TCONS_00022842 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00022842
Unique Name	TCONS_00022842
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1460

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000435:15711..24835+

transcript sequence

>TCONS_00022842 ID=TCONS_00022842|Name=TCONS_00022842|organism=Clytia hemisphaerica|type=transcript|length=1460bp
gtaaGCGATCTCAGGAGCCGAAAGTGGAAAATGAAAGGACTTCCAAATCT
TCCATGTGTTATCTTCTTTGCTTTACTTATACAGCAGGGGCTGAATTATC
GATTCGATGAAGATGATGAAAAAATTGTCAAGATCAACGAGCAAAAAGAA
GACCCGACGAAATCTGGTGAGCGTTTGAATGAAGAGGAATTAGATGGGTT
GGTATTGTTGGATGAAATATTTAAACATTCTCCGAATGCTGAGAAGAAAT
TCTTAGATATTGAAGATAACAATGAATCTCCCTCAGAAAATGAGATGGAA
CACGAAATGGCTCAAAATGAAACCTTAAACAATAACCAACTATCcaatga
aattgacattcttaaCCAAAACATTGCCAATGAAGATATCAGAGATTCTG
GAAATGTTCCCGACACAGAAATGGAAAGCTTACCAGAGTATTTTAACAGT
GGAGATAAGAAGGACCAAAGAAGTCAAAAGGAAGGTCAAAGAAACGTGGG
AAACATTGCCGATGAAAGCACCATTGAGGGAAACAATAATTCTCAATACA
TTCTAGACGATGAAATGAGAGATTTACCTAGAGTCTTACCAGACGTTTTA
AAgggaaagaaaatgaagactcaAAATGATTTTGACACTGAATATTATGG
AGGTTTGAATGAGACGAACTTAAACGGTGCAGAAACAGAtgacaaagaaa
ataaagaggACGAAGATTCGGATGAAGAAATCATTGAAGTAACAGAGAAA
AACTACAAACCGGAAGAATTCGAAGATGAAGGAGAAAACGAGGAAAGAGA
CGATTGGCTACAGCCTGAAACCACCTCATCAGATGAGTTCATAGATGATG
AAGAGTATGCTGATATGCCAAATCCAGTAGAAAATGAACGTTCAACTACT
AATGGTGAAGATATTGATGAGAATAAAATAACAAGCGATGCAGCGAACGA
ATTGAGTGTTTTGACCACGATGGAAGATGAAGAGATGGACTTTTTGGGAA
AGAAACTAAGATACATTATTGTTAAAAGTGACaatgatgatgacgatgat
gacgAGATCACGATGGACCGAAGAGAAAAACTACGTGCCTTGTTGAAAAA
AGATCCACTCTTTTTTGGAAGACTTTTCAGGAAAATTAAAACTGGTATTA
CAAGAGCTGCTAGAAAAATATGGAAAGGTGTTACAAAAGTTGCCAAGAAA
GTTGGCAAGACTCTTCATGGAGTAGTCAAAACTATAGCGAGAAGTAAAGT
TGGAAGATTCTTTGGGAAACTTGCAAAAAAagcatttgattttttgaaat
gtgcAATCCCTGGCCTTGAGCGTATTGATCACTGCGTCAAAGACATCGTC
AAAAGCGCTGGATCATGCATCAAAAGTACTAGAAAATGCCATATGAAAAT
TGGCGGTCTACATTCCAATTGTCTTCGTTTTTCATTGGAAAAGTCTTTCT
CAAAATCGTT

Run BLAST on NCBI

transcript from alignment at sc0000435:15711..24835+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00022842 ID=TCONS_00022842|Name=TCONS_00022842|organism=Clytia hemisphaerica|type=transcript|length=9125bp|location=Sequence derived from alignment at sc0000435:15711..24835+ (Clytia hemisphaerica)
gtaaGCGATCTCAGGTAAGTCAGCTTCATACACAATAAATTTATAAACGT
GAAGATCCATAGCAAAACTTGATGTCTCCTAGCAAAATAGTGTCAGTAAA
TTTCTTTTAGAACAATTTAAAGACCGTCACTCAAAATaagccatttcaca
gtcgaaatggatcatggatAATCAGGACTGATTACGGCTTCATACCGGCT
ttctgttggctagacgcaataatcttcaaaattgttcaaaactttggacc
gctagtaagtcgtcattagcgcgcagtggtccggAATACCCATTACGCTT
AGTGACTGTGAAATGACCTATACACTCCTTTTAAATTGACGTCGCTGGTC
CTGATCATATCGGAGTTCAATAATTGTTATAAAAATGTGTACTCAATATT
GAAATGACCCTTTATGTTCTTAGTAGgtataaaaaggaaaaacatgTTCT
TGGGTATAATGAACAACATGTTCTTGGGTATAAGGAACAATAAGTACTTT
GGTATAAGGAAAATTATGTTCTTAGGTATAAGGAAAAAGATAATAGAAGA
TAaacgtccagtcgtttatatgttcatgatctAATCAAGGAACTAAAGTA
ATTAAGTATAGAATAATTACTCATTTTTAAGTGTAGGAAATTTAAACAAC
TTATTATTATCAATTCCCATTCTAAATCGAAGGTGAACTGCTGATTGCAG
CGGCTTTAAATCAACCCTATTATAATCCATGTTACTCAGGATAAATTTAT
CCATCCAATTCACACAGTCACGTTCTTTTCCTCTTCAGTGGCTGATGCCA
GGGGAAAGCATCCTTGTTTTTAGGGCTTCTGCttatcctctagcgaaaag
agtttcGATTCGGACTACcttgttttaaaaacattttaaacgaTATACTC
CTTTGTCAAGGGTTACGACGAAAAATCtaaactcgaaaaatatatcccat
attgtactcggtaccgtgtgataactattacgtataattcacttttttac
gaCCTCTTATAAATGCACTTTCATAAAATATCTAATTTCGAGAAGTTCGA
TTATCGCAAAGTGTcgtaaaattcgaagttattcaaattttttttcaaaa
atcactttaaaaagtcaagCTTTTCGAACTTAagtttaaggtcataaaac
ctatactttttatgTACCTTtacttatggtaggtatgaaaaaaCCACTTT
CTTCTCCATGGTTACACACAAAAGAAGTCGTAAGGCCCTGAAACAAAGTT
TGATTATTTATTGTCGTGGcttaccaaaatgtcacaaatttgatggagat
ttagaaaaacattagtaccatacgtcaaaaatgaagtcaataaaagtttt
gaaccTTCAAATCTTCAAAGCCGATTTTTGACAAGAAACAGgcgcaattg
cattatgggcatagaatcctgaaaaatataaatattgtaTTGGGAATGGA
TTTCTAGCAAATATTTGATGAATTGAATCACGGCTCAGCACgaattgcaa
tttcacagtTTTAGTAGGTTGTGAGCAAGGGTTcaatgtttgtaggtttt
aatAGTGATGGTTTTAAGGTGTTTTAACTTTGCAGTTCATAATTTTGAAC
CAAAAgggttattttataaaaagttattcgagaaaaactatcttttgaag
ttttgaagCCAGGTAAATAGCTAAAAGGCCATTTTTTCTCTTCCTCGTGA
AAAAGCGAAAACTGGTTTCTGCAATACATCCCTGCTTGGGTAGAAAACCC
TAGACAGCGTggtactttcaacacaaaaagtttcagcctcaaatTATACC
TAAATTTTCAGAAAGAGGGTATCTCTATCacttgtaggttttaaggggta
tccactggtaaaaTGAATTGAGCGTCCTaccgtcatcaaaactaaagagg
aaaagaaagtgATATAATGCAATGAAATCTTAGGATTTGTAACGTCGGCT
GGACTAAATATAATTGGATGGTGAAAATTAATGAATCCAAGCTTATTAGA
CAAAAGAAAGAGGAAAGATAGCCATGAAAAGGCATTTTGAACGATATATA
GAGCTATTTTAATCACATATATAACATCGGCTGGATTAAATCTAATTGGA
TGGTGAAAATTAATGAAGCCAAGCTTATTAGACAAAAGAAAGAGGAAAGA
TAACCATGAAAAGGCATTTTGAGTGGTGAGTAATATTAAGATTTAATAGA
AAGTGAAGGAAATATAATTTGACAAAACACTTCTGCCATCCCTTATCTCA
TTGTCCTTGGATAAATTCACGAGAAAAAATACCTGTTTGCTTAcgctttt
ttcttttgaagacGCTTGACCAAGAATGGGAGTGTTAAAAAACCCCATTG
TTCGATTCTCGGAACTTGGAGAACGCGTTATAAAAAGGACCCTGAAAGGT
TCGATGATAACGAGGCCATAGTGAGAAGAACCAAAagaggacaccatttg
aaaatatttgtaaGCGATCTCAGGTAAGTCAGCTTCATACACAAGAAATT
TATAAACGTGAAGATCCATAGCAAAAATTGACGTCTCCTAGTGAAGTATT
GTGAGTAAATTTATTTTAGACAATTTGAAGACCCTCACTTGTCATACGCT
CCTTTAAAAACTGACGTCGTTGGTCCTAGTCATATTCGATAAATGTTATT
TGAACGCAAAGAATTCGGAGttaaataatttttatcaaattatcaatatT
GATAACTGGTCCCTTATGTTCTTGAGTATAAGGAACAACACGAGCCATAA
TAAATCccaggcaaatggagggtacggtatgtgccaccctAATGCTTAAG
GGTACCtgttttggatttccaaagtcccgctaagggtcggaaaaatcatt
tcgtctatttttgttttctcctttttagtcttGGTAAGGGTTGGAGGGTA
GAAAGCTGGGCGGCatccccccgtcagctcgcaaccctagtaccccgcCC
CCCGGGTAAAAAATCTCTTGAAATCTATTCTAGATGAttcttttttttcg
atttgTAGGAGCCGAAAGTGGAAAATGAAAGGACTTCCAAATCTTCCATG
TGTTATCTTCTTTGCTTTACTTATACAGCAGGGTAAGAAAACATTactat
tttgaagaattttgtcTATAACAACAGCTTTCTTAGATTAGAAACAATAC
TGACCTGGTAAACCTGGTTTCCTCTCATGCCCAACTAAAGAGTACAGAAT
CCTAGCTACTCCAACCTTTAATTTTCAAAGCATCGTATCGTATCCTTAAC
AAGAAGATTTAGAttacaaaattttcttataCCGAATCAAGTATTTTGCA
ACAGCAGCTTAAGTTCTAGCTAGGAAATTTGGCCGAAAATCAAGAGCTTT
TTTAAGAGCTTAAGCGCCAATCCACCTTCGGATTACAAGTAATTTATTTA
CACCCTGTGACATTTTCCCGATCTTATCAGAGTTTGCTGGAAGAATCTTA
AAGGCTATGCATTAGTAATTCCattttaaagtctgtctcaatataatttg
taGCATAGACAAAAAAGACAATACCTTTTGATAGATTCGAACTAGATGGC
AGTTTTTcgcttgttgaaaagacaataacaggagtggaatattatcataa
aaatactttaaaaatatcggaaaatgaagattgaaaaggaagaagaagaa
aatcaactacTTAAATAATCGTCctttaattatcatttttacatgagtga
ttctttgatctcAGAACGTCATtaacttgaaaaaattgttcaaaGAAATT
TGTTCCGTCGAAAGATACAGTGCAAAATTTATCACTGATTGACtacaaaa
accatcaaaaaacaacaaaaaagagtcctttttcaaattaaccagggcaa
agttttaagctgtattttttgactgaatgaaaatttcatgaatttttttt
cgcatttatgacgttctaagattaaagaatttctgatataaaaatgaaga
tcatagcattGTTCTACGAGAAGCTGAGTTTCTTcttattcatttttcat
cttcgtttttcgaTCCTataattcattttattttttgataacattccact
ccggattatcttttCAGCAAGCACAAAACCGCCATCTTATTCGAATTCTG
TCAAaacttttttgtctccgctgcaaattatggttctaggaaaattgccc
cgagaaaattgccccccggaaaactgcccccggaaaattgccccccggaa
aattgccccctaggaaaactgccccctaggaaaactgccccccaGAAAAT
NaaaattttcgaaaaatagattattttggtgggaactttttTAGGGGAAt
actgaaattaattttttaactgtggttggaattaattttagcgaatgaca
gcgcaaatctgttctatttcatcttattttgagcaacttaaatggggaaa
gatttttttgaaagttatttTATTACTCGACTATCTTTCTCCACCTcata
caaaacttgtaaaagtcGTTTTTGAGGCGTCTTTTTTCTTTAGGAAAAAA
CTAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTCTCCACCTcatacaaaacttgtaaaagtcg
tttttgaggcgtcttttttctttaagaaaaaactaaaaactaaaacatgC
AAAGCAGATCAATGGTCAGCGCGAGGAATATAGTAAGAATGAAGTTATCC
ATTCCATATgaccaagaaattttgtaaaaccataaagaaaatacttgaat
agcgAAAGAAATACAGTATAAGACACATTGAAATTGACTATCGCTAAACA
GAGAAGCTTTCTCTGTATTCCATGGTTAAACCACattattccttataaaa
agtGTCAACTTAATGAAATTACGGCTGCAACCTGCAACCGTTGGACCAAA
ATATAGCCccaaaatattctagatctcTTCATCCGTTAAGACGCGATCAC
GTAAAATTGCGTAATCCAAAATCtcccaaatgttgaaaattgagttagat
TTAGTTTCGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNttttctcgggggcaattttcct
gacaCCGCAAAGTATATTGAGACAGAATATAACTTTCCTTTTAAGGGCTG
AATTATCGATTCGATGAAGATGATGAAAAAATTGTCAAGATCAACGAGCA
AAAAGAAGACCCGACGAAATCTGGTGAGCGTTTGAATGAAGAGGAATTAG
ATGGGTTGGTATTGTTGGATGAAATATTTAAACATTCTCCGAATGCTGAG
AAGAAATTCTTAGATATTGAAGATAACAATGAATCTCCCTCAGAAAATGA
GATGGAACACGAAATGGCTCAAAATGAAACCTTAAACAATAACCAACTAT
CcaatgaaattgacattcttaaCCAAAACATTGCCAATGAAGATATCAGA
GATTCTGGAAATGTTCCCGACACAGAAATGGAAAGCTTACCAGAGTATTT
TAACAGTGGAGATAAGAAGGACCAAAGAAGTCAAAAGGAAGGTCAAAGAA
ACGTGGGAAACATTGCCGATGAAAGCACCATTGAGGGAAACAATAATTCT
CAATACATTCTAGACGATGAAATGAGAGATTTACCTAGAGTCTTACCAGA
CGTTTTAAAgggaaagaaaatgaagactcaAAATGATTTTGACACTGAAT
ATTATGGAGGTTTGAATGAGACGAACTTAAACGGTAAtcatattttattt
cattttctcattttaATTTTGACGACTCTTTTTGCTTCAAACTCTTATTA
AGGCAGGCCAGTGGCGAGCCTTTTAGACAATACTGTAGAGCCTCCgacca
taactcgaacacgcacggcgggaaacacaaacttttttcgagttatggaa
atttgaAGTTATTGAAATAGTtttataagacattgttaactgaagggacc
aaaAAATGTATTCGAGTTAAAAAGACATTCGAGTTTTAGAGGTTCGAGCT
ATAAAGACTCTTATGTATAAATATTTGCATTTCGCTTCTACGAAATAGGT
GCAGAAACAGAtgacaaagaaaataaagaggACGAAGATTCGGATGAAGA
AATCATTGAAGTGAGTGACGGCCTTCTCTCCTCTCCAAACCCTGATCTCC
TCCTCATTTGCTTAACACGAGTACatgttcttttataagcataacgttta
taagcataccgagacttgaatttttctaaaaaataagcatattacaagca
tattacTGAGCTTGCTTTTTGAGATGTGTaagtagaaaaaataatatttt
ctaatAGATGGAAAAGAAGTTgttgtaatgtaatgttgtgTTTTTGTGTT
TGAAAAGAAGACGTTGTAAACGCAGCCATTGTTCATAACTTTCCTGAAAA
ATCTTTGTGTCATTACTTATTTCCCTTTCCTCAACAAcagattttgggaa
aaattaaTATCCCTAAGCATAACTGAGCTTGTTTCCCAAAAAaatatgct
tatagaaaaacatGTGTTGGACAAGCAATCGCAATACTGTCCTACTTGAG
ATGATAATTCCCAACTGGTCCATCTGACGTTAAAAAAACGTTAGGGATGT
CACTTGAACGTTGTTATAATGTTCTCTGCCAGCTGGGTTAAAGATGAAAA
TGTGTTTCCCCACTCTTTTTTAAATACAGGTAACAGAGAAAAACTACAAA
CCGGAAGAATTCGAAGATGAAGGAGAAAACGAGGAAAGAGACGATTGGCT
ACAGCCTGAAACCACCTCATCAGATGAGTTCATAGATGATGAAGAGTATG
CTGATATGCCAAATCCAGTAGAAAATGAACGTTCAACTACTAATGGTGAA
GATATTGATGAGAATAAAGTAAGGTGCTTTTCATTATTTTCCATgtcttg
aaaattttccatgtaGAGAAAATTTTAAAGGATATTATCAAAAATCTCTC
TTATAACACTGGCTTCACTTTCCCCTCAATGTTCAAGGTTGCCATGCAAG
TTTTTTTACTTCAACCTTACGACCTTTCGAAATTGATGTAGAAGAACTCA
TCAATCTATTTAAACCCTGGACTAATTTGTACCTTCCATGTTAAACCGGA
GCTCAGAAAAAGGCGGTAGAGAGCACTAGATCTACAGCTAGACGTGAGGC
GTTTTTCTGAGCACTACAATACAATAGTTTCTTCACGGAAaccccttttt
tcaaaaaactcctaTCAAATGATTTAGGTGACTTGGGATTGAGAAACTGT
ATGCATAATACAAAGATCAGTGGACGAATCATATGTAGACTGGTTGCTTT
CTTTAGTGATTGGCGAGAGATGCTTACTTATGAAGTACCGCACTTGATCA
TAGATCTCGGTCTTCAGCTTATCGTTTCCTTTTGTGGCATGTTCATtcct
tttgtcattttgtcatttgtactcttcttattttttagtcctgttttctt
tttctttttctttttctttttcttccatAGTTTACTGGTGTTTTTTGAAT
TAGAGATTGTAATGATTAGTCGCtagtttgtattttcttcagtgcCTACG
ACTTCATTATATTTCTTTATAGATAACAAGCGATGCAGCGAACGAATTGA
GTGTTTTGACCACGATGGAAGATGAAGAGATGGACTTTTTGGGAAAGAAA
CTAAGATACATTATTGTTAAAAGTGACaatgatgatgacgatgatgacgA
GGTAAATGTTGCTAGTCACTGATAAACTGTCAATCTGTAGCTTTAAACTT
TCATAGTCTCATCCCCCATCTTATCGAGTCTATCAAAATGCGTTTTCTTT
CTTCCATTGCTATTCCTTATAAACTGCCAATCtgactttaaaagttttgt
ttttagataGGTGTGTaggagtgatatcgtttgcttactcatccaTTTTA
ATCTAagagctttttcacattgaattgacacataTGTGGAGCTTGCTTgg
tcagaaagaagaaaagaaaacattttttgtttattcaccAAGAAATCGAA
CACAATATAATAATAGGAGACACCGGCCTGATATAAGAcctgtgtctgat
atgaaatggaaATACCTATGTAAAACTCAAACCTTCAAACTTTTACAGTC
TTGCGttatccagtctatcaaaaagtaTTTTAGTAGGTGGACTCCAGGCT
ACACTTTAACAGGCTAAAAAAACTACTTGAATATTTCATGCCATTTTCTT
TTTTGCGTTAGATCACGATGGACCGAAGAGAAAAACTACGTGCCTTGTTG
AAAAAAGATCCACTCTTTTTTGGAAGACTTTTCAGGAAAATTAAAACTGG
TATTACAAGAGCTGCTAGAAAAATATGGAAAGGTGTTACAAAAGTTGCCA
AGAAAGTTGGCAAGACTCTTCATGGAGTAGTCAAAACTATAGGTAAGTAA
ATTGTTGATTctcttttaaatgaaaaatttctagACACTACCTAAAGCAA
ATTTTTCTACCCctctataatttttcttaagtatttttcttcctttttta
agCGAGAAGTAAAGTTGGAAGATTCTTTGGGAAACTTGCAAAAAAagcat
ttgattttttgaaatgtgcAATCCCTGGCCTTGAGCGTATTGATCACTGC
GTCAAAGACATCGTCAAAAGCGCTGGATCATGCATCAAAAGTACTAGAAA
ATGCCATATGAAAATTGGCGGTCTACATTCCAATTGTCTTCGTTTTTCAT
TGGAAAAGTCTTTCTCAAAATCGTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012838	XLOC_012838	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000435	supercontig	sc0000435:15711..24835 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.023898	0.0296015	0	0	0.539758	0	0	0	0	0	0	0	0	0	0	0	0.578519	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00022842 vs. Swiss-Prot (Human)

BLAST of TCONS_00022842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00022842 (transcript) - C. hemisphaerica