XLOC_012838 (gene) - C. hemisphaerica

Overview
NameXLOC_012838
Unique NameXLOC_012838
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000435:15711..24835+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_012838 ID=XLOC_012838|Name=XLOC_012838|organism=Clytia hemisphaerica|type=gene|length=9125bp|location=Sequence derived from alignment at sc0000435:15711..24835+ (Clytia hemisphaerica)
gtaaGCGATCTCAGGTAAGTCAGCTTCATACACAATAAATTTATAAACGT
GAAGATCCATAGCAAAACTTGATGTCTCCTAGCAAAATAGTGTCAGTAAA
TTTCTTTTAGAACAATTTAAAGACCGTCACTCAAAATaagccatttcaca
gtcgaaatggatcatggatAATCAGGACTGATTACGGCTTCATACCGGCT
ttctgttggctagacgcaataatcttcaaaattgttcaaaactttggacc
gctagtaagtcgtcattagcgcgcagtggtccggAATACCCATTACGCTT
AGTGACTGTGAAATGACCTATACACTCCTTTTAAATTGACGTCGCTGGTC
CTGATCATATCGGAGTTCAATAATTGTTATAAAAATGTGTACTCAATATT
GAAATGACCCTTTATGTTCTTAGTAGgtataaaaaggaaaaacatgTTCT
TGGGTATAATGAACAACATGTTCTTGGGTATAAGGAACAATAAGTACTTT
GGTATAAGGAAAATTATGTTCTTAGGTATAAGGAAAAAGATAATAGAAGA
TAaacgtccagtcgtttatatgttcatgatctAATCAAGGAACTAAAGTA
ATTAAGTATAGAATAATTACTCATTTTTAAGTGTAGGAAATTTAAACAAC
TTATTATTATCAATTCCCATTCTAAATCGAAGGTGAACTGCTGATTGCAG
CGGCTTTAAATCAACCCTATTATAATCCATGTTACTCAGGATAAATTTAT
CCATCCAATTCACACAGTCACGTTCTTTTCCTCTTCAGTGGCTGATGCCA
GGGGAAAGCATCCTTGTTTTTAGGGCTTCTGCttatcctctagcgaaaag
agtttcGATTCGGACTACcttgttttaaaaacattttaaacgaTATACTC
CTTTGTCAAGGGTTACGACGAAAAATCtaaactcgaaaaatatatcccat
attgtactcggtaccgtgtgataactattacgtataattcacttttttac
gaCCTCTTATAAATGCACTTTCATAAAATATCTAATTTCGAGAAGTTCGA
TTATCGCAAAGTGTcgtaaaattcgaagttattcaaattttttttcaaaa
atcactttaaaaagtcaagCTTTTCGAACTTAagtttaaggtcataaaac
ctatactttttatgTACCTTtacttatggtaggtatgaaaaaaCCACTTT
CTTCTCCATGGTTACACACAAAAGAAGTCGTAAGGCCCTGAAACAAAGTT
TGATTATTTATTGTCGTGGcttaccaaaatgtcacaaatttgatggagat
ttagaaaaacattagtaccatacgtcaaaaatgaagtcaataaaagtttt
gaaccTTCAAATCTTCAAAGCCGATTTTTGACAAGAAACAGgcgcaattg
cattatgggcatagaatcctgaaaaatataaatattgtaTTGGGAATGGA
TTTCTAGCAAATATTTGATGAATTGAATCACGGCTCAGCACgaattgcaa
tttcacagtTTTAGTAGGTTGTGAGCAAGGGTTcaatgtttgtaggtttt
aatAGTGATGGTTTTAAGGTGTTTTAACTTTGCAGTTCATAATTTTGAAC
CAAAAgggttattttataaaaagttattcgagaaaaactatcttttgaag
ttttgaagCCAGGTAAATAGCTAAAAGGCCATTTTTTCTCTTCCTCGTGA
AAAAGCGAAAACTGGTTTCTGCAATACATCCCTGCTTGGGTAGAAAACCC
TAGACAGCGTggtactttcaacacaaaaagtttcagcctcaaatTATACC
TAAATTTTCAGAAAGAGGGTATCTCTATCacttgtaggttttaaggggta
tccactggtaaaaTGAATTGAGCGTCCTaccgtcatcaaaactaaagagg
aaaagaaagtgATATAATGCAATGAAATCTTAGGATTTGTAACGTCGGCT
GGACTAAATATAATTGGATGGTGAAAATTAATGAATCCAAGCTTATTAGA
CAAAAGAAAGAGGAAAGATAGCCATGAAAAGGCATTTTGAACGATATATA
GAGCTATTTTAATCACATATATAACATCGGCTGGATTAAATCTAATTGGA
TGGTGAAAATTAATGAAGCCAAGCTTATTAGACAAAAGAAAGAGGAAAGA
TAACCATGAAAAGGCATTTTGAGTGGTGAGTAATATTAAGATTTAATAGA
AAGTGAAGGAAATATAATTTGACAAAACACTTCTGCCATCCCTTATCTCA
TTGTCCTTGGATAAATTCACGAGAAAAAATACCTGTTTGCTTAcgctttt
ttcttttgaagacGCTTGACCAAGAATGGGAGTGTTAAAAAACCCCATTG
TTCGATTCTCGGAACTTGGAGAACGCGTTATAAAAAGGACCCTGAAAGGT
TCGATGATAACGAGGCCATAGTGAGAAGAACCAAAagaggacaccatttg
aaaatatttgtaaGCGATCTCAGGTAAGTCAGCTTCATACACAAGAAATT
TATAAACGTGAAGATCCATAGCAAAAATTGACGTCTCCTAGTGAAGTATT
GTGAGTAAATTTATTTTAGACAATTTGAAGACCCTCACTTGTCATACGCT
CCTTTAAAAACTGACGTCGTTGGTCCTAGTCATATTCGATAAATGTTATT
TGAACGCAAAGAATTCGGAGttaaataatttttatcaaattatcaatatT
GATAACTGGTCCCTTATGTTCTTGAGTATAAGGAACAACACGAGCCATAA
TAAATCccaggcaaatggagggtacggtatgtgccaccctAATGCTTAAG
GGTACCtgttttggatttccaaagtcccgctaagggtcggaaaaatcatt
tcgtctatttttgttttctcctttttagtcttGGTAAGGGTTGGAGGGTA
GAAAGCTGGGCGGCatccccccgtcagctcgcaaccctagtaccccgcCC
CCCGGGTAAAAAATCTCTTGAAATCTATTCTAGATGAttcttttttttcg
atttgTAGGAGCCGAAAGTGGAAAATGAAAGGACTTCCAAATCTTCCATG
TGTTATCTTCTTTGCTTTACTTATACAGCAGGGTAAGAAAACATTactat
tttgaagaattttgtcTATAACAACAGCTTTCTTAGATTAGAAACAATAC
TGACCTGGTAAACCTGGTTTCCTCTCATGCCCAACTAAAGAGTACAGAAT
CCTAGCTACTCCAACCTTTAATTTTCAAAGCATCGTATCGTATCCTTAAC
AAGAAGATTTAGAttacaaaattttcttataCCGAATCAAGTATTTTGCA
ACAGCAGCTTAAGTTCTAGCTAGGAAATTTGGCCGAAAATCAAGAGCTTT
TTTAAGAGCTTAAGCGCCAATCCACCTTCGGATTACAAGTAATTTATTTA
CACCCTGTGACATTTTCCCGATCTTATCAGAGTTTGCTGGAAGAATCTTA
AAGGCTATGCATTAGTAATTCCattttaaagtctgtctcaatataatttg
taGCATAGACAAAAAAGACAATACCTTTTGATAGATTCGAACTAGATGGC
AGTTTTTcgcttgttgaaaagacaataacaggagtggaatattatcataa
aaatactttaaaaatatcggaaaatgaagattgaaaaggaagaagaagaa
aatcaactacTTAAATAATCGTCctttaattatcatttttacatgagtga
ttctttgatctcAGAACGTCATtaacttgaaaaaattgttcaaaGAAATT
TGTTCCGTCGAAAGATACAGTGCAAAATTTATCACTGATTGACtacaaaa
accatcaaaaaacaacaaaaaagagtcctttttcaaattaaccagggcaa
agttttaagctgtattttttgactgaatgaaaatttcatgaatttttttt
cgcatttatgacgttctaagattaaagaatttctgatataaaaatgaaga
tcatagcattGTTCTACGAGAAGCTGAGTTTCTTcttattcatttttcat
cttcgtttttcgaTCCTataattcattttattttttgataacattccact
ccggattatcttttCAGCAAGCACAAAACCGCCATCTTATTCGAATTCTG
TCAAaacttttttgtctccgctgcaaattatggttctaggaaaattgccc
cgagaaaattgccccccggaaaactgcccccggaaaattgccccccggaa
aattgccccctaggaaaactgccccctaggaaaactgccccccaGAAAAT
NaaaattttcgaaaaatagattattttggtgggaactttttTAGGGGAAt
actgaaattaattttttaactgtggttggaattaattttagcgaatgaca
gcgcaaatctgttctatttcatcttattttgagcaacttaaatggggaaa
gatttttttgaaagttatttTATTACTCGACTATCTTTCTCCACCTcata
caaaacttgtaaaagtcGTTTTTGAGGCGTCTTTTTTCTTTAGGAAAAAA
CTAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTCTCCACCTcatacaaaacttgtaaaagtcg
tttttgaggcgtcttttttctttaagaaaaaactaaaaactaaaacatgC
AAAGCAGATCAATGGTCAGCGCGAGGAATATAGTAAGAATGAAGTTATCC
ATTCCATATgaccaagaaattttgtaaaaccataaagaaaatacttgaat
agcgAAAGAAATACAGTATAAGACACATTGAAATTGACTATCGCTAAACA
GAGAAGCTTTCTCTGTATTCCATGGTTAAACCACattattccttataaaa
agtGTCAACTTAATGAAATTACGGCTGCAACCTGCAACCGTTGGACCAAA
ATATAGCCccaaaatattctagatctcTTCATCCGTTAAGACGCGATCAC
GTAAAATTGCGTAATCCAAAATCtcccaaatgttgaaaattgagttagat
TTAGTTTCGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNttttctcgggggcaattttcct
gacaCCGCAAAGTATATTGAGACAGAATATAACTTTCCTTTTAAGGGCTG
AATTATCGATTCGATGAAGATGATGAAAAAATTGTCAAGATCAACGAGCA
AAAAGAAGACCCGACGAAATCTGGTGAGCGTTTGAATGAAGAGGAATTAG
ATGGGTTGGTATTGTTGGATGAAATATTTAAACATTCTCCGAATGCTGAG
AAGAAATTCTTAGATATTGAAGATAACAATGAATCTCCCTCAGAAAATGA
GATGGAACACGAAATGGCTCAAAATGAAACCTTAAACAATAACCAACTAT
CcaatgaaattgacattcttaaCCAAAACATTGCCAATGAAGATATCAGA
GATTCTGGAAATGTTCCCGACACAGAAATGGAAAGCTTACCAGAGTATTT
TAACAGTGGAGATAAGAAGGACCAAAGAAGTCAAAAGGAAGGTCAAAGAA
ACGTGGGAAACATTGCCGATGAAAGCACCATTGAGGGAAACAATAATTCT
CAATACATTCTAGACGATGAAATGAGAGATTTACCTAGAGTCTTACCAGA
CGTTTTAAAgggaaagaaaatgaagactcaAAATGATTTTGACACTGAAT
ATTATGGAGGTTTGAATGAGACGAACTTAAACGGTAAtcatattttattt
cattttctcattttaATTTTGACGACTCTTTTTGCTTCAAACTCTTATTA
AGGCAGGCCAGTGGCGAGCCTTTTAGACAATACTGTAGAGCCTCCgacca
taactcgaacacgcacggcgggaaacacaaacttttttcgagttatggaa
atttgaAGTTATTGAAATAGTtttataagacattgttaactgaagggacc
aaaAAATGTATTCGAGTTAAAAAGACATTCGAGTTTTAGAGGTTCGAGCT
ATAAAGACTCTTATGTATAAATATTTGCATTTCGCTTCTACGAAATAGGT
GCAGAAACAGAtgacaaagaaaataaagaggACGAAGATTCGGATGAAGA
AATCATTGAAGTGAGTGACGGCCTTCTCTCCTCTCCAAACCCTGATCTCC
TCCTCATTTGCTTAACACGAGTACatgttcttttataagcataacgttta
taagcataccgagacttgaatttttctaaaaaataagcatattacaagca
tattacTGAGCTTGCTTTTTGAGATGTGTaagtagaaaaaataatatttt
ctaatAGATGGAAAAGAAGTTgttgtaatgtaatgttgtgTTTTTGTGTT
TGAAAAGAAGACGTTGTAAACGCAGCCATTGTTCATAACTTTCCTGAAAA
ATCTTTGTGTCATTACTTATTTCCCTTTCCTCAACAAcagattttgggaa
aaattaaTATCCCTAAGCATAACTGAGCTTGTTTCCCAAAAAaatatgct
tatagaaaaacatGTGTTGGACAAGCAATCGCAATACTGTCCTACTTGAG
ATGATAATTCCCAACTGGTCCATCTGACGTTAAAAAAACGTTAGGGATGT
CACTTGAACGTTGTTATAATGTTCTCTGCCAGCTGGGTTAAAGATGAAAA
TGTGTTTCCCCACTCTTTTTTAAATACAGGTAACAGAGAAAAACTACAAA
CCGGAAGAATTCGAAGATGAAGGAGAAAACGAGGAAAGAGACGATTGGCT
ACAGCCTGAAACCACCTCATCAGATGAGTTCATAGATGATGAAGAGTATG
CTGATATGCCAAATCCAGTAGAAAATGAACGTTCAACTACTAATGGTGAA
GATATTGATGAGAATAAAGTAAGGTGCTTTTCATTATTTTCCATgtcttg
aaaattttccatgtaGAGAAAATTTTAAAGGATATTATCAAAAATCTCTC
TTATAACACTGGCTTCACTTTCCCCTCAATGTTCAAGGTTGCCATGCAAG
TTTTTTTACTTCAACCTTACGACCTTTCGAAATTGATGTAGAAGAACTCA
TCAATCTATTTAAACCCTGGACTAATTTGTACCTTCCATGTTAAACCGGA
GCTCAGAAAAAGGCGGTAGAGAGCACTAGATCTACAGCTAGACGTGAGGC
GTTTTTCTGAGCACTACAATACAATAGTTTCTTCACGGAAaccccttttt
tcaaaaaactcctaTCAAATGATTTAGGTGACTTGGGATTGAGAAACTGT
ATGCATAATACAAAGATCAGTGGACGAATCATATGTAGACTGGTTGCTTT
CTTTAGTGATTGGCGAGAGATGCTTACTTATGAAGTACCGCACTTGATCA
TAGATCTCGGTCTTCAGCTTATCGTTTCCTTTTGTGGCATGTTCATtcct
tttgtcattttgtcatttgtactcttcttattttttagtcctgttttctt
tttctttttctttttctttttcttccatAGTTTACTGGTGTTTTTTGAAT
TAGAGATTGTAATGATTAGTCGCtagtttgtattttcttcagtgcCTACG
ACTTCATTATATTTCTTTATAGATAACAAGCGATGCAGCGAACGAATTGA
GTGTTTTGACCACGATGGAAGATGAAGAGATGGACTTTTTGGGAAAGAAA
CTAAGATACATTATTGTTAAAAGTGACaatgatgatgacgatgatgacgA
GGTAAATGTTGCTAGTCACTGATAAACTGTCAATCTGTAGCTTTAAACTT
TCATAGTCTCATCCCCCATCTTATCGAGTCTATCAAAATGCGTTTTCTTT
CTTCCATTGCTATTCCTTATAAACTGCCAATCtgactttaaaagttttgt
ttttagataGGTGTGTaggagtgatatcgtttgcttactcatccaTTTTA
ATCTAagagctttttcacattgaattgacacataTGTGGAGCTTGCTTgg
tcagaaagaagaaaagaaaacattttttgtttattcaccAAGAAATCGAA
CACAATATAATAATAGGAGACACCGGCCTGATATAAGAcctgtgtctgat
atgaaatggaaATACCTATGTAAAACTCAAACCTTCAAACTTTTACAGTC
TTGCGttatccagtctatcaaaaagtaTTTTAGTAGGTGGACTCCAGGCT
ACACTTTAACAGGCTAAAAAAACTACTTGAATATTTCATGCCATTTTCTT
TTTTGCGTTAGATCACGATGGACCGAAGAGAAAAACTACGTGCCTTGTTG
AAAAAAGATCCACTCTTTTTTGGAAGACTTTTCAGGAAAATTAAAACTGG
TATTACAAGAGCTGCTAGAAAAATATGGAAAGGTGTTACAAAAGTTGCCA
AGAAAGTTGGCAAGACTCTTCATGGAGTAGTCAAAACTATAGGTAAGTAA
ATTGTTGATTctcttttaaatgaaaaatttctagACACTACCTAAAGCAA
ATTTTTCTACCCctctataatttttcttaagtatttttcttcctttttta
agCGAGAAGTAAAGTTGGAAGATTCTTTGGGAAACTTGCAAAAAAagcat
ttgattttttgaaatgtgcAATCCCTGGCCTTGAGCGTATTGATCACTGC
GTCAAAGACATCGTCAAAAGCGCTGGATCATGCATCAAAAGTACTAGAAA
ATGCCATATGAAAATTGGCGGTCTACATTCCAATTGTCTTCGTTTTTCAT
TGGAAAAGTCTTTCTCAAAATCGTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00022842TCONS_00022842Clytia hemisphaericatranscript
TCONS_00022843TCONS_00022843Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00022843-proteinTCONS_00022843-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000435supercontigsc0000435:15711..24835 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.02	0.03	0	0	2.62	5.37	0	0	0	0	0	0	0	0	0	0	0.58	0.28	0	0	0	0