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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022856 ID=TCONS_00022856|Name=TCONS_00022856|organism=Clytia hemisphaerica|type=transcript|length=1553bpRun BLAST on NCBI transcript from alignment at sc0000435:257847..263877+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022856 ID=TCONS_00022856|Name=TCONS_00022856|organism=Clytia hemisphaerica|type=transcript|length=6031bp|location=Sequence derived from alignment at sc0000435:257847..263877+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00022856 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 204.912 bits (520), Expect = 1.265e-55 Identity = 106/245 (43.27%), Postives = 153/245 (62.45%), Query Frame = 1
Query: 487 VDGEWGSWNSFTKCSKSCGRGFQIRSRSCTNPPPKNGGKDCVGPASDNRACNAQNCPVDGKWGNWTSFGPCTKSCEGGFKIRSRACNNPPPKYGGKDCVGDSVQNRTCNVQNCPVDGKWGNWTXXXXXXXXXXXXXQIRSRACNNPIPKYGGKDCQGMFKENRTCNTQNCPVNGGWGTWSLYGLCNKNCGGGTQQRSRTCNNPAPKYGGIKCPGVATDNRACNTQSC-----WSSYYEVNLCNGN 1206
VDG W W+ + +C++SCGRG Q R+R+C NP ++GG+ C G A + CN + CPV G W W +G C++SC G + R+R CNNPPP +GG C G Q + CN +NCP+ GKW W S+ +CS SCGGG + R+R C++P+P+YGG+ C+G ++ CN+ CP +G W WS +G C++ C GG +R RTC+NP P GG C G + + CNT C W S++ + C+ +
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSAS 4829 HSP 2 Score: 202.601 bits (514), Expect = 6.521e-55 Identity = 108/257 (42.02%), Postives = 156/257 (60.70%), Query Frame = 1
Query: 403 DFKKCDSTHKLCIGG--IGTQYVYHIGDQTVDGEWGSWNSFTKCSKSCGRGFQIRSRSCTNPPPKNGGKDCVGPASDNRACNAQNCPVDGKWGNWTSFGPCTKSCEGGFKIRSRACNNPPPKYGGKDCVGDSVQNRTCNVQNCPVDGKWGNWTXXXXXXXXXXXXXQIRSRACNNPIPKYGGKDCQGMFKENRTCNTQNCPVNGGWGTWSLYGLCNKNCGGGTQQRSRTCNNPAPKYGGIKCPGVATDNRACNTQSC 1167
D +K D++ C+ +G+ V V G + W+++ CS +CG+G Q RSR C P P NGGK C G + R C + CPVDG W W+ + CT+SC G + R+R CNNP ++GG+ C G++V+ CN++ CPV G W W +G+CS+SCG G Q R+R CNNP P +GG C G + + CN +NCP++G W TW+ + C+ +CGGG +QR+R C++P P+YGG KC G + CN+ C
Sbjct: 4498 DAQKEDTSEFECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 3 Score: 199.904 bits (507), Expect = 4.948e-54 Identity = 102/227 (44.93%), Postives = 138/227 (60.79%), Query Frame = 1
Query: 487 VDGEWGSWNSFTKCSKSCGRGFQIRSRSCTNPPPKNGGKDCVGPASDNRACNAQNCPVDGKWGNWTSFGPCTKSCEGGFKIRSRACNNPPPKYGGKDCVGDSVQNRTCNVQNCPVDGKWGNWTXXXXXXXXXXXXXQIRSRACNNPIPKYGGKDCQGMFKENRTCNTQNCPVNGGWGTWSLYGLCNKNCGGGTQQRSRTCNNPAPKYGGIKCPGVATDNRACNTQSC 1167
V G W +W + CS+SCG+G Q R+R C NPPP GG C G + + CN +NCP+ GKW W S+ C+ SC GG + R+R C++P P+YGG+ C G VQ+ CN CP G W W+ +G+CS++C GG R R C+NP P GG+ C G + + CNT CPV+G WG+W + C+ +CGGG + R R C++P P GG CPG T CN Q+C
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 4 Score: 140.584 bits (353), Expect = 1.015e-34 Identity = 75/171 (43.86%), Postives = 104/171 (60.82%), Query Frame = 1
Query: 487 VDGEWGSWNSFTKCSKSCGRGFQIRSRSCTNPPPKNGGKDCVGPASDNRACNAQNCPVDGKWGNWTSFGPCTKSCEGGFKIRSRACNNPPPKYGGKDCVGDSVQNRTCNVQNCPVDGKWGNWTXXXXXXXXXXXXXQIRSRACNNPIPKYGGKDCQGMFKENRTCNTQNCP 999
+ G+W +W S++ CS SCG G + R+R C++P P+ GG+ C G + CN+ CP G W W+ +G C+++C GG R R C+NPPP GG+ C G Q + CN CPVDG WG+W S+ CS SCGGG + R R C++P+P GG+ C G + CN Q CP
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00022856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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