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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022880 ID=TCONS_00022880|Name=TCONS_00022880|organism=Clytia hemisphaerica|type=transcript|length=1899bp
aaatttcacctacaatCTCAGGGTCAGCTGCTGTAAATAACATCTGCTGC
AACATCTTTGTCAGGTTTCCTAGCTATGCATTTTTTCTCCAAGGTTGCAG
ACCTGCTTCAGAGTCCAGTAAGCATGCACCAGTTCACAAATGATAACACA
CAGTATTTTCCAATAAGCTTTATGCTTACACCCGAGTGTCACTGACCCTC
TTACCCATAGCAAAGTTAAATCTGGTATTCAACAAACAgtgaaatcttta
aattttaatttcaaaatttaaataaacCATATAATTGGGCATAATTCCGA
TATTTCATATCATTCTATCATtacatgaaataaaaaaaaagcatatcaaa
aataaatctagaACATccgaaaaaaaagcaaaatgacCATTTGAAATGCT
GTAGTATATGCTTAATTAAATATGAAGTATTAATTTTATCTAATATCGAT
AATTATTTACCGTATGTGCGTGGTAACGTgcttaaaatacaaaaaattaa
acGGAAAAACGAACAAGTTGAACGGACGAATCAATCCACACCTTGTAAAA
TCTTCAGCACTGAAAGAGCCATCGCTGACGTACGCTACTATATGCATTCA
GGCCATCATATCGTACACTAAtttttataacaattttcaaatattctttG
ATGCGCATACACCCCATCAACAAAAAAACCTCGACTATTTCATTCGAGCA
AGGGTAAAAGAACAGCAGACATGAGTCGAGTCGCTGCGCTCCTGGGTCTC
ATGTGATGAAATTAATGgttttaaaataagaaaatagtACCAAAGAATAA
GAACAGCCGATCCTCAAAAAAGTATGTATTTAGTATCGTCGAAGTGTATT
TTTGCGTTCGACTTCTCTACAATCAGGGCATTTTCCATTGATCATACATT
GACTTGTCAGCATTCTTTTACAACCAAGACATTTTGATTCCTCGGAAGGG
AAAGGCTGAAGAATACCACCAACTTCttctggaaaaatataacaaatcaT
TATGGGGTTTCGAACGTAGGACTTGTCAAATTTTTCGCAGCTTCTTCGTG
CATTGACGTACCTATCAGAAGCTATTTGAAGCTTTTCCAATGAGTGTCCT
GTTAGAGGCTTGTATCTTAGTAAGGCCTTCTTAACAATATTGATCATGAC
AACGTCCAAAGCTGCATAACGGACAAATCCTTCGGTCAATGGTCTGTACC
GCCATACAGTTGTATCATTCTTCATGAGGGTAATCGCTTCACATCCAATA
TACCCATGCTTGATTTATCATTAGATCGGACATATTTATCGACAGTAGCA
TCTAGCCCAAAAACTACTGGTCTTCGCCAATGCCAGGGTTTAGCAGGTGT
TGGCAATTGATAACCAGCTACTTCGCGTACCATGTATTCAAAGAGCTGCA
TATCCAATACGTTGGTCAATCTAACACCAAATTCTTGCCATAAAGTATCA
GAATCACGCCTGCAATCAAACATCAATTTTACCACTTCTGTAGACTCAAG
TATCTCCTTTAATCCATATGCGAAAGCATTGTTGCCAAGGACCAATACAT
CGATTAAGAAGATAGTATCTTCATCTGCCATCAGTTGAATCAAAGTTAAC
TTTCCATCTCTTCCAAGTTCAACTCCTTCACAATCAACAGCCAGCTCCTT
TGAACGTCTTAAACCATCACAAACAACTCTTAAAACGtctaattTATCAA
CAAATATGACGGATGGTGTGAAACCTTCACAGGCACGCTCTAGCTCTTTC
ATACCAAAGCGGTGTCGATTCTCAAGTACAGAAGTCTCCCTTTGTAGGAA
GGCAGGATTGTTTAGCCACGACATTTCTCTGTAACTTGAACTTTGAAAGA
GCTTTCACTTATCAAGTCTTAGACGACGAGATTCACACATAAACTTGCG Run BLAST on NCBI protein sequence of TCONS_00022880-protein >TCONS_00022880-protein ID=TCONS_00022880-protein|Name=TCONS_00022880-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MSWLNNPAFLQRETSVLENRHRFGMKELERACEGFTPSVIFVDKLDVLRV
VCDGLRRSKELAVDCEGVELGRDGKLTLIQLMADEDTIFLIDVLVLGNNA
FAYGLKEILESTEVVKLMFDCRRDSDTLWQEFGVRLTNVLDMQLFEYMVR
EVAGYQLPTPAKPWHWRRPVVFGLDATVDKYVRSNDKSSMGILDVKRLPS Run BLAST on NCBI transcript from alignment at sc0000435:40407..42305 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022880 ID=TCONS_00022880|Name=TCONS_00022880|organism=Clytia hemisphaerica|type=transcript|length=1899bp|location=Sequence derived from alignment at sc0000435:40407..42305 (Clytia hemisphaerica)
CGCAAGTTTATGTGTGAATCTCGTCGTCTAAGACTTGATAAGTGAAAGCT
CTTTCAAAGTTCAAGTTACAGAGAAATGTCGTGGCTAAACAATCCTGCCT
TCCTACAAAGGGAGACTTCTGTACTTGAGAATCGACACCGCTTTGGTATG
AAAGAGCTAGAGCGTGCCTGTGAAGGTTTCACACCATCCGTCATATTTGT
TGATAaattagaCGTTTTAAGAGTTGTTTGTGATGGTTTAAGACGTTCAA
AGGAGCTGGCTGTTGATTGTGAAGGAGTTGAACTTGGAAGAGATGGAAAG
TTAACTTTGATTCAACTGATGGCAGATGAAGATACTATCTTCTTAATCGA
TGTATTGGTCCTTGGCAACAATGCTTTCGCATATGGATTAAAGGAGATAC
TTGAGTCTACAGAAGTGGTAAAATTGATGTTTGATTGCAGGCGTGATTCT
GATACTTTATGGCAAGAATTTGGTGTTAGATTGACCAACGTATTGGATAT
GCAGCTCTTTGAATACATGGTACGCGAAGTAGCTGGTTATCAATTGCCAA
CACCTGCTAAACCCTGGCATTGGCGAAGACCAGTAGTTTTTGGGCTAGAT
GCTACTGTCGATAAATATGTCCGATCTAATGATAAATCAAGCATGGGTAT
ATTGGATGTGAAGCGATTACCCTCATGAAGAATGATACAACTGTATGGCG
GTACAGACCATTGACCGAAGGATTTGTCCGTTATGCAGCTTTGGACGTTG
TCATGATCAATATTGTTAAGAAGGCCTTACTAAGATACAAGCCTCTAACA
GGACACTCATTGGAAAAGCTTCAAATAGCTTCTGATAGGTACGTCAATGC
ACGAAGAAGCTGCGAAAAATTTGACAAGTCCTACGTTCGAAACCCCATAA
tgatttgttatatttttccagaaGAAGTTGGTGGTATTCTTCAGCCTTTC
CCTTCCGAGGAATCAAAATGTCTTGGTTGTAAAAGAATGCTGACAAGTCA
ATGTATGATCAATGGAAAATGCCCTGATTGTAGAGAAGTCGAACGCAAAA
ATACACTTCGACGATACTAAATACATACTTTTTTGAGGATCGGCTGTTCT
TATTCTTTGGTactattttcttattttaaaacCATTAATTTCATCACATG
AGACCCAGGAGCGCAGCGACTCGACTCATGTCTGCTGTTCTTTTACCCTT
GCTCGAATGAAATAGTCGAGGTTTTTTTGTTGATGGGGTGTATGCGCATC
aaagaatatttgaaaattgttataaaaaTTAGTGTACGATATGATGGCCT
GAATGCATATAGTAGCGTACGTCAGCGATGGCTCTTTCAGTGCTGAAGAT
TTTACAAGGTGTGGATTGATTCGTCCGTTCAACTTGTTCGTTTTTCCgtt
taattttttgtattttaagcACGTTACCACGCACATACGGTAAATAATTA
TCGATATTAGATAAAATTAATACTTCATATTTAATTAAGCATATACTACA
GCATTTCAAATGgtcattttgcttttttttcggATGTtctagatttattt
ttgatatgctttttttttatttcatgtaATGATAGAATGATATGAAATAT
CGGAATTATGCCCAATTATATGgtttatttaaattttgaaattaaaattt
aaagatttcacTGTTTGTTGAATACCAGATTTAACTTTGCTATGGGTAAG
AGGGTCAGTGACACTCGGGTGTAAGCATAAAGCTTATTGGAAAATACTGT
GTGTTATCATTTGTGAACTGGTGCATGCTTACTGGACTCTGAAGCAGGTC
TGCAACCTTGGAGAAAAAATGCATAGCTAGGAAACCTGACAAAGATGTTG
CAGCAGATGTTATTTACAGCAGCTGACCCTGAGattgtaggtgaaattt Coding sequence (CDS) from alignment at sc0000435:40407..42305 >TCONS_00022880 ID=TCONS_00022880|Name=TCONS_00022880|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at sc0000435:40407..42305 (Clytia hemisphaerica)
ATGTCGTGGCTAAACAATCCTGCCTTCCTACAAAGGGAGACTTCTGTACT
TGAGAATCGACACCGCTTTGGTATGAAAGAGCTAGAGCGTGCCTGTGAAG
GTTTCACACCATCCGTCATATTTGTTGATAaattagaCGTTTTAAGAGTT
GTTTGTGATGGTTTAAGACGTTCAAAGGAGCTGGCTGTTGATTGTGAAGG
AGTTGAACTTGGAAGAGATGGAAAGTTAACTTTGATTCAACTGATGGCAG
ATGAAGATACTATCTTCTTAATCGATGTATTGGTCCTTGGCAACAATGCT
TTCGCATATGGATTAAAGGAGATACTTGAGTCTACAGAAGTGGTAAAATT
GATGTTTGATTGCAGGCGTGATTCTGATACTTTATGGCAAGAATTTGGTG
TTAGATTGACCAACGTATTGGATATGCAGCTCTTTGAATACATGGTACGC
GAAGTAGCTGGTTATCAATTGCCAACACCTGCTAAACCCTGGCATTGGCG
AAGACCAGTAGTTTTTGGGCTAGATGCTACTGTCGATAAATATGTCCGAT
CTAATGATAAATCAAGCATGGGTATATTGGATGTGAAGCGATTACCCTCA
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022880-exon-sc0000435-1491911889:40407..42305 | TCONS_00022880-exon-sc0000435-1491911889:40407..42305 | Clytia hemisphaerica | exon |
| TCONS_00022880-exon-sc0000435-1510915933:40407..42305 | TCONS_00022880-exon-sc0000435-1510915933:40407..42305 | Clytia hemisphaerica | exon |
| TCONS_00022880-exon-sc0000435-1575043694:40407..42305 | TCONS_00022880-exon-sc0000435-1575043694:40407..42305 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000435 | supercontig | sc0000435:40407..42305 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002562 | 3'-5'_exonuclease_dom |
| IPR012337 | RNaseH-like_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006139 | nucleobase-containing compound metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008408 | 3'-5' exonuclease activity |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006139 |
nucleobase-containing compound metabolic process |
| molecular_function |
GO:0008408 |
3'-5' exonuclease activity |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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