TCONS_00022892-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022892-protein
Unique NameTCONS_00022892-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length141

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022892-protein ID=TCONS_00022892-protein|Name=TCONS_00022892-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MSFEVLCFILALLISIGLIFMVIWNVIAFDDLRTDYKNPIDLCNSLNPLV
LPEYGIHAFLCVMFLFGGFWVMFLLNLPLLAYHVHRYMTRPVMSNVGVYD
PTQVMNSSELNRCQREGWVKLAFFLISFFIYLYRMLYALLS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012870XLOC_012870Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022892TCONS_00022892Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003377Cornichon
IPR033466Cornichon_conserved
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003377CornichonSMARTSM01398Cornichon_2coord: 5..133
e-value: 3.3E-69
score: 245.9
IPR003377CornichonPFAMPF03311Cornichoncoord: 6..133
e-value: 3.6E-48
score: 162.8
IPR033466Cornichon, conserved sitePROSITEPS01340CORNICHONcoord: 27..41

Blast
[Close]
BLAST of TCONS_00022892-protein vs. Swiss-Prot (Human)
Match: CNIH1 (Protein cornichon homolog 1 OS=Homo sapiens GN=CNIH1 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.337e-60
Identity = 88/140 (62.86%), Postives = 111/140 (79.29%), Query Frame = 0 
Query:    2 SFEVLCFILALLISIGLIFMVIWNVIAFDDLRTDYKNPIDLCNSLNPLVLPEYGIHAFLCVMFLFGGFWVMFLLNLPLLAYHVHRYMTRPVMSNVGVYDPTQVMNSSELNRCQREGWVKLAFFLISFFIYLYRMLYALLS 141
            +F   C++LALL++  LIF  IW++IAFD+L+TDYKNPID CN+LNPLVLPEY IHAF CVMFL    W+   LN+PLLAYH+ RYM+RPVMS  G+YDPT +MN+  L  CQ+EGW KLAF+L++FF YLY M+Y L+S
Sbjct:    4 TFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPTTIMNADILAYCQKEGWCKLAFYLLAFFYYLYGMIYVLVS 143
The following BLAST results are available for this feature:
BLAST of TCONS_00022892-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNIH12.337e-6062.86Protein cornichon homolog 1 OS=Homo sapiens GN=CNI... [more]
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