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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022791 ID=TCONS_00022791|Name=TCONS_00022791|organism=Clytia hemisphaerica|type=transcript|length=3228bp
aaaaaattggaaacatagtaatttcgattcccctaccccttagctttcca
aaaatgtataacaagtgcttctaacaaaacagtcgagcgattccaaaaaa
tcgaacaaaattccccctactatcaACCTGAAAACACGTCGAACGTTTTA
TTGGACGTGAATATGATAGGAAAATTATACATAAAGTCTCTAAATTTAGA
CCCTCGAAAGCTACCGTGTGTCGGCACATGAAGTTACCAATTATCAACGT
AACAGAACATGCGCTAACAAGGGTAGTCCTTGAAACTTTCAAGAACGAGG
CGAGAGAAAAGTTTTTCGTGTTGCTGAACAGCTACGTAATAAGTACTGGC
ACATCACAATAAAGCAAGTCAAATTTGCCACCGAGGTTGAGCATGTCCCT
GACCAGACAGTACGTGGGTAATTCTTTCTTACAGCATTTAAAGCCActcg
aaaaaattatttaagGAGGCGTATGGAAATACGATCTGGAACGACAATTA
CAATTTGCAAAACGCTTAAAGAAAACCATGACTGtcgaaaagctgaaaaa
tcttGAACTGgcatttgtttttatcttgaCTCAGTTAGTTTTACgcaaaa
taaaaccttttcgACGGAAGCGGCGCGGATgcgctggagtttttacaacg
tCGGCTGAAGTTTTCTTTctgtgtattttaccgaaccaGTTCGCGCGCAC
TCTTGCACATGGATCTCCTGCGAACTTACTTGAGCGAGAAGACAGAAATA
ACCACATGATCAAAATCCAGAAATTAAAGACCCAATAATACtgaattaaa
aattaattttgatcacttaaataattttctttcataATATAGAGAAGTCA
ACAATATTTAAATGCAAATTTATGTCATTTCAAAGtcctttttttattat
ttcctgaagatcaaagaaaaacaaaagatatCGTCCTCTTTCTACTTTCA
CTCGAGGGTATCAGTGCTGCAACAGAGCTTTTGGATTTAACTTTCACTGC
CTTTGGTTTGACAATCAATGTCTCGAAAACCGAAACAATGACCATCAATC
AAGAACAATATCACGATTCTATCATATGTCTTCGTGAAGAgcaactcaaa
aatgtcaaagaatTCAAATATCTTGGTGCTGTCCTTAATCACCATCAACC
AAACACAGGGGAAGCAGAAGTCAATCAACGAATTCAACTTGCAATTGTAA
AATTCGCCCAAATGTCTAACCTGCTACAAAACTTCCAAATCAACCTAAGT
GTTCGTATCTTCTTCCTCAACAGTTTCGTCAGGAGCCGGTTAACGTATTC
ATGTCAGAACTGAAACTTAACGTCTCTCCAGTACGACCGCCTCGATGTCA
CCTATAGGAAGTTTTTGAGGAGAATGGTCAGAGGTGGATTTCGTTATGTA
GATGAGGTCAATAATGATTTTCGATACGTCATTAGCAACAACCAACTCCA
AACTATATGTGGTACCTCAGATGTTAATGTTTTTatcaaacaacaacaac
gaaaCTACGCAGCTCATGTTGTGAGAATGCCTTCTGGTCGCTTGAGTAAA
TTGTTAAtgtttaatgatgataaaaattgCAAACGTGGTAGAATTTCTTT
GACTTTACTCGACCAAGTAATTAAAAATGAGAATTGTTCGATTGAAAAGT
TTTGTGGACTAGCTATTGCAAAGAAAAATGCAAGATAGACAGAGAGTCTT
CTTAAAGGGCTCTCTGTCCTTATTTTCTAGGAATAGGAAATAGTAAAAtg
ttatatatataatatataagtCGGTCAGTATTTTGTTCATTAATGTTGCG
ATGGAAAACGTGTTGATatcaacaataaaatttttaatttgatcAACTTT
CTGCAAGTATCTTCCTAAGTATCTTAGTATCAAGTGTTGTATTTGTgaat
cttttacatttttaaatattttcaaatataatctgagttttttttttgtt
atcgTTGCTGTTTATTTATTGATATTTGCTTTTTGACGCTGCTGACCACT
GTACCGGATTTATAGGACTGACACTTCTACCATATATACTATGTCAACAT
CATCAAACATTGTTGTACCGACAGCATTATCTGGAAATAGAGGAAGCAAG
AGGGGTCTGGGAGCTTGCAATGGATGTGAGAAGGAGTATGCCAGTAGAAA
AAAGCCAAAGTTTTGTGTGGATATGAGCTTGGTGGCTCCTTTGTCGCTAA
GGTGACCATGCCCACCGAGTGTGGAAATTTGATCAACAGAGGAAGAATCA
TTTCGATCCGTCAAGGTAACACCAAAGGACAATAGGGATTTTGCCCTGGC
GAgtcatcaaaatcaaatttgcTATGTCAAGAAATGTAAGGGTGCCCGTG
CATTGTCTTTGATTTCGAGTTATCTATAACTCTAGTTAATTGTTGAGACG
CTGTTTATGTTCCACAGCTACGCCCACCATTTTTGTTGTGGTTTTCTTCC
CACTGTGCGCCGTTCCGCCACTATTGTATTGTGTGATCCTCATCGTTACA
TTTTAGCGTTCCGGGCGCCCCGTCCTCCCGTATATTCTTCTTTCGTTTTG
ACTGTCTCCTTCGTTCGATAGTACTACATAGCTCAGCTCATTAAAAAATT
ATCCATATCTTCGCATATCTTCGCTGTTTTTCgttgtttttactttatca
tGGGATTCCCGAGTGGTCGTACTACCTACATATTCACTGTTGTGGTTATT
TTGTTTCGGTTCGGCGCTCCTGCCAAGCGTAAGGCTGCTTCTAACCCAGC
AGTCCCGACTACAGACCATGAACAATCCTCTCGACAAACGCATTAAGACC
CGGCTGCTGTCGTCGCTCTCCCACCGCAACAACGCTCCCTAGAACAGTGG
TCAACTCTCCCTAGAACAGTGGTCAACTCTCCCTCTGGATGCTCTTCGCA
AGCATCACAAGTATCCACATCACTTCTTACCACCACCATGTCGACCTAGT
CTTCTAACCCTGTCTCGTCCACGCTGCCCCCTTCTTCGCCGTCCATCCGT
AACGAGATGCTAGCCGTTTTGTCAACCATGTTTCCACTCCAGCAACCACC
CACGACGCCTCGCAACCCTTTGCTCCCTGACGTCgacaccattgagtttc
aagcccgaagggctagaggtcaatctctttggtaggatttgaagctaaca
aatcctaccaaagttgcgcggccttgagcgacccgcctggtttttacaca
aatgacagattgaaactaaaatttaccg Run BLAST on NCBI protein sequence of TCONS_00022791-protein >TCONS_00022791-protein ID=TCONS_00022791-protein|Name=TCONS_00022791-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MVRGGFRYVDEVNNDFRYVISNNQLQTICGTSDVNVFIKQQQRNYAAHVV
RMPSGRLSKLLMFNDDKNCKRGRISLTLLDQVIKNENCSIEKFCGLAIAK
KNAR Run BLAST on NCBI transcript from alignment at sc0000432:74171..77398 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022791 ID=TCONS_00022791|Name=TCONS_00022791|organism=Clytia hemisphaerica|type=transcript|length=3228bp|location=Sequence derived from alignment at sc0000432:74171..77398 (Clytia hemisphaerica)
cggtaaattttagtttcaatctgtcatttgtgtaaaaaccaggcgggtcg
ctcaaggccgcgcaactttggtaggatttgttagcttcaaatcctaccaa
agagattgacctctagcccttcgggcttgaaactcaatggtgtcGACGTC
AGGGAGCAAAGGGTTGCGAGGCGTCGTGGGTGGTTGCTGGAGTGGAAACA
TGGTTGACAAAACGGCTAGCATCTCGTTACGGATGGACGGCGAAGAAGGG
GGCAGCGTGGACGAGACAGGGTTAGAAGACTAGGTCGACATGGTGGTGGT
AAGAAGTGATGTGGATACTTGTGATGCTTGCGAAGAGCATCCAGAGGGAG
AGTTGACCACTGTTCTAGGGAGAGTTGACCACTGTTCTAGGGAGCGTTGT
TGCGGTGGGAGAGCGACGACAGCAGCCGGGTCTTAATGCGTTTGTCGAGA
GGATTGTTCATGGTCTGTAGTCGGGACTGCTGGGTTAGAAGCAGCCTTAC
GCTTGGCAGGAGCGCCGAACCGAAACAAAATAACCACAACAGTGAATATG
TAGGTAGTACGACCACTCGGGAATCCCatgataaagtaaaaacaacGAAA
AACAGCGAAGATATGCGAAGATATGGATAATTTTTTAATGAGCTGAGCTA
TGTAGTACTATCGAACGAAGGAGACAGTCAAAACGAAAGAAGAATATACG
GGAGGACGGGGCGCCCGGAACGCTAAAATGTAACGATGAGGATCACACAA
TACAATAGTGGCGGAACGGCGCACAGTGGGAAGAAAACCACAACAAAAAT
GGTGGGCGTAGCTGTGGAACATAAACAGCGTCTCAACAATTAACTAGAGT
TATAGATAACTCGAAATCAAAGACAATGCACGGGCACCCTTACATTTCTT
GACATAgcaaatttgattttgatgacTCGCCAGGGCAAAATCCCTATTGT
CCTTTGGTGTTACCTTGACGGATCGAAATGATTCTTCCTCTGTTGATCAA
ATTTCCACACTCGGTGGGCATGGTCACCTTAGCGACAAAGGAGCCACCAA
GCTCATATCCACACAAAACTTTGGCTTTTTTCTACTGGCATACTCCTTCT
CACATCCATTGCAAGCTCCCAGACCCCTCTTGCTTCCTCTATTTCCAGAT
AATGCTGTCGGTACAACAATGTTTGATGATGTTGACATAGTATATATGGT
AGAAGTGTCAGTCCTATAAATCCGGTACAGTGGTCAGCAGCGTCAAAAAG
CAAATATCAATAAATAAACAGCAAcgataacaaaaaaaaaactcagatta
tatttgaaaatatttaaaaatgtaaaagattcACAAATACAACACTTGAT
ACTAAGATACTTAGGAAGATACTTGCAGAAAGTTgatcaaattaaaaatt
ttattgttgatATCAACACGTTTTCCATCGCAACATTAATGAACAAAATA
CTGACCGacttatatattatatatataacaTTTTACTATTTCCTATTCCT
AGAAAATAAGGACAGAGAGCCCTTTAAGAAGACTCTCTGTCTATCTTGCA
TTTTTCTTTGCAATAGCTAGTCCACAAAACTTTTCAATCGAACAATTCTC
ATTTTTAATTACTTGGTCGAGTAAAGTCAAAGAAATTCTACCACGTTTGc
aatttttatcatcattaaacaTTAACAATTTACTCAAGCGACCAGAAGGC
ATTCTCACAACATGAGCTGCGTAGtttcgttgttgttgtttgatAAAAAC
ATTAACATCTGAGGTACCACATATAGTTTGGAGTTGGTTGTTGCTAATGA
CGTATCGAAAATCATTATTGACCTCATCTACATAACGAAATCCACCTCTG
ACCATTCTCCTCAAAAACTTCCTATAGGTGACATCGAGGCGGTCGTACTG
GAGAGACGTTAAGTTTCAGTTCTGACATGAATACGTTAACCGGCTCCTGA
CGAAACTGTTGAGGAAGAAGATACGAACACTTAGGTTGATTTGGAAGTTT
TGTAGCAGGTTAGACATTTGGGCGAATTTTACAATTGCAAGTTGAATTCG
TTGATTGACTTCTGCTTCCCCTGTGTTTGGTTGATGGTGATTAAGGACAG
CACCAAGATATTTGAattctttgacatttttgagttgcTCTTCACGAAGA
CATATGATAGAATCGTGATATTGTTCTTGATTGATGGTCATTGTTTCGGT
TTTCGAGACATTGATTGTCAAACCAAAGGCAGTGAAAGTTAAATCCAAAA
GCTCTGTTGCAGCACTGATACCCTCGAGTGAAAGTAGAAAGAGGACGata
tcttttgtttttctttgatcttcaggaaataataaaaaaaggaCTTTGAA
ATGACATAAATTTGCATTTAAATATTGTTGACTTCTCTATATtatgaaag
aaaattatttaagtgatcaaaattaatttttaattcaGTATTATTGGGTC
TTTAATTTCTGGATTTTGATCATGTGGTTATTTCTGTCTTCTCGCTCAAG
TAAGTTCGCAGGAGATCCATGTGCAAGAGTGCGCGCGAACtggttcggta
aaatacacagAAAGAAAACTTCAGCCGacgttgtaaaaactccagcgcAT
CCGCGCCGCTTCCGTcgaaaaggttttattttgcGTAAAACTAACTGAGt
caagataaaaacaaatgcCAGTTCaagatttttcagcttttcgaCAGTCA
TGGTTTTCTTTAAGCGTTTTGCAAATTGTAATTGTCGTTCCAGATCGTAT
TTCCATACGCCTCcttaaataattttttcgagTGGCTTTAAATGCTGTAA
GAAAGAATTACCCACGTACTGTCTGGTCAGGGACATGCTCAACCTCGGTG
GCAAATTTGACTTGCTTTATTGTGATGTGCCAGTACTTATTACGTAGCTG
TTCAGCAACACGAAAAACTTTTCTCTCGCCTCGTTCTTGAAAGTTTCAAG
GACTACCCTTGTTAGCGCATGTTCTGTTACGTTGATAATTGGTAACTTCA
TGTGCCGACACACGGTAGCTTTCGAGGGTCTAAATTTAGAGACTTTATGT
ATAATTTTCCTATCATATTCACGTCCAATAAAACGTTCGACGTGTTTTCA
GGTtgatagtagggggaattttgttcgattttttggaatcgctcgactgt
tttgttagaagcacttgttatacatttttggaaagctaaggggtagggga
atcgaaattactatgtttccaatttttt Coding sequence (CDS) from alignment at sc0000432:74171..77398 >TCONS_00022791 ID=TCONS_00022791|Name=TCONS_00022791|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0000432:74171..77398 (Clytia hemisphaerica)
CTATCTTGCATTTTTCTTTGCAATAGCTAGTCCACAAAACTTTTCAATCG
AACAATTCTCATTTTTAATTACTTGGTCGAGTAAAGTCAAAGAAATTCTA
CCACGTTTGcaatttttatcatcattaaacaTTAACAATTTACTCAAGCG
ACCAGAAGGCATTCTCACAACATGAGCTGCGTAGtttcgttgttgttgtt
tgatAAAAACATTAACATCTGAGGTACCACATATAGTTTGGAGTTGGTTG
TTGCTAATGACGTATCGAAAATCATTATTGACCTCATCTACATAACGAAA
TCCACCTCTGACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022791-exon-sc0000432-1491911889:74171..77398 | TCONS_00022791-exon-sc0000432-1491911889:74171..77398 | Clytia hemisphaerica | exon |
| TCONS_00022791-exon-sc0000432-1510915933:74171..77398 | TCONS_00022791-exon-sc0000432-1510915933:74171..77398 | Clytia hemisphaerica | exon |
| TCONS_00022791-exon-sc0000432-1575043694:74171..77398 | TCONS_00022791-exon-sc0000432-1575043694:74171..77398 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000432 | supercontig | sc0000432:74171..77398 . |
Blast
The following BLAST results are available for this feature:
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