TCONS_00022866 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022866
Unique NameTCONS_00022866
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1245

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022866 ID=TCONS_00022866|Name=TCONS_00022866|organism=Clytia hemisphaerica|type=transcript|length=1245bp
GAAAGTACTCAAAATGGAATGGAATATGCTTCCTGCAGGTGTTGTGAAAA
AGATATTGAGTGGTGGCAAAGGTGAGCTGGCTTCTTTTCCAGATGGATCA
AAGGTTTGGTTCCATTTTAGAACATTTGTGATAAAAGAGGGTGATGAAAG
GCAACTTTTGGATGACAGCAGAGTTCAGAGTGATGCATTTGAGCTTTTGA
TTGGAAAACAATTTAAGTTGGATGTATGGGAGAAGTTGATTAAAACAATG
CGAATCAATGAAGTTGCTGAATTCATTTGCCAGCCAGCTTTGGTTGGAAG
TTACCCTATCGTCTCTAAAAGCCTAAGAGGTATTTGGTCCAAAGATAAAG
ATAAAACTGAACACAAACACCAGTGTGGATTCGCAGCTCTTTCTGAAGGA
TTGGGCTACAGTGACTTAGATGAGTACGTAAAGAATCCTTCTCCACTTGC
CTTTCAAATTGAGCTTGTCAAACTTGAATTGCCAGGAGAATACGAGCAAG
ATCTCTGGTCAATTTCTATAGATGAGAAAGCTAAACTCATTCCCAAATGG
AAAGAGGAAGGTAATCAGTTGTATAAAGATGGTAAGTTTGATGCAGCAAG
TAAGAAATATTCAGGGGCGTTAGGATGTTTAGAGCAGTTGTCAACAAGGG
AAAAGCCAGGGAGTAATGAATGGCAAGAAATTGAACAacagaaaattcct
tttttgttgaatttctctCAATGCATGTTGAAGACAAAAGAATACTATAA
AGCTATTGAACATTTAACCACTGTATTAGAAAAAGACTCAAAGAATGTCA
AAGCTTATTTCCGTCGTGCTTCTGCCTatcattttgtttttaactttcAT
AAAGCAAAACTTGACTACAAACAAGCAAAAGAACTGGACAAATCATTGAC
TAAAACTATTGACAAAGAGCTTGCACTAATTGACAAAGATGAAGCCCAGA
AAAATAAAGaggataaagaaaaatataagaatGCATTTGCAtgatatttt
atttaaatttatgTATAGTGATGAGGTAAATTTCTGTAAAGCACTAAATT
CAATTTAAGACttcgattttatattttatgatcATTATGCGATCTTCGAT
CCATTTGTTCTCAAACTTTTATCATAttcatcaatattttattagACTTC
ACTTATGTGGATTTTAACTTTAGGgatttaaattttattgaattatCAAC
TATGGTAATCTgactttttcaaagctctatattGCTCTGATAAGC
Run BLAST on NCBI

protein sequence of TCONS_00022866-protein

>TCONS_00022866-protein ID=TCONS_00022866-protein|Name=TCONS_00022866-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
KVLKMEWNMLPAGVVKKILSGGKGELASFPDGSKVWFHFRTFVIKEGDER
QLLDDSRVQSDAFELLIGKQFKLDVWEKLIKTMRINEVAEFICQPALVGS
YPIVSKSLRGIWSKDKDKTEHKHQCGFAALSEGLGYSDLDEYVKNPSPLA
FQIELVKLELPGEYEQDLWSISIDEKAKLIPKWKEEGNQLYKDGKFDAAS
KKYSGALGCLEQLSTREKPGSNEWQEIEQQKIPFLLNFSQCMLKTKEYYK
AIEHLTTVLEKDSKNVKAYFRRASAYHFVFNFHKAKLDYKQAKELDKSLT
KTIDKELALIDKDEAQKNKEDKEKYKNAFA
Run BLAST on NCBI

transcript from alignment at sc0000435:143583..154586-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022866 ID=TCONS_00022866|Name=TCONS_00022866|organism=Clytia hemisphaerica|type=transcript|length=11004bp|location=Sequence derived from alignment at sc0000435:143583..154586- (Clytia hemisphaerica)
GGTAAGAATATTTCTGCCTTTTCCTGGAGTTTTTGAAATATAACATAAAA
CTACCAGGCAATCCAATGTCAACAGAACAGACTGACAGGGTGATGTCATG
AACCAGATCTGGCCAGAGAGACGACCCCAGTCAGGACCTCATTTCACTTT
ATCGATATTACGCAAACGGCAGTGTGCGCTAAATAATCTTGGTTTCGCTT
TCGATTTCAAGCAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTAAGAGAATTTT
TTCTAGAAAGGGGGAAGTTTTTAGAAAGGGGGGGGTTCATCTAGAAAGGG
GGGGGTAAGATGTCAGTGGTATGTTTTTTTTTTGTGTTTTCCCAAATTAA
AAGTTTTATTTTTGATTTACAATGCAACGTCTTCTTTATTAATTGTTTAG
TATGTTTGAAACATTCGATTCAAAATGATTCTATTATTTTCGNTCACGCT
TTTAGCCTGAGACGTCCTATCTCATTTACACTGGGTGACAAATACCCCAT
GCAAATGCTCACCCCGTTCATTTGCCAGGATGTGCCTGACTGTAGGATCC
ATCATCGGAACGGCTCGATGACGGATCGATGTGATCGATGGATTACTTAA
TGATCCGGATAGGAGATCGATACTCAAGATTTTTTTAAGCTTTAAGCTTA
AGTTATCGATTATTTATCGATCTTTTATCGATCTTATCGACCCTATCGAC
TCATACTCGATTTACGATCAATAACAAATCGATTAACAACGATCGATGAC
GAATCGATTAACGATCGATGACGAATCGGTATACTCGATTGAAATACTAG
CTCGATAATGGATCAATGAAGGATCGATACTCAAGACTTTAATGGCTAAA
TCTTCCATCGATCTCCTATCCGGATCGTTAAGTAATCCATCGATCACATA
TCGATCCGTCATCAAGCCATTCCGATTATCGATCCTATCGAGCGCGGACG
TCTGGATATAATATGCAGGTGTAATATTCTACACTTTTGTCTAAAAATTC
GTTCCAACTAAAGTCTGTTCATGATAAGTGTGCACTCTTTTTTCTTTTAC
CTATAACTTTTGAAGGAATTCTTCAATCTTTTTAAATTTGATATTGTTGG
AAAGATATTTGTGAGTGGAACAGTTTGAAATAAAAAGGTCTTTTAAAAAA
TTCTAAAAACAAAGATGAAAATAAAGAAGAAAAAAATGAAGATCTTGTAG
AAAAGTGCTATAACTTTCATTTTCACTGGAGAGATTCTTTGATCTTAGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTT
GAGGGGGGTAGCATCAAATTTTAAAAGGGGGAAGAACCTAGGGTAGGGGG
GGTAGCTCTAGGGTAGGGGGGGTAGTGACCCCCTTCCGAACTATGGCGTA
CATAGAAACGGGGCTGGTTAGAAAAATCTAAACATAGTATAGACGACCCT
GGACACCGCCGTACATTGCGCGGTGGAGTCCGGTTAGGTTAGATCAAAAA
CACCGTACAAAATCCCACCGTACACAGAATTACCACCAATCGACTACTCA
CCGTGTATAATGTACGGGGCGGTATTTTTCTTGTACGGTGGGACATGTGC
GGTGGAGTAGTTCAGGGTCGTGGTCAGAGTGTAAGGTGTGATGGATAACC
TCTGTTAGCCATTCCGGGTTTGCTTGTTTTTTATTCAACGCTCATGAAAA
TCTTCAATTTTAGGTCCAACTTTGACAAGCAATTGTTCTTTTTTGTAGTT
GAGCTATAAAATTAATTATTTTTGAGTAATTTAGAGTTTTCTTTAAGCTT
TCCAACCATATATAATCCAGACGTCCGCGCTCGATAGGACAGTCAGGCAC
ATCCTGGCAAATGAACGGGGTATTTTTCACTTGCGACCATTGGCAAATGA
ACGGGGTCGAAAATGAAAGTGACGTAATAGTGCCGAATACCCAGTTTAAT
TGAACCGGNGAAGATCTTGTAGAAAAGTGCTATAACTTTCATTTTCACTG
GAGAGATTCTTTGATCTTAGGAGGTCATCACTGTGAAGAAATTTTACTAA
AATATTTATTCACTATAAAGTTATGATACCAAGTTTATAAGTGATTGACC
CCAAAAAACAGCAGAAAACAGCCTTTTTAGACGTCAATCAGCTTATAACT
TTGTTTGATATCTTTTGACTGAATGATTATTTTTGAAAAAAATCTTCACA
GTGATGACGTTCGATGATCAAGGATTAATTTCAGTGAAAATGATAGTTAT
AGCACTTTTCTACAAGATCTTCATTTTCATCTTTATTTTTAGAATTTTTT
TAAATATTTTTTTATTTAAAATTGTTCCACTCACTAATATCTTTCCGATG
ATACCAAATTTATAAAGATTGAAGAATCCCTTCAAAAGTTATAGGTAAAA
GAAAAAAGAGTGCACACTTATCGTGAATAGACTTTAATTCCATTTTTAGA
AAAATTAGATCTGTGGGAAACAAAAAAATTCACAACACTCATCTTTGATT
TCAAACAGCTGCGGAGGAAAAAAATGTGACTCCTCAAGCGATTTGGAGTA
CACAAAAGACCGATTGGCCCAAAGCAGGTAAAATACCGGTCTTAAAGCGG
CCGAAGTAAAATCTTTAGCGGCCCATTGTTCGTGAAGATCGGCCTCCAAG
CGGACAAGAGAATTTTTGAAAGGTCCCTTTGAGGCCGCTCTTTTAGCGGC
CCTTTTTGAGCAATAACGTCAATAACGTTTCACATATTAAAATCTTTCGA
TATGAGCCATATATGATTAAGATATGTTGAAAAGGTGTATCGATAGTAAA
ATTATCTATCTTGTATCGATAAGGAAGAGACGCTCATGAAAATTACAAAG
AAAGCGAGTTGATAAAACTAAGCATAAAAGACGCTCGTGAAAATTACGGA
GGAAGCAAGTTTATAAACTAAGCATAGCAGACTCTTTTAAACGCTACAAA
GAAATCAAATTAAGAAAACTAAGCATGAGAGATGCTTGTGAAAGCAATGT
AGAAAACAAGTTTTATATTTGTTGACTATTCTTGTTAAAACATACGAAGA
AAAACAAGTTTGTAAAAGTATGCATAAGAAACTCTAGTGAAATTTATGAA
TAAAACAACTATGCTTTTGTTACAAATAGATCGGCTCAATAAAAGTTCTG
GCTAAGAGATAGGGGTGTTCTGTTTCTTAAAAAGTCTGTTGACGTACTTG
TGCAACCTACAATGTCTTTAGACATTTTTGTTTGTAAAAATTCGGACACT
TAAAAACACTACAATGACTTCTAAGTTGTATCGATAAATTTTTATCGCTA
ATTTTCTATTGCTAATTTTGTTATCGTTTTCGATTAGTTTCTATCGCTAA
ACTTTCATGGATCATTTATTGTTAAACTTTTATAGATAAAGCTCCTTTCA
CTAATTTTCAATCGCTTATTTGGGATCATTAAATTCTTATCGATAAAAGT
CTATCGATAGGCCTATGTATCGATAGGTGAATCGATAATTTAATCGTATC
AATAAAGTGTTGAGAGTGAAAGTGATCCTTTTCCCATGGAATGTCAAATG
TCCACGAATTTCCACTTTGTCAAAAATTTCTATCATATCAAAAAAAAATC
CAAATGATTTAAAACTGCACAGTGGGTTTGACTGACAATTCCTGCATTAA
TAACACGCATGCGTAAGAAAATCTCAGTTTCCAATTTCACAACACACGGC
AACTCGTTTTCCAAGAAACGAACTCAATGTTTACATTTTCGAAAAATGAA
GTAAGAGTAAGTATATAAGTAAAGAAATCAATAGCGGCCATAGGGAAGAA
GCGTACCGGGCATTGGACTGCTCGGGTCCCTTTAGCGGCCTCAAAGCCTC
TTCTTTATGGCCGCTTTTCATGATCGGCCATGCATCGGCCTCTTTCGATA
TTTGAACAGCCTTAGCGGTAAAAAGACCGGTCCAATAGAGGCCAAAGAGG
AACGGTCATTAGACCGATCGGACTTTGGTGTACTCCAAATCGCTTGGGGA
GTCACAAATGTTCAGGTAGAAAAAAGGGTCAAAGTGAAACTTTCCATATT
TATCAGAAACTACCTGAGAAATTCAATGGTGCTAGGCTCTGAAATTAATT
CTTTCATTAAAGTTATTATTTTTTACTTTTCATATTTTGGTATATAAGCA
TTTTCAGCCTGAAAATGAGGACTAGAATTATAAGAGACTGGTACCACTGA
AAGTTATTTATATGCCATGGGGGGTTTTTCCTCTGCAGCGCTTTGATTTC
AAAGATAGGTAGGCTCAGCAATTTTAACTTCCGCTTTATAACGTTTTTAT
TGCTTTTTGCAATGCAATGTCTTCTTTTTCAAAAAAAATTTCTTTTCATT
TCTTCCTTGAAGTGTTAGCAAGCTATTACAAAAAGAGTTTGATAAAAGTA
TGCAGTCAAAATGAAGATATCTGGATTTTTCTTATTGAATTTTGAAATTG
GAGAACTATCAAAAAGTGTATATTTCGGTGCCATTTTATATGCCATTTCT
GGGCTAAATGGTCAACCTCAAATGTCTAAAAAGGTGCTATTTTAGCGGAA
CATAAATCTCAGTATCTCCAGAACCGCTTATCATTAGGAGGTGTATGACC
CCTCATTTTTGGACTTACCTCCGGGTACCCCGTGGAGGTCCTTTAAATTA
ACCCATGTCCGTTCGTTTGTCCGTCTGTTGCCAGCTTTTCTCACGGGATT
GGCTCATTAGTTTTTTCTGATTTTTTGCACAATGATGCAAAATGGCAATG
CCCAAAATGTGACGGAGCCCGATTTTCGGAAAAAAAATATTTCTGGTCAA
TAATGTCGGAAATATCCCAGAAAAACTGGTTTTTTGGCACTTTCTCGAGA
TTTTATTATTAGTTTTTTCAGATTTTTTGCTCAAAGATGCGTATTAACAA
TGCCCAAAACATGGCCGAGTCCGATTTTTGAGAAAATTTTTTTCCGGCCC
AAAATGCCAGAAATAAGCCAGAAATCGCCTTTTTTCTGGATTTTCATTGG
GCTTTTTCCTTATAATTGGTTGTTTTTTTTTCATTTAAAAACATTATCAA
TAGAAATGCCCACCATCAAGCATGTTTTAATTTTTAATAAAATTGATTTT
TGAAGCCAGAACTATTCAAAAATCGCCGGAACAACCTATTTTCGCTGAAA
AGACAGTATTTCTTGAATTTCTTCAGCTGTACTTTATATTTTTTATGAAA
TTTTGCACACTGATGCAAGATGACAATACTTAAAATGTGAAATGTGACAG
AGCCCGATTTTCGAAAAAACGTTTTTTTCCGGCCGAAAATGCCGGAAATG
TGCCGGTTTTTTGACATTTTCTCGAATTTTCATCCTTATTTTTCTCTGAT
TTTTTGCAGAATGATGCGAATTCGCAATGCTCAAAACATGACTGAGTTCG
ATTTTTGAGAAAATGCTTTTTACGACCAAAAAAGCCGGAAATTTCCATTT
TTGCATATTTTCATTGGATTTTTTTCGTTTAATGGCTTTGTTTTTTTTCA
AACAAAAACATCATTTATAAGAATGTTCACGATTAAGCATGGTTCAATTT
TCAATGAAACTGGTTTTGGGACAGGAACTTTCTAAAAATTGCCAGAACAG
CCGAGAATCGCCGAATAACATGAATTTCTCGAGTTGCTCTCGTATTATTC
TGCATTTTCATACTATTGTTCTAATTTTTCAATTGTCTTATTACGTCAAT
CTTCAGGTAGGTCCATTCAGACGCCTGATTGCAGAACAAACAACGTTGCA
GCTCGTTTTATTGCATCATCAATTTTAGTTTTTCCCTATCAATCAACACA
CCAATTTCGTCGTGTCAATTCAAGACAGCCTTAAGTCCATTTTTCCATTT
TGAGATAATTGACTTTAAAGGTTGGGATGTGTTGGCTACACATTTCATGT
CAATGCTTCATAGAAAATGAAATTTGCACTAAAATTTAGGACTTTAAGGC
TGTTTATGGTTGATATATTATGGAACATTCTAAATTCTTATTTTTTTTGA
ATTGCAAAATACACCTCTTTCCCATTAGAATTCTGTGAACTTAAGGCCAT
TTTTGGAAAACGTGCATGCTGAAATAGGGGGTTATGGTCTTAAGTCAATT
TTCGAAAAAATGGACTAGTAATAGTAAGATTGCATGAGTACGAACAGACT
TTTTAAGAAAACGAACACCCCTGTCTTTTAGCCACAACTTTTGTTGAGCT
GAATTTGCTTTCTTTGAAGCGTTTAAATGGGTCTCTCATGTTTAGTTTTC
ACGAGTGTCTCTTATGCTTAGTTTTATCAACTGGCTTTCTTTTTTACTTT
TACAAACGTCTCATGACCAATTGCATCGATATACAACCATATCATTTTTA
GCGATAGAATTTATTGATAGGATTTTTTAACAATAAAACTTTATCAAGAA
AGAACTTTCCAACAATATATTTCATAGAACTTTCTTATCAATACAAGCTA
GCCTATCAATGAAAAATCTGCAGTTATTGATAAAATAAATCAAGCTATGG
ATAATTTTACTATCAATACACCTTTCCAACTATAATTATACATATCTGCC
CCTTTCTGACAAAAGGAAGTAACCCACATTTTTATGAATTTTGACTTGTT
GACTGAAATGGCTTCTTTGGGTCAAAACTTAACTTTTTTGGCTTAGAAAA
AAATTTTTTGAGTTGCCAATCTGGAAAAAAAATTTTGAATAAAGAAGTAA
CTGACAGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAAAAAATTTTTGA
ATAAAGAAGTAACTGACAGTTTTCTGGAGAATGTTTTCTGACAAAAAGAA
GTAAATGACTGTTTTGCTTCTTTTTGTCAGAAAAGGTATCACTTACTTCT
TTTTGTCAGAAATATTCTTCAAAAAAGTGGTCAGTTACTTCTTTCTTCAA
TTTCTTTTGGTTGAGGTTTACTGACAAAACAAGGGTCTTGTTTTTCTCTG
CAACAGTGAACATTGCGAGAAAAGCAGTGATGCTCAAAACTAATCTTCAA
TGAGTAGAACAATAATCAGTCATTTGTTTTTTGATATGTACTATCTGCAT
TCGATGCCAGCATAAAACGTGTTTGGTCTATTTTCTCAATTTTGACTTCA
TGTGGGTTACTTCTTTTTGTCAGAAAGGGGCAGATATATGGCTCATAACG
AAAGATTTTAAAATGCCAAACCTTTATTAATGTCTCCTCAATTCTGTTTT
TTAAGATTGTACTTTTGAGGATTGAGTAGTTTTTTAGAATCAGACTTTTT
TGGACCGGACTTTTGATCACTCCAGACGCCGCTTGGAAGTCTCTTGCTCA
AGAAAGGGCCGCTAAAGGAGCGGCCTCAAACCAACCTTTCTCTCCCCCGC
CCGGAGGCCGATCTAAAAAAAATTACTTTGGCCGCTTTAAGGCCAGGGGT
AACGCTTTGGGCTGGTCGGTCTTTTGTGTACTCCAAATCGCTTGAGGAGT
CACAAATTGTGTTCACTCATAATGTACCACCGTAACTTGTTCTAATGTCG
CAGAATGTAGACTTCCCTTGTCTAATTCCAAAACTCTTTTTTAGAGAGCT
GAAAATAATAGAAAGGTGGAAACTTTTTTTCTTTGCTTAGTGGTCAGAAG
TAAAAAATCCTTTTCAATCAGCAATTCCATCTTTCATATTACACCTATCT
CTTAACCCTATTCGGCCTAGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAAAGACCCACTAGATCAAA
AGTTAAGGGGTGGTACAGGAAAAGCCCCCCCCCCCTAGTTCTGAACCGCC
CCTAAAAGCCTAGGTTGAATAGGGTTAAGAAGGGTGTCGGGATGTTGATA
TTAGACCAACTTATGGTATTGACAGCTTTTGGCATTTCAGTCGATTTTGA
TCTTCATTTCCAATACACCTATAACAAGTGTGCATGTTTTTATTGTGTTT
GCTGCTTCAATTGGTAGATCTTGGGTGTTTTTGGTTGCAATTATAATATT
ATAATATTTCCTTATTCAACGCGTACTAAGAATGTCAGTGAAAAATGTAC
ACAAATGTACAAATTTTTACCATTTTTCATGTAAAATTCGAAAAATCCCT
AGGAAAATGAAAAAATGTGAAAGAAATGTGGCAAAACTGCAAAAATTAAA
TCATGCAAAAAACAAATCTTGCAAAATGCAATTTGCTGGAACTTTTTAAC
AATCAGGAAAATCAGTTTCTAAAAAATTATTCAAAATTAGTTCCCTTGAT
AAGGTAATGTGATTTTTTGCATCTTTATATTTCAAGGTAGAAAGTACTCA
AAATGGAATGGAATATGCTTCCTGCAGGTGTTGTGAAAAAAATATTGAGT
GGTGGCCAAGGTGAGCTGANAAATGGAATGGAATATGCTTCCAGCAGGTG
TTGTGAAAAAGATATTGAGTGGTGGCAAAGGTGAGCTGGCTTCTTTTCCA
GATGGATCAAAGGTTTGGTTCCATTTTAGAACATTTGTGATAAAAGAGGG
TGATGAAAGGCAACTTTTGGATGACAGCAGAGTTCAGAGTGATGCATTTG
AGCTTTTGATTGGAAAACAATTTAAGTTGGATGTATGGGAGAAGTTGATT
AAAACAATGCGAATCAATGAAGTTGCTGAATTCATTTGCCAGCCAGCTTT
GGTTGGAAGTTACCCTATCGTCTCTAAAAGCCTAAGAGGTATTTGGTCCA
AAGATAAAGATAAAACTGAACACAAACACCAGTGTGGATTCGCAGCTCTT
TCTGAAGGATTGGGCTACAGTGACTTAGATGAGTACGTAAAGAATCCTTC
TCCACTTGCCTTTCAAATTGAGCTTGTCAAACTTGAATTGCCAGGAGAAT
ACGAGCAAGATCTCTGGTCAATTTCTATAGATGAGAAAGCTAAACTCATT
CCCAAATGGAAAGAGGAAGGTAATCAGTTGTATAAAGATGGTAAGTTTGA
TGCAGCAAGTAAGAAATATTCAGGGGCGTTAGGATGTTTAGAGCAGTTGT
CAACAAGGGAAAAGCCAGGGAGTAATGAATGGCAAGAAATTGAACAACAG
AAAATTCCTTTTTTGTTGAATTTCTCTCAATGCATGTTGAAGACAAAAGA
ATACTATAAAGCTATTGAACATTTAACCACTGTATTAGAAAAAGACTCAA
AGAATGTCAAAGCTTATTTCCGTCGTGCTTCTGCCTATCATTTTGTTTTT
AACTTTCATAAAGCAAAACTTGACTACAAACAAGCAAAAGAACTGGACAA
ATCATTGACTAAAACTATTGACAAAGAGCTTGCACTAATTGACAAAGATG
AAGCCCAGAAAAATAAAGAGGATAAAGAAAAATATAAGAATGCATTTGCA
TGATATTTTATTTAAATTTATGTATAGTGATGAGGTAAATTTCTGTAAAG
CACTAAATTCAATTTAAGACTTCGATTTTATATTTTATGATCATTATGCG
ATCTTCGATCCATTTGTTCTCAAACTTTTATCATATTCATCAATATTTTA
TTAGACTTCACTTATGTGGATTTTAACTTTAGGGATTTAAATTTTATTGA
ATTATCAACTATGGTAATCTGACTTTTTCAAAGCTCTATATTGCTCTGAT
AAGC

Coding sequence (CDS) from alignment at sc0000435:143583..154586-

>TCONS_00022866 ID=TCONS_00022866|Name=TCONS_00022866|organism=Clytia hemisphaerica|type=CDS|length=1986bp|location=Sequence derived from alignment at sc0000435:143583..154586- (Clytia hemisphaerica)
GTGTTGTGAAAAAGATATTGAGTGGTGGCAAAGGTGAGCTGGCTTCTTTT
CCAGATGGATCAAAGGTTTGGTTCCATTTTAGAACATTTGTGATAAAAGA
GGGTGATGAAAGGCAACTTTTGGATGACAGCAGAGTTCAGAGTGATGCAT
TTGAGCTTTTGATTGGAAAACAATTTAAGTTGGATGTATGGGAGAAGTTG
ATTAAAACAATGCGAATCAATGAAGTTGCTGAATTCATTTGCCAGCCAGC
TTTGGTTGGAAGTTACCCTATCGTCTCTAAAAGCCTAAGAGGTATTTGGT
CCAAAGATAAAGATAAAACTGAACACAAACACCAGTGTGGATTCGCAGCT
CTTTCTGAAGGATTGGGCTACAGTGACTTAGATGAGTACGTAAAGAATCC
TTCTCCACTTGCCTTTCAAATTGAGCTTGTCAAACTTGAATTGCCAGGAG
AATACGAGCAAGATCTCTGGTCAATTTCTATAGATGAGAAAGCTAAACTC
ATTCCCAAATGGAAAGAGGAAGGTAATCAGTTGTATAAAGATGGTAAGTT
TGATGCAGCAAGTAAGAAATATTCAGGGGCGTTAGGATGTTTAGAGCAGT
TGTCAACAAGGGAAAAGCCAGGGAGTAATGAATGGCAAGAAATTGAACAA
CAGAAAATTCCTTTTTTGTTGAATTTCTCTCAATGCATGTTGAAGACAAA
AGAATACTATAAAGCTATTGAACATTTAACCACTGTATTAGAAAAAGACT
CAAAGAATGTCAAAGCTTATTTCCGTCGTGCTTCTGCCTATCATTTTGTT
TTTAACTTTCATAAAGCAAAACTTGACTACAAACAAGCAAAAGAACTGGA
CAAATCATTGACTAAAACTATTGACAAAGAGCTTGCACTAATTGACAAAG
ATGAAGCCCAGAAAAATAAAGAGGATAAAGAAAAATATAAGAATGCATTT
GCATGAAAAGTACTCAAAATGGAATGGAATATGCTTCCTGCAGGTGTTGT
GAAAAAGATATTGAGTGGTGGCAAAGGTGAGCTGGCTTCTTTTCCAGATG
GATCAAAGGTTTGGTTCCATTTTAGAACATTTGTGATAAAAGAGGGTGAT
GAAAGGCAACTTTTGGATGACAGCAGAGTTCAGAGTGATGCATTTGAGCT
TTTGATTGGAAAACAATTTAAGTTGGATGTATGGGAGAAGTTGATTAAAA
CAATGCGAATCAATGAAGTTGCTGAATTCATTTGCCAGCCAGCTTTGGTT
GGAAGTTACCCTATCGTCTCTAAAAGCCTAAGAGGTATTTGGTCCAAAGA
TAAAGATAAAACTGAACACAAACACCAGTGTGGATTCGCAGCTCTTTCTG
AAGGATTGGGCTACAGTGACTTAGATGAGTACGTAAAGAATCCTTCTCCA
CTTGCCTTTCAAATTGAGCTTGTCAAACTTGAATTGCCAGGAGAATACGA
GCAAGATCTCTGGTCAATTTCTATAGATGAGAAAGCTAAACTCATTCCCA
AATGGAAAGAGGAAGGTAATCAGTTGTATAAAGATGGTAAGTTTGATGCA
GCAAGTAAGAAATATTCAGGGGCGTTAGGATGTTTAGAGCAGTTGTCAAC
AAGGGAAAAGCCAGGGAGTAATGAATGGCAAGAAATTGAACAACAGAAAA
TTCCTTTTTTGTTGAATTTCTCTCAATGCATGTTGAAGACAAAAGAATAC
TATAAAGCTATTGAACATTTAACCACTGTATTAGAAAAAGACTCAAAGAA
TGTCAAAGCTTATTTCCGTCGTGCTTCTGCCTATCATTTTGTTTTTAACT
TTCATAAAGCAAAACTTGACTACAAACAAGCAAAAGAACTGGACAAATCA
TTGACTAAAACTATTGACAAAGAGCTTGCACTAATTGACAAAGATGAAGC
CCAGAAAAATAAAGAGGATAAAGAAAAATATAAGAATGCATTTGCATGAA
AAGTACTCAAAATGGAATGGAATATGCTTCCTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012852XLOC_012852Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022866-proteinTCONS_00022866-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022866-exon-sc0000435-1575043694:154586..154586TCONS_00022866-exon-sc0000435-1575043694:154586..154586Clytia hemisphaericaexon
TCONS_00022866-exon-sc0000435-1575043694:144860..144896TCONS_00022866-exon-sc0000435-1575043694:144860..144896Clytia hemisphaericaexon
TCONS_00022866-exon-sc0000435-1575043694:143583..144789TCONS_00022866-exon-sc0000435-1575043694:143583..144789Clytia hemisphaericaexon
TCONS_00022866-exon-sc0000435-1510915933:154586..154586TCONS_00022866-exon-sc0000435-1510915933:154586..154586Clytia hemisphaericaexon
TCONS_00022866-exon-sc0000435-1510915933:144860..144896TCONS_00022866-exon-sc0000435-1510915933:144860..144896Clytia hemisphaericaexon
TCONS_00022866-exon-sc0000435-1510915933:143583..144789TCONS_00022866-exon-sc0000435-1510915933:143583..144789Clytia hemisphaericaexon
TCONS_00022866-exon-sc0000435-1491911889:154586..154586TCONS_00022866-exon-sc0000435-1491911889:154586..154586Clytia hemisphaericaexon
TCONS_00022866-exon-sc0000435-1491911889:144860..144896TCONS_00022866-exon-sc0000435-1491911889:144860..144896Clytia hemisphaericaexon
TCONS_00022866-exon-sc0000435-1491911889:143583..144789TCONS_00022866-exon-sc0000435-1491911889:143583..144789Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000435supercontigsc0000435:143583..154586 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.018202	5.24289	1.94258	3.7778e-05	11.4916	15.826	3.82465	6.72121	0.0084567	0.493503	9.9745	0.0367444	1.27103e-05	1.59734e-05	0.114891	0.000647369	2.58017	0.00427108	2.09454e-07	2.96182	0.0392748	2.12233	15.4179	0.00663174	5.20824e-05	2.00147	1.17331	2.21403	0	0.935467
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR001179PPIase_FKBP_dom
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00022866 vs. Swiss-Prot (Human)
Match: AIP (AH receptor-interacting protein OS=Homo sapiens GN=AIP PE=1 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 1.248e-92
Identity = 138/321 (42.99%), Postives = 211/321 (65.73%), Query Frame = 2 
Query:   38 GVVKKILSGGKGELASFPDGSKVWFHFRTFVIKEGDERQLLDDSRVQSDAFELLIGKQFKLDVWEKLIKTMRINEVAEFICQPALVGSYPIVSKSLRGIWSKDKDKTE-HKHQCGFAALSE--GLGYSDLDEYVKNPSPLAFQIELVKLELPGEYEQDLWSISIDEKAKLIPKWKEEGNQLYKDGKFDAASKKYSGALGCLEQLSTREKPGSNEWQEIEQQKIPFLLNFSQCMLKTKEYYKAIEHLTTVLEKDSKNVKAYFRRASAYHFVFNFHKAKLDYKQAKELDKSLTKTIDKELALIDKDEAQKNKEDKEKYKNAFA 991
            G+ K+++  G+GEL  F DG+K  FH+RT  +   DE  +LDDSR +    EL+IGK+FKL VWE ++ TMR  E+A+F+C    V  YP+V+KSLR I +  KD  E  +H CG A + E   LG++DLD   +NP PL F +E++K+E PG Y+QD W+++ +EKAK +P   +EGN+LY++G    A+ KY  A+ CL+ L  +E+PGS EW +++QQ  P LLN+ QC L  +EYY+ ++H +++L K   NVKAYF+R  A+  V+N  +A+ D+ +  ELD +L   + +EL  ++    QK++EDK +++  F+
Sbjct:   12 GIQKRVIQEGRGELPDFQDGTKATFHYRT--LHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIAQFLCDIKHVVLYPLVAKSLRNI-AVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGTYQQDPWAMTDEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPALAPVVSRELQALEARIRQKDEEDKARFRGIFS 329
The following BLAST results are available for this feature:
BLAST of TCONS_00022866 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AIP1.248e-9242.99AH receptor-interacting protein OS=Homo sapiens GN... [more]
back to top