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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022787 ID=TCONS_00022787|Name=TCONS_00022787|organism=Clytia hemisphaerica|type=transcript|length=2916bp
caaaaaacagaaaaaagtaatgagccaatcccgagaaaagctggtaacag
acgaaagaacgaacggacgaacatgggttaatttaaaggatcTCCaacgg
ggtacccggaggtaggtccaaaaaagttaagattgAGAAAGTGGCAGTGA
AGATTTCACAAGTCAGCGCATTTAAGAAAGTCagtaatttctaatttttc
ttacTTGCGGTTGAATTTGTAGCGTTGCTTCTATGAAGCACCTTTTGTTC
TCTTTTAGCCAAAAAAATTACACATGATTTTGtggattatttttcatttt
agattAGCCCCACTGAATTTGCCGTTCCTACTACTATCGATGATAGTAGT
TTGTTGGAATTACATGAACTTTACGTTGCATTGAAGAAAAGAACCCTGGC
CTTAAGATTGGATTCTCCAAATTCTGTTCTCCCCGAAAAAAATGGTGCGT
TATTGCAGGTTCCTCTGGTACCCATTCTGTTTGTGTTTGCACTATTCATC
AAAATACCATTCTTTTGTTAGTAGTTGGTATAAACTGAGATATTACATAC
AAGGATATGATTGCAAGAGTTacttatttattcatttattgaGAAATTTC
GCTAGCGCGCAGCTCGAAGTTGGCCTAGTGGtataaggcgctggttttat
ttatttaatacttattttcatttagtttaatttagtttaatattttatAG
TTAATATTTTATATTTCCAGTAGAGAATGTATGACATGTCACCTGGGAAG
TTTCGATGGATCAATGGCGATAAATCACCATACAAAAAATGGTGTAATGG
TGTGAACCCTTCATCCTCGACTGGTTGTGTTGTCTTCAACATGGAAAATC
TGGTCGATGAAGAAGGATGTTTTGATATCGAATCATGTGATATGGCCAAC
AACAGGTTTCTTTGTCAATCGAGACAAATTCGTCCTGAGACTTTGGTTCA
agtcatttcaaaacaaattgaaGAAACACGAAATAAATGTATATCGTGTA
CGAGGGATTAATTTTTATTATCACAGATGCTGTAACATGTTAACCTTTTC
AGTACAGCAGCGTAGACAAGATTCTGAGTTCCATTACTCACAGTGGCAAA
AAAGAGATTATACAACACTAGTAACAATAACAACAACCCTTGAAGAGTAC
AAGGAAAGTTTAATTGAAGCTATTGATTCCTTGACAAGACATTCATATCT
TGTCAAAAGACAAGCCAACTTTTTGAAAACAGAGAAGGATGAATCACTGA
AAAGAAATGAAGTGATTGTTCTTGGGGACTTCGCTGAGAATTATCAGTTT
CTTATCCAAGGTGAGATACAATCTTATGATTGGAGTAAAAACTATTGCAC
GTTGCATTCAATTGTAATGTATTTTGTTGATGAAAAAGGAGAGCTCAACA
CGAGTcgttttgtttcatttctgATGACAATACACATGACAAATTCGGAG
ATGTTGACATGTATTATTCAAATACTCTTATCTTAAAAGAGAAGGAAAAA
ACATCGAACAGCATCAAAGTACACAAAAGCTTACTGAAGAAACAGTAATG
ATAATCTGTTTAACAAAAAGATTGTCAAATATGGTGATACATCAAAGAAA
AgtcttaagcgttttaaaaagattttgcaGTCGTcttcaaatacaaaaaa
agtgATTGAGAAAAAGATTGAGAAAGTGGCAGTGAAGATTTCACAAGTCA
GCACATTTAAGAAAGTCAGTAATTTCTAATTTTCCTTACTTGCGGTTGAA
TTTGTAGCGTTGCTTCTATGAAGCACCTTTTGTTCTCTTTTAGCCAAAAA
AATTACACATGATtttgttgattattttttcattttagattaGCCCCACT
GGATTTGCCGTTCCTACTACTATCGATGATAGTAGTTTGTTGGAATTACA
TAAACTTTACGTTGCATTGAAGAAAAGAACCCTGGCCTTAAGATTGGATT
TTACAAATTCTGTTCTTCCCGACCAAAATGGTGCGTTATTACAGGTTCCT
CTGGTACCCATTCAGTTTGTGTTTGCACTATTCATCAAAATACCATTCTT
TTGTTAGTAGTTGGTATAAACTGAGATATTACATACAAGGATATGATTGC
ATGAGTTacttatttattcatttattgaGAAATTTCGCTAGCGCGCAGCT
CGAAGTTGGCCTAGTGGtataaggcgctggttttatttatttaatatttt
ataTTTCCAGTAGAGAATGTATGACATGTCACCTGGGAAGTTTCGATGGA
TCAATGGCGATAAATCACCATACAAAAAATGGTGTAATGGTGTGAACACT
TCAGCCTCATCAACTGGTTGTGTTGTCTTCAACATGGAAAATCTGGTCGA
TGGAGAAGGATGTTTTGATATCGAATCATGTGATATGACCAACAACAGGT
TTCTTTGTCAATCGAGACAAATTCGTCCTGAGACTTTGGTTCAAGtcatt
tcgaaacaaattgAAGAAACACGAAATAAATGTATATCGTTTACAAGAGA
TTAATTCTTATTATCACAGATGCTGTAACATGTTAACCTTTTCAGTACAG
CAGCGTAGACAAGATTCTGAGTTCCATTACTCACAGTGGCAAAAAAGAGA
TTATACAACACTAGTAACAATAACAACAACCCTTGAAGAGTACAAGGAAA
GTTTAATTGAAGCTATTGATTCCTTGACAAGACATTCATATCTTGTCAAA
AGACAAGCCAACTTTTTGAAAACAGAGAAGGATGAATCACTGAAAAGAAA
TGAAGTGATTGTTCTTGAGGACTTCGCTGAGAATCATTAGTTTCTTATCC
AAGGTGAGATACAATCTTATGATTGGAGTAAAAACTATTGCACGTTGCAT
TCAATTGTAATGTATTTTgttgatgaaaaagaagaactCAACACCAgttg
ttttgtttcatttctg Run BLAST on NCBI protein sequence of TCONS_00022787-protein >TCONS_00022787-protein ID=TCONS_00022787-protein|Name=TCONS_00022787-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MKKDVLISNHVIWPTTGFFVNRDKFVLRLWFKSFQNKLKKHEINVYRVRG
INFYYHRCCNMLTFSVQQRRQDSEFHYSQWQKRDYTTLVTITTTLEEYKE
SLIEAIDSLTRHSYLVKRQANFLKTEKDESLKRNEVIVLGDFAENYQFLI
QGEIQSYDWSKNYCTLHSIVMYFVDEKGELNTSRFVSFLMTIHMTNSEML
TCIIQILLS Run BLAST on NCBI transcript from alignment at sc0000432:58763..61678 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022787 ID=TCONS_00022787|Name=TCONS_00022787|organism=Clytia hemisphaerica|type=transcript|length=2916bp|location=Sequence derived from alignment at sc0000432:58763..61678 (Clytia hemisphaerica)
cagaaatgaaacaaaacaacTGGTGTTGagttcttctttttcatcaacAA
AATACATTACAATTGAATGCAACGTGCAATAGTTTTTACTCCAATCATAA
GATTGTATCTCACCTTGGATAAGAAACTAATGATTCTCAGCGAAGTCCTC
AAGAACAATCACTTCATTTCTTTTCAGTGATTCATCCTTCTCTGTTTTCA
AAAAGTTGGCTTGTCTTTTGACAAGATATGAATGTCTTGTCAAGGAATCA
ATAGCTTCAATTAAACTTTCCTTGTACTCTTCAAGGGTTGTTGTTATTGT
TACTAGTGTTGTATAATCTCTTTTTTGCCACTGTGAGTAATGGAACTCAG
AATCTTGTCTACGCTGCTGTACTGAAAAGGTTAACATGTTACAGCATCTG
TGATAATAAGAATTAATCTCTTGTAAACGATATACATTTATTTCGTGTTT
CTTcaatttgtttcgaaatgaCTTGAACCAAAGTCTCAGGACGAATTTGT
CTCGATTGACAAAGAAACCTGTTGTTGGTCATATCACATGATTCGATATC
AAAACATCCTTCTCCATCGACCAGATTTTCCATGTTGAAGACAACACAAC
CAGTTGATGAGGCTGAAGTGTTCACACCATTACACCATTTTTTGTATGGT
GATTTATCGCCATTGATCCATCGAAACTTCCCAGGTGACATGTCATACAT
TCTCTACTGGAAAtataaaatattaaataaataaaaccagcgccttataC
CACTAGGCCAACTTCGAGCTGCGCGCTAGCGAAATTTCtcaataaatgaa
taaataagtAACTCATGCAATCATATCCTTGTATGTAATATCTCAGTTTA
TACCAACTACTAACAAAAGAATGGTATTTTGATGAATAGTGCAAACACAA
ACTGAATGGGTACCAGAGGAACCTGTAATAACGCACCATTTTGGTCGGGA
AGAACAGAATTTGTAAAATCCAATCTTAAGGCCAGGGTTCTTTTCTTCAA
TGCAACGTAAAGTTTATGTAATTCCAACAAACTACTATCATCGATAGTAG
TAGGAACGGCAAATCCAGTGGGGCtaatctaaaatgaaaaaataatcaac
aaaATCATGTGTAATTTTTTTGGCTAAAAGAGAACAAAAGGTGCTTCATA
GAAGCAACGCTACAAATTCAACCGCAAGTAAGGAAAATTAGAAATTACTG
ACTTTCTTAAATGTGCTGACTTGTGAAATCTTCACTGCCACTTTCTCAAT
CTTTTTCTCAATcactttttttgtatttgaagACGACtgcaaaatctttt
taaaacgcttaagacTTTTCTTTGATGTATCACCATATTTGACAATCTTT
TTGTTAAACAGATTATCATTACTGTTTCTTCAGTAAGCTTTTGTGTACTT
TGATGCTGTTCGATGTTTTTTCCTTCTCTTTTAAGATAAGAGTATTTGAA
TAATACATGTCAACATCTCCGAATTTGTCATGTGTATTGTCATcagaaat
gaaacaaaacgACTCGTGTTGAGCTCTCCTTTTTCATCAACAAAATACAT
TACAATTGAATGCAACGTGCAATAGTTTTTACTCCAATCATAAGATTGTA
TCTCACCTTGGATAAGAAACTGATAATTCTCAGCGAAGTCCCCAAGAACA
ATCACTTCATTTCTTTTCAGTGATTCATCCTTCTCTGTTTTCAAAAAGTT
GGCTTGTCTTTTGACAAGATATGAATGTCTTGTCAAGGAATCAATAGCTT
CAATTAAACTTTCCTTGTACTCTTCAAGGGTTGTTGTTATTGTTACTAGT
GTTGTATAATCTCTTTTTTGCCACTGTGAGTAATGGAACTCAGAATCTTG
TCTACGCTGCTGTACTGAAAAGGTTAACATGTTACAGCATCTGTGATAAT
AAAAATTAATCCCTCGTACACGATATACATTTATTTCGTGTTTCttcaat
ttgttttgaaatgactTGAACCAAAGTCTCAGGACGAATTTGTCTCGATT
GACAAAGAAACCTGTTGTTGGCCATATCACATGATTCGATATCAAAACAT
CCTTCTTCATCGACCAGATTTTCCATGTTGAAGACAACACAACCAGTCGA
GGATGAAGGGTTCACACCATTACACCATTTTTTGTATGGTGATTTATCGC
CATTGATCCATCGAAACTTCCCAGGTGACATGTCATACATTCTCTACTGG
AAATATAAAATATTAACTataaaatattaaactaaattaaactaaatgaa
aataagtattaaataaataaaaccagcgccttataCCACTAGGCCAACTT
CGAGCTGCGCGCTAGCGAAATTTCtcaataaatgaataaataagtAACTC
TTGCAATCATATCCTTGTATGTAATATCTCAGTTTATACCAACTACTAAC
AAAAGAATGGTATTTTGATGAATAGTGCAAACACAAACAGAATGGGTACC
AGAGGAACCTGCAATAACGCACCATTTTTTTCGGGGAGAACAGAATTTGG
AGAATCCAATCTTAAGGCCAGGGTTCTTTTCTTCAATGCAACGTAAAGTT
CATGTAATTCCAACAAACTACTATCATCGATAGTAGTAGGAACGGCAAAT
TCAGTGGGGCTaatctaaaatgaaaaataatccaCAAAATCATGTGTAAT
TTTTTTGGCTAAAAGAGAACAAAAGGTGCTTCATAGAAGCAACGCTACAA
ATTCAACCGCAAgtaagaaaaattagaaattactGACTTTCTTAAATGCG
CTGACTTGTGAAATCTTCACTGCCACTTTCTcaatcttaacttttttgga
cctacctccgggtaccccgttGGAgatcctttaaattaacccatgttcgt
ccgttcgttctttcgtctgttaccagcttttctcgggattggctcattac
ttttttctgttttttg Coding sequence (CDS) from alignment at sc0000432:58763..61678 >TCONS_00022787 ID=TCONS_00022787|Name=TCONS_00022787|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at sc0000432:58763..61678 (Clytia hemisphaerica)
TTAAGATAAGAGTATTTGAATAATACATGTCAACATCTCCGAATTTGTCA
TGTGTATTGTCATcagaaatgaaacaaaacgACTCGTGTTGAGCTCTCCT
TTTTCATCAACAAAATACATTACAATTGAATGCAACGTGCAATAGTTTTT
ACTCCAATCATAAGATTGTATCTCACCTTGGATAAGAAACTGATAATTCT
CAGCGAAGTCCCCAAGAACAATCACTTCATTTCTTTTCAGTGATTCATCC
TTCTCTGTTTTCAAAAAGTTGGCTTGTCTTTTGACAAGATATGAATGTCT
TGTCAAGGAATCAATAGCTTCAATTAAACTTTCCTTGTACTCTTCAAGGG
TTGTTGTTATTGTTACTAGTGTTGTATAATCTCTTTTTTGCCACTGTGAG
TAATGGAACTCAGAATCTTGTCTACGCTGCTGTACTGAAAAGGTTAACAT
GTTACAGCATCTGTGATAATAAAAATTAATCCCTCGTACACGATATACAT
TTATTTCGTGTTTCttcaatttgttttgaaatgactTGAACCAAAGTCTC
AGGACGAATTTGTCTCGATTGACAAAGAAACCTGTTGTTGGCCATATCAC
ATGATTCGATATCAAAACATCCTTCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022787-exon-sc0000432-1491911889:58763..61678 | TCONS_00022787-exon-sc0000432-1491911889:58763..61678 | Clytia hemisphaerica | exon |
| TCONS_00022787-exon-sc0000432-1510915933:58763..61678 | TCONS_00022787-exon-sc0000432-1510915933:58763..61678 | Clytia hemisphaerica | exon |
| TCONS_00022787-exon-sc0000432-1575043694:58763..61678 | TCONS_00022787-exon-sc0000432-1575043694:58763..61678 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000432 | supercontig | sc0000432:58763..61678 . |
Blast
The following BLAST results are available for this feature:
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