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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022847 ID=TCONS_00022847|Name=TCONS_00022847|organism=Clytia hemisphaerica|type=transcript|length=2449bp
tcttactAATTTCAGATTTCatagaaaataaagatgaagtaaaataaaca
aaaagaaaaagaaaaccaaaaatgaggaaaatatttttactactAATGGC
AGTAGTTGCTGCTGAGTGCATGAGGAATGATATTGAGAAGGAAGTCTTGC
AGAAATTACAGGACCTTGCAACATGtgctttgagaaaaattaaatatACG
CATACGAAAGGAGACTGCACAGCATCTGTGGAGGTTAATTATTGCAATGG
AAAATGTGTTTCGTATACAAAGTATAAGGAAGACTATCCCTTCTTCGAAA
TGAATTGTAAATGCTGTAGGGTTACTGAAACTGAACAGAAGCCTATTAGT
ATGAAGTGTGGAAAACATGGGCTAAAGTACCAGgtGGTGTTTATTGATGA
GCCGAAAAAATGCGAATGTACAAAGTGTAATTCAGAAGAGGAGCTTCGAA
AAAGTTGAGAATGGAGAATCCGATCGGGCGATGGCGAGAAATCGGGATAA
GAGCAGCGGTTAGAAAACCTGGCAAACGTCTCCCGGTCGGGATTAAAAGA
CTcggtatttcaaattttgccaatTATTTTACGTATTATTTAAAAAANAC
GGAACAGAAACAGAAAACCTGGCAAACGTCTCTCGGTCGGGATTAAAAGA
CTcggtatttcaaattttgccaatATTTTTAcgtattatttaaaaaaaga
gaattatgttCGTATGGGTACCATCTATTTTAACGGCCAACTTATACTTA
TTTTGAAGTTGGGTTTCAATAATTTGAGTTTCAATCTGTTTCAATTTGTA
CATAGATTTTACTTTACATCATCGGAGTTTGAaagataatttgatttttt
acttgtttAGCTACTATAACTACTACTACTGCAACGtttaacaaaaataa
tataGAAACACTCTCAAGACTCTCATTTTATTTCTTACAATATTTTGTTG
TTTGGCCGTATGATATGGTAGCCTTTTCCAATTTATTTGTGAGATGTGAG
AATTTTTGAAAGCGCCGCCCTACATTTAATTCTTCTGCAACAATCTTTGG
CTAACTTATACAAGCTCTCATTTTGAAGTTCTGAGTAGATATATTGGGCA
AAAGACTAGATACCTACGATGGTATCGCATATGAAAAAAAGAACGTCTCC
TTAAAATTAATTAGTACTTAGATCAAGTCAAGTCCAGTCTCAAATATGAA
GCGATTGTCTACAAAAGAAAGGAGGTTTTCAATTCTATGTAAAACTTGCG
AAATTACGATAGATCAGTACTTTCTTCAaagtttgtatttttaaagcgga
atttataaaataatttgatgGTGTAAAAAATAGATTATGATGACGTTTTT
TTGCGATGATTATtaccaaaataacaaaaaaattaatcagaAGATTTtgt
ctaatgtttttttttatttcctttggACGTTCGCTCTTTCCGTTTTTTAA
CGTGTTTCGGCATTTTCTCTTTCCGTTTTTCTCGATTTTCCTCTTTGACA
GCTTTCTTGTTTTCCTTACGTAACTCTTTCTTGCTTTTATTTGATTCTTC
ACATTGCTCTGTCTCTGGCTCCGCCGTGTCGTCTTCATCATCAGTTGATT
CGCCGTCGTCGGTGCCGGAATCTTCAGAGCCTGACCCAGAGTCCTGGTCT
GCAAAATGTACACCCTTTTTAGCACCCGACAGTTCTTTATTCATACCGGT
CACATTAGCGTAATAAATATTTTCGGTGTCACCGTCCTTAGCTTTTTCCA
AGTCTCTTTCGTAATCAATGACCTCATCAAGGCGTTGAGGAATGTACGca
tttttaaaaacttcttCATCAATCAGATCCTTCTGTGACAACTCTTCCTC
GGTGCGCGTACTAGCTACCTTCTGCGCATGCTCCAAATAAGATTCTATAT
CTTCATCCTTAATCACCGGATCTGTCACAAACTCGAACAATTCTTTTACC
GTCATCACGGCTACGTTATGCTTACGGAAAAACGCGTTGATATTAGTACA
GTCCTTACGTAAGAACGTAAAGGCGCACGGGTGATCGTGCTCAACCGACT
GTGATACGTCAATAATGAACATCTCATCTGAAGCCGCGTTGTACAGAATA
TTGAATTCCGACAAATCGGCGTGAACCAATTTAGCTTTCCAATACAAATT
ACGTAAGATACAGACACACTGTAAATACAATTCCCGCGCCTTAGAATCAG
AGATATTTGCGTCTTTTAAGAGAGACGCGGGAAAGCCATTATCCCCTATG
AACTCCATGACGAGAACATGTGAGCGCAATATAATTGGCTCAGGACAAGG
AATACCTGCTGAATGAAGTCGCGCCAAATTTCTCATCTCCTTCTCAGCCC
ATGTTTTGACCATCTTCCTTGGGTTTCCTAGTGGGGAGAAGAAGAAATGA
GGAAAAATACTTGTAGATAGATTTGTAGCGATTACTAATCAAAAACAAA Run BLAST on NCBI transcript from alignment at sc0000435:112689..116853+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022847 ID=TCONS_00022847|Name=TCONS_00022847|organism=Clytia hemisphaerica|type=transcript|length=4165bp|location=Sequence derived from alignment at sc0000435:112689..116853+ (Clytia hemisphaerica)
tcttactAATTTCAGATTTCatagaaaataaagatgaagtaaaataaaca
aaaagaaaaagaaaaccaaaaatgaggaaaatatttttactactAATGGC
AGTAGTTGCTGCTGAGTGCATGAGGAATGATATTGAGAAGGAAGTCTTGC
AGAAATTACAGGACCTTGCAACATGtgctttgagaaaaattaaatatACG
CATACGAAAGGAGACTGCACAGCATGTAAgttgtttgatatttttctttg
ggCCAAAATTTAAATTGGGCCAAAATCCCTAACAATTAGGCGAAAAAGAG
GATAATTCGCGAACTTTAGTCAACGGGAAATTTTTAAGATTCTCAATcca
cgcaaaaattaatccataGGTAGGTTGACCACTCTCGTCATTAACCAACC
TAAAGGATAATGGGAAGGCTATGTAGAATTTTTTAgaacgtcaatttttt
tgacagtGTATAGAACGGAAAGTGTCCCATCCTCTGTTAATTTGATCTCA
TATTCTCTTAAACTCGCTACCTGCAAGTATTTTAATTACTTCGAAATGTC
TTCTTAAGAGGGATAAAATCATTTGAAATTTCTACATTCTCCGTCTAAAA
ACCTCAATTATAAATCACGCCTCGATGTTCCAGTTAAAATAAGCAAGTTT
ACGACTTTAAACTTGACGTATGTGCCTCGACTATCCCAGCCAGTATCAAA
AGAATTATATAAGTacatttggaaatatttttggtggtCCTCACAGAGAG
TGAGTGCTGACAGATACTTGAAAATCTTCTCATACAAAAGGGACAATATT
AAGCGGAATGTGGTCTAGAAATGATTTATATGACCAAACCTGACAGGCCA
TTCACTTTGAACTTTGACAGCGTTCTATTTTAAAATCGGCTGGAACAAAT
ATGTACTTTACGCGTTGACCACAACCCAGAAAATGTAACAATTAGCCAAA
ACAAGGGTTGCAAAATAAAGTTCACGtaattttattcccatgttacttgc
tttacaacttacagctgataactttatcagtgtcaataaattcgaaccaa
tcagaaataaatgtcatgtaacaagcacataaaaatttcgagtgaaagcg
tgatttgtcttccgactttaattttgcaacctgtgtatctTTTTTTCTCG
ACATTTTTCGGAATCTGTGTACTgtatttttatttaataaatTTCGCTTT
TCTTTCTCATATTTTCTAGCTGTGGAGGTTAATTATTGCAATGGAAAATG
TGTTTCGTATACAAAGTATAAGGAAGACTATCCCTTCTTCGAAATGAATT
GTAAATGCTGTAGGGTTACTGAAACTGAACAGAAGCCTATTAGTATGAAG
TGTGGAAAACATGGGCTAAAGTACCAGGTAAGCATAGACTAGCAACTTTA
CAAACAAAGGGATCAAAGTTGGTTATGATTTCCCGCACAGgctaaaaaaa
atgaagatcaggCAGGATAATTTATGCACTTTTGGCTTTCGGTGTGATGA
CGAAGATACTGAATTTGAGGAACTCATCCTAACTCATTTCTTAAGGGCTT
TtattttcgctagcgatttataaaaaaaacttataagTGTGAAAATAGAG
TACGAGaagataaaattgattttggggATCNCTTATAGGTGTGAAAATAG
AGTACGAGaagataaaattgattttggggATCAGATAGTCTaggcaagct
agacgactaattcagacatagtagaaataaagcaaagaGTAATGGAGGGG
ACAATTTATataaactaaatcccgtaacaataatcgtaataccgagttta
tgtatttgcacttttgaggacggtagagggactgaagcgatttggaaaaa
cccgcaattccgccccgcaaaatcgaggacggtaaaagtgctgatttacc
gtcgtcctcagctggtcaggatctactcaaattagaaccttaccgaaTTA
GAACCACACAtatataaactcgctattatcaTACtgtataacgcctatac
tacttactttattacacgcattataaacgactccagtctagggaTCAAAG
ACGAATTTGAGACTTTACCATAAAAATTTaccataaattattttttcagg
tGGTGTTTATTGATGAGCCGAAAAAATGCGAATGTACAAAGTGTAATTCA
GAAGAGGAGCTTCGAAAAAGTTGAGAATGGAGAATCCGATCGGGCGATGG
CGAGAAATCGGGATAAGAGCAGCGGTTAGAAAACCTGGCAAACGTCTCCC
GGTCGGGATTAAAAGACTcggtatttcaaattttgccaatTATTTTACGT
ATTATTTAAAAAANACGGAACAGAAACAGAAAACCTGGCAAACGTCTCTC
GGTCGGGATTAAAAGACTcggtatttcaaattttgccaatATTTTTAcgt
attatttaaaaaaagagaattatgttCGTATGGGTACCATCTATTTTAAC
GGCCAACTTATACTTATTTTGAAGTTGGGTTTCAATAATTTGAGTTTCAA
TCTGTTTCAATTTGTACATAGATTTTACTTTACATCATCGGAGTTTGAaa
gataatttgattttttacttgtttAGCTACTATAACTACTACTACTGCAA
CGtttaacaaaaataatataGAAACACTCTCAAGACTCTCATTTTATTTC
TTACAATATTTTGTTGTTTGGCCGTATGATATGGTAGCCTTTTCCAATTT
ATTTGTGAGATGTGAGAATTTTTGAAAGCGCCGCCCTACATTTAATTCTT
CTGCAACAATCTTTGGCTAACTTATACAAGCTCTCATTTTGAAGTTCTGA
GTAGATATATTGGGCAAAAGACTAGATACCTACGATGGTATCGCATATGA
AAAAAAGAACGTCTCCTTAAAATTAATTAGTACTTAGATCAAGTCAAGTC
CAGTCTCAAATATGAAGCGATTGTCTACAAAAGAAAGGAGGTTTTCAATT
CTATGTAAAACTTGCGAAATTACGATAGATCAGTACTTTCTTCAaagttt
gtatttttaaagcggaatttataaaataatttgatgGTGTAAAAAATAGA
TTATGATGACGTTTTTTTGCGATGATTATtaccaaaataacaaaaaaatt
aatcagaAGATTTtgtctaatgtttttttttatttcctttggACGTTCGC
TCTTTCCGTTTTTTAACGTGTTTCGGCATTTTCTCTTTCCGTTTTTCTCG
ATTTTCCTCTTTGACAGCTTTCTTGTTTTCCTTACGTAACTCTTTCTTGC
TTTTATTTGATTCTTCACATTGCTCTGTCTCTGGCTCCGCCGTGTCGTCT
TCATCATCAGTTGATTCGCCGTCGTCGGTGCCGGAATCTTCAGAGCCTGA
CCCAGAGTCCTGGTCTGCAAAATGTACACCCTTTTTAGCACCCGACAGTT
CTTTATTCATACCGGTCACATTAGCGTAATAAATATTTTCGGTGTCACCG
TCCTTAGCTTTTTCCAAGTCTCTTTCGTAATCAATGACCTCATCAAGGCG
TTGAGGAATGTACGcatttttaaaaacttcttCATCAATCAGATCCTTCT
GTGACAACTCTTCCTCGGTGCGCGTACTAGCTACCTTCTGCGCATGCTCC
AAATAAGATTCTATATCTTCATCCTTAATCACCGGATCTGTCACAAACTC
GAACAATTCTTTTACCGTCATCACGGCTACGTTATGCTTACGGAAAAACG
CGTTGATATTAGTACAGTCCTTACGTAAGAACGTAAAGGCGCACGGGTGA
TCGTGCTCAACCGACTGTGATACGTCAATAATGAACATCTCATCTGAAGC
CGCGTTGTACAGAATATTGAATTCCGACAAATCGGCGTGAACCAATTTAG
CTTTCCAATACAAATTACGTAAGATACAGACACACTGTAAATACAATTCC
CGCGCCTTAGAATCAGAGATATTTGCGTCTTTTAAGAGAGACGCGGGAAA
GCCATTATCCCCTATGAACTCCATGACGAGAACATGTGAGCGCAATATAA
TTGGCTCAGGACAAGGAATACCTGCTGAATGAAGTCGCGCCAAATTTCTC
ATCTCCTTCTCAGCCCATGTTTTGACCATCTTCCTTGGGTTTCCTAGTGG
GGAGAAGAAGAAATGAGGAAAAATACTTGTAGATAGATTTGTAGCGATTA
CTAATCAAAAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022847-exon-sc0000435-1491911889:112689..112913 | TCONS_00022847-exon-sc0000435-1491911889:112689..112913 | Clytia hemisphaerica | exon |
| TCONS_00022847-exon-sc0000435-1510915933:112689..112913 | TCONS_00022847-exon-sc0000435-1510915933:112689..112913 | Clytia hemisphaerica | exon |
| TCONS_00022847-exon-sc0000435-1575043694:112689..112913 | TCONS_00022847-exon-sc0000435-1575043694:112689..112913 | Clytia hemisphaerica | exon |
| TCONS_00022847-exon-sc0000435-1491911889:113908..114065 | TCONS_00022847-exon-sc0000435-1491911889:113908..114065 | Clytia hemisphaerica | exon |
| TCONS_00022847-exon-sc0000435-1510915933:113908..114065 | TCONS_00022847-exon-sc0000435-1510915933:113908..114065 | Clytia hemisphaerica | exon |
| TCONS_00022847-exon-sc0000435-1575043694:113908..114065 | TCONS_00022847-exon-sc0000435-1575043694:113908..114065 | Clytia hemisphaerica | exon |
| TCONS_00022847-exon-sc0000435-1491911889:114788..116853 | TCONS_00022847-exon-sc0000435-1491911889:114788..116853 | Clytia hemisphaerica | exon |
| TCONS_00022847-exon-sc0000435-1510915933:114788..116853 | TCONS_00022847-exon-sc0000435-1510915933:114788..116853 | Clytia hemisphaerica | exon |
| TCONS_00022847-exon-sc0000435-1575043694:114788..116853 | TCONS_00022847-exon-sc0000435-1575043694:114788..116853 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000435 | supercontig | sc0000435:112689..116853 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0004674 |
protein serine/threonine kinase activity |
Blast
BLAST of TCONS_00022847 vs. Swiss-Prot (Human)
Match: RIOK1 (Serine/threonine-protein kinase RIO1 OS=Homo sapiens GN=RIOK1 PE=1 SV=2) HSP 1 Score: 315.079 bits (806), Expect = 2.445e-96 Identity = 151/247 (61.13%), Postives = 189/247 (76.52%), Query Frame = -3
Query: 1665 GNPRKMVKTWAEKEMRNLARLHSAGIPCPEPIILRSHVLVMEFIGDNGFPASLLKDANISDSKARELYLQCVCILRNLYWKAKLVHADLSEFNILYNAASDEMFIIDVSQSVEHDHPCAFTFLRKDCTNINAFFRKHNVAVMTVKELFEFVTDPVIKDEDIESYLEHAQKVASTRTEEELSQKDLIDEEVFKNAYIPQRLDEVIDYERDL---------EKAKDGDTENIYYANVTGMNKELSGAKK 2378
GNPRKMVKTWAEKEMRNL RL++A IPCPEPI+LRSHVLVM FIG + PA LLK+ +S+SKARELYLQ + +R +Y A+LVHADLSEFN+LY+ ++IIDVSQSVEHDHP A FLRKDC N+N FF +H+VAVMTV+ELFEFVTDP I E++++YL A ++AS RT+EE S +D +DEEVFK AYIP+ L+EV +YERD+ + A + +NI Y VTG+ K+LSG +K
Sbjct: 237 GNPRKMVKTWAEKEMRNLIRLNTAEIPCPEPIMLRSHVLVMSFIGKDDMPAPLLKNVQLSESKARELYLQVIQYMRRMYQDARLVHADLSEFNMLYHGGG--VYIIDVSQSVEHDHPHALEFLRKDCANVNDFFMRHSVAVMTVRELFEFVTDPSITHENMDAYLSKAMEIASQRTKEERSSQDHVDEEVFKRAYIPRTLNEVKNYERDMDIIMKLKEEDMAMNAQQDNILYQTVTGLKKDLSGVQK 481
The following BLAST results are available for this feature:
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