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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022825 ID=TCONS_00022825|Name=TCONS_00022825|organism=Clytia hemisphaerica|type=transcript|length=2706bp
AACCATTTcccaaacaaaaaatataaaaatatttttaaaaagatggAAAT
GATTATAGAATTGAATCTGTCATcgaaaacaaatgattttatgtcatgaa
agaatgacaaaaagacTTTATTCTGCTAACAGAAGACACATGAACATAAA
CTGAAGGGACACATGAGAAACAAGGTATATCACTCATAACAAAATTGAGT
TTAATGTTTGAATAAATTCAAGATGGAAAAGTTTGAGAGCATAATTATAA
GTGACGATAATTTGTTAACAAATGCCTTCAAAACTTTGAATGTTTTTCGT
GAGAATGGGGAACTTTGTGACGTTGTTCTCAAAACAGATGATGGTATTGC
AATTCCTGCTCACAAAGTTGTTTTGAGTGCTTCCTCTCCTTATTTTCGTG
CTATGTTTACACTCAACTTTGTTGAATCTTCAAGTTCATTCATCGATATG
AAGTATGTTCCTGGAACGGCGTTACGAGACATGGTGAACTATTTTTACAC
CGGACAACTCTGTGTGAATCATTTAAATGTCATTGGATTGATAGAACTTT
GCCATGTCTTACAGGTGGACGGATTGATTGAAAAATGCGAAGTTTTTCTG
AGGCGCAATCTGTCAACTCGTAATTCTCTTGGTTTGCAAGCATTTGCCAG
ACATTACTCTTTGGCTGGTTTGAAGGATCATGCCATGAGATTTAGCTGCT
GGAATTTTAGTCATATTAAGGAGGAGGAAGAATTCTTTTTGATGCCACAG
AAAGAGTTAAAACAACTGATAGCTCACGATACTTTGAAGGCACAGTCGGA
AGAAAGTATCCTTGAGGCTGCAATTAAATGGCTCGTTTATGATTTTGACA
ACAGAGAAAAACAGTTTGAGGAATTACTTGCTCACATCAGATTCCCATTG
ATGAGCCAGAAATATTTATTGGAAAGTGAGCTTGTCAAATATATTCGTGA
AAAATTTCCAACGTCTAGTAATTTGATTACCAAAGCAATAGACTACCATT
CTCAAAACCCAGGGCTTGATAacatttttgaattgaaaaacttttcaccA
CGTCTGGCCTCAGAAGATATCTTTGTAATTGGGGGTTGGTCTAATGGTCA
AAAGCTCAGTACTGTTCAGTGTTTCAATGTTGATACCTTGAAATGGACTT
CTGTAAACAATATGACTATTGCACATGTTGCAAAAGAGCATTACTTCAGA
GTTATTGTATCCCAAGATGAGCTGTATACTGTTGGCTACAATAAAGTTAT
GAAGTATGACCCTGTTGAAAGTGCTTGGTATAAATTTGCTGATGGACCAG
AAGTTCAATGTAAATGGGCAGGTGTTTGTGAATACGATAATGGATTCTAT
GTTATTGGTGGCAGTACAAATAAAACAAGTAAACGCTTCAATATTCAGAA
AGCAACATGGGAGGACCTTCCTGTTGGCCATCATGCAAGGTACTATCCTG
GAATTgctgttatgaatgaaaatttGTATGTTATCGGTGGACTGGATAAC
AAATGGAGGCCGTTGAAAGTTTGTGAAATGTATGATCCACGACAGAGAAA
ATGGATTGAAATTGCAAAGTTACGCTCTCCAAGATGGAATTTAGGTGTTG
CTACACTCAGAAATAGACTTTATGCCATTGGTGGAAATCATAATTTAGAA
CAATTTGCAAATACTGTTGAAGTGTATGACCCAAAAGAAGATAGCTGGGA
GCGCTCGGTTGCATCAATGAACTGTGGACGAAGATGTTTAGGTGTTGCAG
TTGTGAATAATTTGATTTATGTTGTAGGTGGACGAGTAACCAATACCNAG
TTGCAGTTGTGAATGATTTGATTTATGTTGTAGGTGGACGAGTAACCAAT
ACCATTGAATGCTACGATGAAGATAAAGATGAATGGAAAATAGTTGGCTC
TGTCAATTCGTGTTGTAATTTTGGATGTGTGGCATTGAGGCTGATctaat
ttgaaaatatGAAGGAGGCTTATGATGTACATACGTGGAAAGCAGATGAC
CTTTATAAAGATTTTGGAAGAATCCGAAATATTTTGTAAACACAGCTCGT
CAGGAAATTGGAGGTAGGCTTAACCCCGattaaaattatttaatgtatat
attttttaaaacgaAATGCATAAAGTTTTTTATAAAACGTACAATAAGTC
TACCATACAGTATGTTATATTTAATGACAGGTTATTTGATGTTTCCTTAT
ATCCCTTATATTTTCAATCATTATGAAGGCTTCttagtttttttcctttt
tagacCTTTTTTTGCCGTTTTTATGGCTTAAACCGCTATGTTAGTACATT
TCAACCTCACGTCGCAATGATATTATTATGCTTATAGGAAACTGTTTTCG
TCGCGGGACAGTTTTTGAGAGAATTTCGCAGCTTGTTTTGTGGTTAACCA
ATTATAATGAACTGTGATTTAAGCGCCAGATAAAGATGTTGTCCCCTCTA
TTGTGATTTTCTAACCAAATATGAACATTGCTCTGTATCCTTTTTCTCAT
CATTCAAGAGTTTTCGAATCTGTGCTTTTTATTAACAAGTGTGAGGAAAT
GTAACTATCCAACGTAATCTAATGCAATCTATCCATCAGTTTTTCATTGT
CTTATCGCTCTTACAGTACATTCGATACGAATGCACAGTTCATTTTAATT
AACCATATGTCTCAGATTGAGTTTATTTTACTGTCCGAAATTTTGTTAAA
TGAGCG Run BLAST on NCBI transcript from alignment at sc0000434:38063..43395- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022825 ID=TCONS_00022825|Name=TCONS_00022825|organism=Clytia hemisphaerica|type=transcript|length=5333bp|location=Sequence derived from alignment at sc0000434:38063..43395- (Clytia hemisphaerica)
AACCATTTCCCAAACAAAAAATATAAAAATATTTTTAAAAAGATGGAAAT
GATTATAGAATTGAATCTGTCATCGAAAACAAATGATTTTATGTCATGAA
AGAATGACAAAAAGACTTTATTCTGCTAACAGAAGACACATGAACATAAA
CTGAAGGGACACATGAGAAACAAGGTATATCACTCATAACAAAATTGAGT
TTAATGTTTGAATAAATTCAAGATGGAAAAGTTTGAGAGCATAATTATAA
GTGACGATAATTTGTTAACAAATGCCTTCAAAACTTTGAATGTTTTTCGT
GAGAATGGGGAACTTTGTGACGTTGTTCTCAAAACAGATGATGGTATTGC
AATTCCTGCTCACAAAGTTGTTTTGAGTGCTTCCTCTCCTTATTTTCGTG
CTATGTTTACACTCAACTTTGTTGAATCTTCAAGTTCATTCATCGATATG
AAGTATGTTCCTGGAACGGCGTTACGAGACATGGTGAACTATTTTTACAC
CGGACAACTCTGTGTGAATCATTTAAATGTCATTGGATTGATAGAACTTT
GCCATGTCTTACAGGTGGACGGATTGATTGAAAAATGCGAAGTTTTTCTG
AGGCGCAATCTGTCAACTCGTAATTCTCTTGGTTTGCAAGCATTTGCCAG
ACATTACTCTTTGGCTGGTTTGAAGGATCATGCCATGAGATTTAGCTGCT
GGAATTTTAGTCATATTAAGGAGGAGGAAGAATTCTTTTTGATGCCACAG
AAAGAGTTAAAACAACTGATAGCTCACGATACTTTGAAGGCACAGTCGGA
AGAAAGTATCCTTGAGGCTGCAATTAAATGGCTCGTTTATGATTTTGACA
ACAGAGAAAAACAGTTTGAGGAATTACTTGCTCACATCAGATTCCCATTG
ATGAGCCAGAAATATTTATTGGAAAGTGAGCTTGTCAAATATATTCGTGA
AAAATTTCCAACGTCTAGTAATTTGATTACCAAAGCAATAGACTACCATT
CTCAAAACCCAGGGCTTGATAACATTTTTGAATTGAAAAACTTTTCACCA
CGTCTGGCCTCAGAAGATATCTTTGTAATTGGGGGTTGGTCTAATGGTCA
AAAGCTCAGTACTGTTCAGTGTTTCAATGTTGATACCTTGAAATGGACTT
CTGTAAACAATATGACTATTGCACATGTTGCAAAAGAGCATTACTTCAGA
GTTATTGTATCCCAAGATGAGCTGTATACTGTTGGCTACAATAAAGTTAT
GAAGTATGACCCTGTTGAAAGTGCTTGGTATAAATTTGCTGATGGACCAG
AAGTTCAATGTAAATGGGCAGGTGTTTGTGAATACGATAATGGATTCTAT
GTTATTGGTGGCAGTACAAATAAAACAAGTAAACGCTTCAATATTCAGAA
AGCAACATGGGAGGACCTTCCTGTTGGCCATCATGCAAGGTTTAATAATT
TTCAATTATAATGGATTTTTTTTTCTACCACAAATATTAGTTCCCGCAAA
AAATTAGTTCCAATAAGTTAGTAATTATTTCAAACTTGTGTTTGAAAAAT
CTAAATTACTTATTATATAAGAAATAAAGATGTTTCAAGCAATAATATTT
AGAGGTCTTAATAGGCTTCAAATTGGAAAGAATCTATAATGTAGCAAACT
TTAGTTATACTATGGTAATTATTATTTTAGGTACTATCCTGGAATTGCTG
TTATGAATGAAAATTTGTATGTTATCGGTGGACTGGATAACAAATGGAGG
CCGTTGAAAGTTTGTGAAATGTATGATCCACGACAGAGAAAATGGATTGA
AATTGCAAAGTTACGCTCTCCAAGATGGAATTTAGGTGTTGCTACACTCA
GAAATAGACTTTATGCCATTGGTGGAAATCATAATTTAGAACAATTTGCA
AATACTGTTGAAGTGTATGACCCAAAAGAAGATAGCTGGGAGCGCTCGGT
TGCATCAATGAACTGTGGACGAAGATGTTTAGGTGTTGCAGTTGTGAATA
ATTTGATTTATGTTGTAGGTGGACGAGTAACCAATACCNAGTTGCAGTTG
TGAATGATTTGATTTATGTTGTAGGTGGACGAGTAACCAATACCATTGAA
TGCTACGATGAAGATAAAGATGAATGGAAAATAGTTGGCTCTGTCAATTC
GTGTTGTAATTTTGGATGTGTGGCATTGAGGCTGATCTAATTTGAAAATA
TGTAAGTCTTTCTTGATATTATTTATGATGTCTCTCTTTTTAATGATATG
ATCTTGCCCAAATTTACATACGCTAGTGGTGAAGGGGAAATTTAGGAGCT
AACAATAACGTAATGATGTCTTTTAAATGTCATTGGACTGAATGGTAGAT
TTCTACTTCAAATAAAATAGAAAATAGATTATGGTATATTCATATGGTTA
TTGTGTAATCAATGAATTTATGCACTCAGCGTGAAATCTCTTTAAAAAGA
TTGTAAGTGATATGAAAAAAATCATGTTTGAGGTTTTTTCTTTCAACCGA
CCAAATCAAATTTGGTACTTGATACTCAATTTAATTACCTTGATTAACTT
TAATTAGAAAAAATTGAGTTTCTTTTGATCTATATTTAGAGGAGATGTTT
CTGCTTTTGATATTGGCTGATGTTGTGAATGTGTGTTATTTTTCCTTTGG
AGTCTTATGTTTTCGTATTTCTCTCAATTGTGATCATTGGAATATGGAAG
GAACTTTAAAGGAAATATTTCAGATTCCCTCTNTGTATTTCTCTCAATTG
TGATCATTGGAATATGGAAGGAACTTTAAAGGAAATATTTCAGATTCCCT
CTACTTTAAAAAATAATAATCAAAGAATGGCTTTTTAAATCATTGCTTAT
TGACACTCTTAGCATTAGATTAGGAAAAATCCCTGGCTCTTGTCATTCAA
TAAAAGATAATTATGCAAATAATCTCTTTGATTCTGAATCGATTAGAATG
TATTTTGATTTGAAAAACAGGCAGTTTAATTTGAAAAGACTGACTTAGGA
ACTTTCCTATACCTACGTTATGTTTTGATTTTATTTATATAAAAGATTTC
TTGTAGGAACAAAAGAACGGGTTTAAGGGCAACACATTATAAACGGACGC
AAGGCTAATTCTTCTATTTTTTTCTGATTTCCTTTAGTTACATTTTATAA
AGGCGCTAGTTCCTGCTCTGTCATTGACCTTTTTTGTTTTTCATTTGCCT
TGGAAAAGAAGGAAGTGTAAAGTGACGTCATGCTTTTCAATTATGATGTA
ATCTTGCAATCTTATTTTCCTGACAACGTTTTTTTCTTCAATTACTGAAG
TTTCCAGGTTTTTGTTACACCAAGCCGGATAGACATAATTAATATAATAA
GTTTTACTCATTTCAAGATACTTTCGTTCATGTTTATTTTGTCGTTAAAT
TTATCCCACAACAACAAAACAGTGTTTAAGTTTTTAGAACTTTATAGAAT
GAAATTCCTTTGCTGTTTAAATTGTACACAACTCAAGCACATCATGATCT
ACAGGCCTTTGTACTTTTCAACAAGAAGACTTGTTAATTCTATAAGAATT
TTAATGTTTCAAACCTTATTGTAAAGCTTTTCTTGTTTGACTAGAGATCA
GTTCACGTTAAGTCAATAAATTTGTGTTTATTTTGTTTCAATAATGCAAA
CAAAGCCGAAATTTAAATCAATGAGTCTGAGATTTGTTATCAAATCAAAT
CACTCCTGTATCAATGTAGTCATTTTAGCATAGAGCTTATTATAACTCCA
CAATGTCTGATGATACCTTGACATGATAGCTTGTGATATAAGAAACGTTT
ACTTCAAAAACCTTATTCTTCGCCTGGTCAAAGCCCTTACTTGATGAAAA
CTAGAAAAGGTACCGCAAATCTTTCTTCCGTAAGCGACCCAAGCCCTGAT
TTAGCGGCCCAAGACCTGAATTACCAGTTCAAGACGTGGAAAACGTTGCG
ATTTCTGATACTTGCATGTTTGCCCTGATTTTAGAATAGCGCTGAAGAGC
TGAATCATCGCCTTAAAAAGGTCAAAAAACTGTTCAAATACATTAATTAC
AAAATCATCAAATGGAAGTAGGAAATAACCGTTCATTTATGCTCGTTTAT
CAAAGAAAAATCTCAGAAATCGCAAAGTTTTCCAGGTCTTGGGCCAATAA
TTCAGGTCTTGGGCCGATAATTTAGATCTTGGGCCGGTAAATCAGGGCTT
GGGTCGCTTACGGAAGTAAAATTTGCAAAGGCGCCATTGTAAAGAGAAAA
CTGATTTGCTCCGTAAAAGTCTAATAGGAAGATATTTTTCAAGCTTTGTA
ATAAGGAAAATACATGCGATTCGATAAAATTATGCTCGGTTTAAAAAGTC
AAAATTTTAAGCATGTATTAAATTTTTTGACTATTTTGAGTGTATTAAGC
AAAGTGATGTAACCTTCATGACGAATTTAATTTCCTGAACAAAAATTTAT
ACCTTATATGGAATAAAATATGGAAATAATTTTTACAAACAAAATAGGAT
TTTTATTACCCTCTAAGACACTTCAAGTGTCCAAATTTTAAAAAGTTTAA
AAGTGATGTAATTAATTTTTGTTCTATTTTTTGCCAGGAAGGAGGCTTAT
GATGTACATACGTGGAAAGCAGATGACCTTTATAAAGATTTTGGAAGAAT
CCGAAATATTTTGTAAACACAGCTCGTCAGGAAATTGGAGGTAGGCTTAA
CCCCGATTAAAATTATTTAATGTATATATTTTTTAAAACGAAATGCATAA
AGTTTTTTATAAAACGTACAATAAGTCTACCATACAGTATGTTATATTTA
ATGACAGGTTATTTGATGTTTCCTTATATCCCTTATATTTTCAATCATTA
TGAAGGCTTCTTAGTTTTTTTCCTTTTTAGACCTTTTTTTGCCGTTTTTA
TGGCTTAAACCGCTATGTTAGTACATTTCAACCTCACGTCGCAATGATAT
TATTATGCTTATAGGAAACTGTTTTCGTCGCGGGACAGTTTTTGAGAGAA
TTTCGCAGCTTGTTTTGTGGTTAACCAATTATAATGAACTGTGATTTAAG
CGCCAGATAAAGATGTTGTCCCCTCTATTGTGATTTTCTAACCAAATATG
AACATTGCTCTGTATCCTTTTTCTCATCATTCAAGAGTTTTCGAATCTGT
GCTTTTTATTAACAAGTGTGAGGAAATGTAACTATCCAACGTAATCTAAT
GCAATCTATCCATCAGTTTTTCATTGTCTTATCGCTCTTACAGTACATTC
GATACGAATGCACAGTTCATTTTAATTAACCATATGTCTCAGATTGAGTT
TATTTTACTGTCCGAAATTTTGTTAAATGAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00022825-exon-sc0000434-1575043694:41957..43395 | TCONS_00022825-exon-sc0000434-1575043694:41957..43395 | Clytia hemisphaerica | exon |
| TCONS_00022825-exon-sc0000434-1575043694:41195..41715 | TCONS_00022825-exon-sc0000434-1575043694:41195..41715 | Clytia hemisphaerica | exon |
| TCONS_00022825-exon-sc0000434-1575043694:38063..38808 | TCONS_00022825-exon-sc0000434-1575043694:38063..38808 | Clytia hemisphaerica | exon |
| TCONS_00022825-exon-sc0000434-1510915933:41957..43395 | TCONS_00022825-exon-sc0000434-1510915933:41957..43395 | Clytia hemisphaerica | exon |
| TCONS_00022825-exon-sc0000434-1510915933:41195..41715 | TCONS_00022825-exon-sc0000434-1510915933:41195..41715 | Clytia hemisphaerica | exon |
| TCONS_00022825-exon-sc0000434-1510915933:38063..38808 | TCONS_00022825-exon-sc0000434-1510915933:38063..38808 | Clytia hemisphaerica | exon |
| TCONS_00022825-exon-sc0000434-1491911889:41957..43395 | TCONS_00022825-exon-sc0000434-1491911889:41957..43395 | Clytia hemisphaerica | exon |
| TCONS_00022825-exon-sc0000434-1491911889:41195..41715 | TCONS_00022825-exon-sc0000434-1491911889:41195..41715 | Clytia hemisphaerica | exon |
| TCONS_00022825-exon-sc0000434-1491911889:38063..38808 | TCONS_00022825-exon-sc0000434-1491911889:38063..38808 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000434 | supercontig | sc0000434:38063..43395 - |
Blast
BLAST of TCONS_00022825 vs. Swiss-Prot (Human)
Match: KLH20 (Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE=1 SV=4) HSP 1 Score: 253.447 bits (646), Expect = 1.099e-72 Identity = 162/526 (30.80%), Postives = 263/526 (50.00%), Query Frame = 1
Query: 271 NAFKTLNVFRENGELCDVVLKTDDGIAIPAHKVVLSASSPYFRAMFTLNFVESSSSFIDMKYVPGTALRDMVNYFYTGQLCVNHLNVIGLIELCHVLQVDGLIEKCEVFLRRNLSTRNSLGLQAFARHYSLAGLKDHAMRFSCWNFSHIKEEEEFFLMPQKELKQLIAHDTLKAQSEESILEAAIKWLVYDFDNREKQFEELLAHIRFPLMSQKYLLESELVKYIREKFPTSSNLITKAIDY--HSQNPGLDNIFELKNFSPRLASEDIFVIGGWSNGQKLSTVQCFNVDTLKWTSVNNMTIAHVAKEHYFRVIVSQDELYTVG-------YNKVMKYDPVESAWYKFADGPEVQCKWA-GVCEYDNGFYVIGGSTNKTS----KRFNIQKATWEDLPVGHHARYYPGIAVMNENLYVIGGLDNKWRPLKVCEMYDPRQRKWIEIAKLRSPRWNLGVATLRNRLYAIGGNHNLEQFANTVEVYDPKEDSWERSVASMNCGRRCLGVAVVNNLIYVVGGRVTNTXLQ 1806
+ +N+ R++ ELCDVVL I AH+V+LSA SPYFRAMFT ES + + ++ + A+ ++++ YT Q+ V NV L+ +LQ+ + E C FL+R L N LG++AFA +S L A +F+ NF + E EEF L+P +L +I+ D L +SEE + A + W+ Y R Q ++L H+R PL+S K+L+ + + + +L+ +A +Y Q L + P E +F +GGW +G +S+V+ ++ T +W V +M+ + V V D LY VG N V +YDP + W P C+ + GV Y +GG + +R++ ++ W + R +AV+ LY +GG D PL E Y+P++ +W IA + + R +LG A ++ +YA+GG + + + + E Y+P+ + W V +M R +G+AVVN + VGG T L+
Sbjct: 53 QTLEVINLLRKHRELCDVVLVVG-AKKIYAHRVILSACSPYFRAMFTGELAESRQTEVVIRDIDERAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAFADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVMAWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYLLLPQERPLMQGPRTRPRKPIRCGEVLFAVGGWCSGDAISSVERYDPQTNEWRMVASMS----KRRCGVGVSVLDDLLYAVGGHDGSSYLNSVERYDPKTNQWSSDV-APTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGT-SPLNTVERYNPQENRWHTIAPMGTRRKHLGCAVYQDMIYAVGGRDDTTELS-SAERYNPRTNQWS-PVVAMTSRRSGVGLAVVNGQLMAVGGFDGTTYLK 569
The following BLAST results are available for this feature:
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