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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022833 ID=TCONS_00022833|Name=TCONS_00022833|organism=Clytia hemisphaerica|type=transcript|length=3909bpRun BLAST on NCBI protein sequence of TCONS_00022833-protein >TCONS_00022833-protein ID=TCONS_00022833-protein|Name=TCONS_00022833-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1014bp INYKMKLKMKHSLLALWTVVGICECFSAHPFTPPQQQTFSSQFISPNQYVRun BLAST on NCBI transcript from alignment at sc0000434:124708..141729- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022833 ID=TCONS_00022833|Name=TCONS_00022833|organism=Clytia hemisphaerica|type=transcript|length=17022bp|location=Sequence derived from alignment at sc0000434:124708..141729- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000434:124708..141729- >TCONS_00022833 ID=TCONS_00022833|Name=TCONS_00022833|organism=Clytia hemisphaerica|type=CDS|length=48720bp|location=Sequence derived from alignment at sc0000434:124708..141729- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00022833 vs. Swiss-Prot (Human)
Match: THSD4 (Thrombospondin type-1 domain-containing protein 4 OS=Homo sapiens GN=THSD4 PE=2 SV=2) HSP 1 Score: 180.644 bits (457), Expect = 5.465e-46 Identity = 112/357 (31.37%), Postives = 169/357 (47.34%), Query Frame = 3
Query: 1647 NHRWFISGFTNCTKKCGGGEQEMVFRCFEARGGGSNGRFVEDAKCKEGEKPAVRRRMCNVQPCPYEWKTSRWSDCSKRCGIDAVKTRRVRCSRVTHVAGRTHDETVKDELCERTDKPESEMKCPFKPCNYRWHF-DEWSECSKKCDYGMQHRDVHCRHVAGFRLPNRYCDVKYQPNGTRNCMMRYCSVGWFASQWNE-CSSQCGEGIQTRHVVCSSSTGDVLDERKCRGQQKLVTQRACNGKVCKEGV-WLSTEWTKCSTSCGMGKQFRSAFCLVQNDQGVNQVVSDVFCRTKTKPTLMKRCYEKECKPMWHTNAWSQC--NCTLGTQTRHQICMTSENRKARGCEWSSRPDMSRDC 2702
+H W G T C+ CG G Q +FRC S ++ C KP CN+ PCP W WS+CSK CG+ ++ R+V C +V A R+ TV+ C+ +KPE+ C K C+ W +W+ CS C G + RDV C G + + C++K +PN NC M C+ WF ++W+E CS++CG G++TR VVC ++ L C G + C+ C V W + W++CS CG G Q R C+ +N +V+ C KP + C+ K C W + WS C +C G + R C++ + + C+ +P+ C
Sbjct: 618 DHNWKQLGTTECSTTCGKGSQYPIFRCVHR----STHEEAPESYCDSSMKPTPEEEPCNIFPCPAFWDIGEWSECSKTCGL-GMQHRQVLCRQV--YANRSL--TVQPYRCQHLEKPETTSTCQLKICS-EWQIRTDWTSCSVPCGVGQRTRDVKCVSNIGDVVDDEECNMKLRPNDIENCDMGPCAKSWFLTEWSERCSAECGAGVRTRSVVCMTNHVSSLPLEGC-GNNRPAEATPCDNGPCTGKVEWFAGSWSQCSIECGSGTQQREVICVRKNADTF-EVLDPSECSFLEKPPSQQSCHLKPCGAKWFSTEWSMCSKSCQGGFRVREVRCLSDDMTLSNLCDPQLKPEERESC 962 The following BLAST results are available for this feature:
BLAST of TCONS_00022833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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