGACTTGCGCACAGACTACAAAAATCCAATAGA
CTTATGTAATTCTTTAAACCCGTTGGTGTTGCCAGAGTATGGAATTCACG
CCTTTCTTTGTGTCATGTTCTTGTTTGGTGGATTTTGGGTCATGTTTTTG
TTGAATCTTCCGTTATTGGCGTACCACGTACATAGGTACATGACGAGACC
AGTGATGAGTAACGTGGGTGTTTATGATCCTACTCAAGTCATGAATTCAT
CCGAATTGAATCGTTGTCAACGCGAGGGATGGGTCAAATTGGCCTTTTTC
CTCATCTCCTTCTTCATCTATTTGTACCGcaTGTTATATGCTCTACTTTC
GTAAATGTCTTTTGAAGTCCTTTGCTTCATCCTAGCTCTTCTCATTTCAA
TTGGTCTAATTTTCATGGTGATATGGAACgtGATTGCATTTGATGACTTG
CGCACAGACTACAAAAATCCAATAGACTTATGTAATTCTTTAAACCCGTT
GGTGTTGCCAGAGTATGGAATTCACGCCTTTCTTTGTGTCATGTTCTTGT
TTGGTGGATTTTGGGTCATGTTTTTGTTGAATCTTCCGTTATTGGCGTAC
CACGTACATAGGTACATGACGAGACCAGTGATGAGTAACGTGGGTGTTTA
TGATCCTACTCAAGTCATGAATTCATCCGAATTGAATCGTTGTCAACGCG
AGGGATGGGTCAAATTGGCCTTTTTCCTCATCTCCTTCTTCATCTATTTG
TACCGcaTGTTATATGCTCTACTTTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012870XLOC_012870Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022892-exon-sc0000436-1491911889:8978..9160TCONS_00022892-exon-sc0000436-1491911889:8978..9160Clytia hemisphaericaexon
TCONS_00022892-exon-sc0000436-1510915933:8978..9160TCONS_00022892-exon-sc0000436-1510915933:8978..9160Clytia hemisphaericaexon
TCONS_00022892-exon-sc0000436-1575043694:8978..9160TCONS_00022892-exon-sc0000436-1575043694:8978..9160Clytia hemisphaericaexon
TCONS_00022892-exon-sc0000436-1491911889:21005..21073TCONS_00022892-exon-sc0000436-1491911889:21005..21073Clytia hemisphaericaexon
TCONS_00022892-exon-sc0000436-1510915933:21005..21073TCONS_00022892-exon-sc0000436-1510915933:21005..21073Clytia hemisphaericaexon
TCONS_00022892-exon-sc0000436-1575043694:21005..21073TCONS_00022892-exon-sc0000436-1575043694:21005..21073Clytia hemisphaericaexon
TCONS_00022892-exon-sc0000436-1491911889:21313..21425TCONS_00022892-exon-sc0000436-1491911889:21313..21425Clytia hemisphaericaexon
TCONS_00022892-exon-sc0000436-1510915933:21313..21425TCONS_00022892-exon-sc0000436-1510915933:21313..21425Clytia hemisphaericaexon
TCONS_00022892-exon-sc0000436-1575043694:21313..21425TCONS_00022892-exon-sc0000436-1575043694:21313..21425Clytia hemisphaericaexon
TCONS_00022892-exon-sc0000436-1491911889:22708..22851TCONS_00022892-exon-sc0000436-1491911889:22708..22851Clytia hemisphaericaexon
TCONS_00022892-exon-sc0000436-1510915933:22708..22851TCONS_00022892-exon-sc0000436-1510915933:22708..22851Clytia hemisphaericaexon
TCONS_00022892-exon-sc0000436-1575043694:22708..22851TCONS_00022892-exon-sc0000436-1575043694:22708..22851Clytia hemisphaericaexon
TCONS_00022892-exon-sc0000436-1491911889:24971..25450TCONS_00022892-exon-sc0000436-1491911889:24971..25450Clytia hemisphaericaexon
TCONS_00022892-exon-sc0000436-1510915933:24971..25450TCONS_00022892-exon-sc0000436-1510915933:24971..25450Clytia hemisphaericaexon
TCONS_00022892-exon-sc0000436-1575043694:24971..25450TCONS_00022892-exon-sc0000436-1575043694:24971..25450Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022892-proteinTCONS_00022892-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000436supercontigsc0000436:8978..25450 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
245.752	244.747	323.778	357.779	48.3958	40.0848	67.7751	72.4285	87.0062	80.4249	61.7494	68.9149	34.0617	35.876	46.5153	48.255	74.1627	74.9994	14.2635	22.0091	56.6861	53.54	104.042	93.4988	40.6791	42.2761	57.628	47.125	66.235	57.8646
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003377Cornichon
IPR033466Cornichon_conserved
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00022892 vs. Swiss-Prot (Human)
Match: CNIH1 (Protein cornichon homolog 1 OS=Homo sapiens GN=CNIH1 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.032e-56
Identity = 88/143 (61.54%), Postives = 112/143 (78.32%), Query Frame = 1 
Query:  103 LKMSFEVLCFILALLISIGLIFMVIWNVIAFDDLRTDYKNPIDLCNSLNPLVLPEYGIHAFLCVMFLFGGFWVMFLLNLPLLAYHVHRYMTRPVMSNVGVYDPTQVMNSSELNRCQREGWVKLAFFLISFFIYLYRMLYALLS 531
            +  +F   C++LALL++  LIF  IW++IAFD+L+TDYKNPID CN+LNPLVLPEY IHAF CVMFL    W+   LN+PLLAYH+ RYM+RPVMS  G+YDPT +MN+  L  CQ+EGW KLAF+L++FF YLY M+Y L+S
Sbjct:    1 MAFTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLAFFYYLYGMIYVLVS 143
The following BLAST results are available for this feature:
BLAST of TCONS_00022892 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNIH12.032e-5661.54Protein cornichon homolog 1 OS=Homo sapiens GN=CNI... [more]
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